SLC6A9 (solute carrier family 6 member 9) - Rat Genome Database
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Gene: SLC6A9 (solute carrier family 6 member 9) Pan paniscus
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Symbol: SLC6A9
Name: solute carrier family 6 member 9
RGD ID: 11968630
Description: ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); GLYCINE ENCEPHALOPATHY WITH NORMAL SERUM GLYCINE (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium- and chloride-dependent glycine transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,669,364 - 44,704,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,664,839 - 44,704,882 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,298,326 - 43,333,345 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC6A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,669,364 - 44,704,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,664,839 - 44,704,882 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,298,326 - 43,333,345 (-)NCBIMhudiblu_PPA_v0panPan3
SLC6A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl143,991,500 - 44,031,467 (-)EnsemblGRCh38hg38GRCh38
GRCh38143,996,483 - 44,031,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37144,462,155 - 44,497,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,234,742 - 44,269,721 (-)NCBINCBI36hg18NCBI36
Build 34144,132,286 - 44,152,090NCBI
Celera142,745,693 - 42,780,672 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef142,577,665 - 42,612,669 (-)NCBIHuRef
CHM1_1144,578,322 - 44,613,386 (-)NCBICHM1_1
Slc6a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,692,240 - 117,726,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl4117,691,703 - 117,732,395 (+)Ensembl
GRCm384117,835,258 - 117,869,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,834,506 - 117,875,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,507,863 - 117,541,910 (+)NCBIGRCm37mm9NCBIm37
MGSCv364117,333,190 - 117,367,237 (+)NCBImm8
Celera4116,550,328 - 116,584,414 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.62NCBI
Slc6a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,374,562 - 131,408,733 (+)NCBI
Rnor_6.0 Ensembl5136,669,674 - 136,703,697 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05136,669,674 - 136,703,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05140,458,723 - 140,492,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,300,869 - 138,334,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,313,795 - 138,339,599 (+)NCBI
Celera5129,922,904 - 129,957,106 (+)NCBICelera
Cytogenetic Map5q36NCBI
Slc6a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,520,516 - 3,550,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,520,516 - 3,549,492 (-)NCBIChiLan1.0ChiLan1.0
SLC6A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11516,235,342 - 16,267,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc6a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,268,957 - 167,301,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,267,193 - 167,301,598 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,781,274 - 154,783,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,774,354 - 88,809,726 (+)NCBI
ChlSab1.1 Ensembl2088,774,339 - 88,808,669 (+)Ensembl
Slc6a9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248923,275,034 - 3,308,579 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003812819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003812820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008965312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008965314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008965316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008965318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000064311   ⟹   ENSPPAP00000041385
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,664,839 - 44,683,092 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064317   ⟹   ENSPPAP00000041391
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,665,107 - 44,697,266 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064323   ⟹   ENSPPAP00000041397
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,669,364 - 44,704,882 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064327   ⟹   ENSPPAP00000041401
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,669,364 - 44,690,344 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064333   ⟹   ENSPPAP00000041407
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,670,426 - 44,690,137 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000064339   ⟹   ENSPPAP00000041413
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl144,670,426 - 44,688,760 (-)Ensembl
RefSeq Acc Id: XM_003812819   ⟹   XP_003812867
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,704,882 (-)NCBI
Mhudiblu_PPA_v0143,298,333 - 43,333,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003812820   ⟹   XP_003812868
