Gene: Slc6a9 (solute carrier family 6 member 9) Rattus norvegicus
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Symbol: Slc6a9
Name: solute carrier family 6 member 9
Description: Predicted to have glycine transmembrane transporter activity; predicted to be involved in glycine secretion, neurotransmission, neurotransmitter uptake, and regulation of glycinergic synaptic transmission; localizes to several cellular components, including the hippocampal mossy fiber to CA3 synapse, integral component of synaptic vesicle membrane, and intrinsic component of plasma membrane; orthologous to human SLC6A9 (solute carrier family 6 member 9); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: glycine transporter 1; glycine transporter variant 1a; GLYT-1; GLYT-1b; Glyt1; sodium- and chloride-dependent glycine transporter 1; solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Orthologs:
Homo sapiens (human) : SLC6A9 (solute carrier family 6 member 9)  HGNC  Alliance
Mus musculus (house mouse) : Slc6a9 (solute carrier family 6 (neurotransmitter transporter, glycine), member 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc6a9 (solute carrier family 6 member 9)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC6A9 (solute carrier family 6 member 9)
Canis lupus familiaris (dog) : SLC6A9 (solute carrier family 6 member 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc6a9 (solute carrier family 6 member 9)
Sus scrofa (pig) : SLC6A9 (solute carrier family 6 member 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05136,669,674 - 136,703,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05140,458,723 - 140,492,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,300,869 - 138,334,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,313,795 - 138,339,599 (+)NCBI
Celera5129,922,904 - 129,957,106 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
  
More on Slc6a9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621243
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.