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Gene: Tmem50a (transmembrane protein 50A) Rattus norvegicus
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Symbol: Tmem50a
Name: transmembrane protein 50A
Description: Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to localize to endoplasmic reticulum; glial cell projection; and neuronal cell body. Orthologous to human TMEM50A (transmembrane protein 50A); INTERACTS WITH bisphenol A; nimesulide; 17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC298552; RGD1305638; similar to Small membrane protein 1
Orthologs:
Homo sapiens (human) : TMEM50A (transmembrane protein 50A)  HGNC  Alliance
Mus musculus (house mouse) : Tmem50a (transmembrane protein 50A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tmem50a (transmembrane protein 50A)
Pan paniscus (bonobo/pygmy chimpanzee) : TMEM50A (transmembrane protein 50A)
Canis lupus familiaris (dog) : TMEM50A (transmembrane protein 50A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tmem50a (transmembrane protein 50A)
Sus scrofa (pig) : TMEM50A (transmembrane protein 50A)
Chlorocebus sabaeus (African green monkey) : TMEM50A (transmembrane protein 50A)
Heterocephalus glaber (naked mole-rat) : Tmem50a (transmembrane protein 50A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05153,233,965 - 153,252,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,233,962 - 153,252,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05157,006,369 - 157,021,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45153,674,488 - 153,690,232 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15153,684,526 - 153,700,270 (-)NCBI
Celera5145,539,116 - 145,551,104 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tmem50a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305638
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.