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,690,344 (-)NCBI
Mhudiblu_PPA_v0143,298,333 - 43,319,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008965312   ⟹   XP_008963560
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,704,446 (-)NCBI
Mhudiblu_PPA_v0143,298,333 - 43,332,937 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008965314   ⟹   XP_008963562
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,690,344 (-)NCBI
Mhudiblu_PPA_v0143,298,333 - 43,319,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008965316   ⟹   XP_008963564
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,704,841 (-)NCBI
Mhudiblu_PPA_v0143,298,326 - 43,333,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008965318   ⟹   XP_008963566
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,694,910 (-)NCBI
Mhudiblu_PPA_v0143,299,388 - 43,323,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930976   ⟹   XP_024786744
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1144,669,364 - 44,690,200 (-)NCBI
Mhudiblu_PPA_v0143,298,333 - 43,319,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034963303   ⟹   XP_034819194
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,298,333 - 43,319,119 (-)NCBI
RefSeq Acc Id: XM_034963307   ⟹   XP_034819198
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,299,388 - 43,333,345 (-)NCBI
RefSeq Acc Id: XM_034963312   ⟹   XP_034819203
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,299,388 - 43,319,078 (-)NCBI
RefSeq Acc Id: XM_034963315   ⟹   XP_034819206
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,299,388 - 43,328,238 (-)NCBI
RefSeq Acc Id: XM_034963319   ⟹   XP_034819210
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,298,326 - 43,319,144 (-)NCBI
RefSeq Acc Id: XM_034963322   ⟹   XP_034819213
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,298,326 - 43,319,120 (-)NCBI
RefSeq Acc Id: XM_034963324   ⟹   XP_034819215
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,298,326 - 43,319,136 (-)NCBI
RefSeq Acc Id: XM_034963325   ⟹   XP_034819216
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0143,299,388 - 43,318,392 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003812867   ⟸   XM_003812819
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008963564   ⟸   XM_008965316
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008963560   ⟸   XM_008965312
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008963566   ⟸   XM_008965318
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_003812868   ⟸   XM_003812820
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008963562   ⟸   XM_008965314
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_024786744   ⟸   XM_024930976
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_034819210   ⟸   XM_034963319
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034819215   ⟸   XM_034963324
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034819213   ⟸   XM_034963322
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034819194   ⟸   XM_034963303
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034819198   ⟸   XM_034963307
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034819206   ⟸   XM_034963315
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034819203   ⟸   XM_034963312
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034819216   ⟸   XM_034963325
- Peptide Label: isoform X10
RefSeq Acc Id: ENSPPAP00000041391   ⟸   ENSPPAT00000064317
RefSeq Acc Id: ENSPPAP00000041385   ⟸   ENSPPAT00000064311
RefSeq Acc Id: ENSPPAP00000041413   ⟸   ENSPPAT00000064339
RefSeq Acc Id: ENSPPAP00000041407   ⟸   ENSPPAT00000064333
RefSeq Acc Id: ENSPPAP00000041401   ⟸   ENSPPAT00000064327
RefSeq Acc Id: ENSPPAP00000041397   ⟸   ENSPPAT00000064323


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000041385 UniProtKB/TrEMBL
  ENSPPAP00000041391 UniProtKB/TrEMBL
  ENSPPAP00000041397 UniProtKB/TrEMBL
  ENSPPAP00000041401 UniProtKB/TrEMBL
  ENSPPAP00000041407 UniProtKB/TrEMBL
  ENSPPAP00000041413 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064311 UniProtKB/TrEMBL
  ENSPPAT00000064317 UniProtKB/TrEMBL
  ENSPPAT00000064323 UniProtKB/TrEMBL
  ENSPPAT00000064327 UniProtKB/TrEMBL
  ENSPPAT00000064333 UniProtKB/TrEMBL
  ENSPPAT00000064339 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  Na/ntran_symport_glycine_GLY1 UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
KEGG Report pps:100978342 UniProtKB/TrEMBL
NCBI Gene SLC6A9 ENTREZGENE
PANTHER PTHR11616 UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PRINTS GLY1TRNSPORT UniProtKB/TrEMBL
  NANEUSMPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A0A2R9CHE3_PANPA UniProtKB/TrEMBL
  A0A2R9CHF3_PANPA UniProtKB/TrEMBL
  A0A2R9CHG2_PANPA UniProtKB/TrEMBL
  A0A2R9CK85_PANPA UniProtKB/TrEMBL
  A0A2R9CR51_PANPA UniProtKB/TrEMBL
  A0A2R9CR56_PANPA UniProtKB/TrEMBL