SLC6A9 (solute carrier family 6 member 9) - Rat Genome Database

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Gene: SLC6A9 (solute carrier family 6 member 9) Sus scrofa
Analyze
Symbol: SLC6A9
Name: solute carrier family 6 member 9
RGD ID: 14151175
Description: ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); GLYCINE ENCEPHALOPATHY WITH NORMAL SERUM GLYCINE (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium- and chloride-dependent glycine transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,268,957 - 167,301,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,267,193 - 167,301,598 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,781,274 - 154,783,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SLC6A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,268,957 - 167,301,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,267,193 - 167,301,598 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,781,274 - 154,783,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl143,991,500 - 44,031,467 (-)EnsemblGRCh38hg38GRCh38
GRCh38143,996,483 - 44,031,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37144,462,155 - 44,497,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,234,742 - 44,269,721 (-)NCBINCBI36hg18NCBI36
Build 34144,132,286 - 44,152,090NCBI
Celera142,745,693 - 42,780,672 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef142,577,665 - 42,612,669 (-)NCBIHuRef
CHM1_1144,578,322 - 44,613,386 (-)NCBICHM1_1
Slc6a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,692,240 - 117,726,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl4117,691,703 - 117,732,395 (+)Ensembl
GRCm384117,835,258 - 117,869,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,834,506 - 117,875,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,507,863 - 117,541,910 (+)NCBIGRCm37mm9NCBIm37
MGSCv364117,333,190 - 117,367,237 (+)NCBImm8
Celera4116,550,328 - 116,584,414 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.62NCBI
Slc6a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,374,562 - 131,408,733 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5131,374,542 - 131,408,728 (+)Ensembl
Rnor_6.05136,669,674 - 136,703,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,669,674 - 136,703,697 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,458,723 - 140,492,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,300,869 - 138,334,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,313,795 - 138,339,599 (+)NCBI
Celera5129,922,904 - 129,957,106 (+)NCBICelera
Cytogenetic Map5q36NCBI
Slc6a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,520,516 - 3,550,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,520,516 - 3,549,492 (-)NCBIChiLan1.0ChiLan1.0
SLC6A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,669,364 - 44,704,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,664,839 - 44,704,882 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,298,326 - 43,333,345 (-)NCBIMhudiblu_PPA_v0panPan3
SLC6A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,235,342 - 16,267,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
Slc6a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,487,760 - 59,520,209 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,774,354 - 88,809,726 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,774,339 - 88,808,669 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603328,117,914 - 28,153,448 (-)NCBIVero_WHO_p1.0
Slc6a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248923,275,034 - 3,308,579 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 2 3 5 22 2 3 3
Below cutoff 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021096811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021096825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK389893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01077730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000036867   ⟹   ENSSSCP00000052202
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6167,269,089 - 167,301,050 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045700   ⟹   ENSSSCP00000044124
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6167,280,517 - 167,301,599 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053279   ⟹   ENSSSCP00000050954
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6167,270,300 - 167,300,412 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053601   ⟹   ENSSSCP00000058631
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6167,268,957 - 167,301,598 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063644   ⟹   ENSSSCP00000044810
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6167,269,045 - 167,301,598 (+)Ensembl
RefSeq Acc Id: XM_021096811   ⟹   XP_020952470
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,280,685 - 167,301,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096812   ⟹   XP_020952471
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,268,924 - 167,301,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096814   ⟹   XP_020952473
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,267,193 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096815   ⟹   XP_020952474
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,270,293 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096816   ⟹   XP_020952475
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,269,226 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096817   ⟹   XP_020952476
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,267,193 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096818   ⟹   XP_020952477
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,268,924 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096819   ⟹   XP_020952478
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,269,077 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096820   ⟹   XP_020952479
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,269,226 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096821   ⟹   XP_020952480
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,279,906 - 167,300,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096822   ⟹   XP_020952481
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,268,924 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096823   ⟹   XP_020952482
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,270,286 - 167,301,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096825   ⟹   XP_020952484
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16167,269,225 - 167,301,597 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020952473   ⟸   XM_021096814
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952476   ⟸   XM_021096817
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952471   ⟸   XM_021096812
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952477   ⟸   XM_021096818
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020952481   ⟸   XM_021096822
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020952478   ⟸   XM_021096819
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020952484   ⟸   XM_021096825
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020952475   ⟸   XM_021096816
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952479   ⟸   XM_021096820
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020952482   ⟸   XM_021096823
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020952474   ⟸   XM_021096815
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952480   ⟸   XM_021096821
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020952470   ⟸   XM_021096811
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000044124   ⟸   ENSSSCT00000045700
RefSeq Acc Id: ENSSSCP00000052202   ⟸   ENSSSCT00000036867
RefSeq Acc Id: ENSSSCP00000050954   ⟸   ENSSSCT00000053279
RefSeq Acc Id: ENSSSCP00000058631   ⟸   ENSSSCT00000053601
RefSeq Acc Id: ENSSSCP00000044810   ⟸   ENSSSCT00000063644


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039770 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070029630 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000044124 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044810 UniProtKB/TrEMBL
  ENSSSCP00000050954 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000052202 UniProtKB/TrEMBL
  ENSSSCP00000058631 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070050785 UniProtKB/TrEMBL
  ENSSSCP00070050791 UniProtKB/TrEMBL
  ENSSSCP00070050792 UniProtKB/TrEMBL
  ENSSSCP00070050806 UniProtKB/TrEMBL
  ENSSSCP00070050807 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036867 UniProtKB/TrEMBL
  ENSSSCT00000045700 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053279 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053601 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000063644 UniProtKB/TrEMBL
  ENSSSCT00070059617 UniProtKB/TrEMBL
  ENSSSCT00070059628 UniProtKB/TrEMBL
  ENSSSCT00070059629 UniProtKB/TrEMBL
  ENSSSCT00070059644 UniProtKB/TrEMBL
  ENSSSCT00070059645 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  Na/ntran_symport_glycine_GLY1 UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
NCBI Gene SLC6A9 ENTREZGENE
PANTHER PTHR11616 UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PRINTS GLY1TRNSPORT UniProtKB/TrEMBL
  NANEUSMPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A0A287AJD7_PIG UniProtKB/TrEMBL
  A0A287ALM3_PIG UniProtKB/TrEMBL
  A0A287B4B8_PIG UniProtKB/TrEMBL
  A0A287B6Q1_PIG UniProtKB/TrEMBL
  A0A287BQC5_PIG UniProtKB/TrEMBL
  A0A4X1W8P0_PIG UniProtKB/TrEMBL
  A0A4X1W922_PIG UniProtKB/TrEMBL
  A0A4X1WAE1_PIG UniProtKB/TrEMBL
  A0A4X1WAF9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93168 ENTREZGENE