SLC6A9 (solute carrier family 6 member 9) - Rat Genome Database

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Gene: SLC6A9 (solute carrier family 6 member 9) Canis lupus familiaris
Analyze
Symbol: SLC6A9
Name: solute carrier family 6 member 9
RGD ID: 12294444
Description: ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); GLYCINE ENCEPHALOPATHY WITH NORMAL SERUM GLYCINE (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); basal plasma membrane (ortholog); INTERACTS WITH monensin A; phorbol 13-acetate 12-myristate
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium- and chloride-dependent glycine transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,235,342 - 16,267,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
SLC6A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,235,342 - 16,267,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
SLC6A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl143,991,500 - 44,031,467 (-)EnsemblGRCh38hg38GRCh38
GRCh38143,996,483 - 44,031,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37144,462,155 - 44,497,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,234,742 - 44,269,721 (-)NCBINCBI36hg18NCBI36
Build 34144,132,286 - 44,152,090NCBI
Celera142,745,693 - 42,780,672 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef142,577,665 - 42,612,669 (-)NCBIHuRef
CHM1_1144,578,322 - 44,613,386 (-)NCBICHM1_1
Slc6a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,692,240 - 117,726,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl4117,691,703 - 117,732,395 (+)Ensembl
GRCm384117,835,258 - 117,869,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,834,506 - 117,875,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,507,863 - 117,541,910 (+)NCBIGRCm37mm9NCBIm37
MGSCv364117,333,190 - 117,367,237 (+)NCBImm8
Celera4116,550,328 - 116,584,414 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.62NCBI
Slc6a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,374,562 - 131,408,733 (+)NCBI
Rnor_6.0 Ensembl5136,669,674 - 136,703,697 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05136,669,674 - 136,703,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05140,458,723 - 140,492,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,300,869 - 138,334,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,313,795 - 138,339,599 (+)NCBI
Celera5129,922,904 - 129,957,106 (+)NCBICelera
Cytogenetic Map5q36NCBI
Slc6a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,520,516 - 3,550,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,520,516 - 3,549,492 (-)NCBIChiLan1.0ChiLan1.0
SLC6A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,669,364 - 44,704,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,664,839 - 44,704,882 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,298,326 - 43,333,345 (-)NCBIMhudiblu_PPA_v0panPan3
Slc6a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,487,760 - 59,520,209 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,268,957 - 167,301,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,267,193 - 167,301,598 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,781,274 - 154,783,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,774,354 - 88,809,726 (+)NCBI
ChlSab1.1 Ensembl2088,774,339 - 88,808,669 (+)Ensembl
Vero_WHO_p1.0NW_02366603328,117,914 - 28,153,448 (-)NCBI
Slc6a9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248923,275,034 - 3,308,579 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 10 6 6 5
Low 5 3 6 6 6 5 6
Below cutoff 2 6 6 6 6 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005629097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_857445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000007773   ⟹   ENSCAFP00000007205
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000007777   ⟹   ENSCAFP00000007209
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1516,246,864 - 16,267,933 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074805   ⟹   ENSCAFP00000048989
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1516,246,864 - 16,267,933 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079381   ⟹   ENSCAFP00000059161
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1516,246,864 - 16,267,933 (+)Ensembl
RefSeq Acc Id: XM_005629097   ⟹   XP_005629154
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,235,342 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629098   ⟹   XP_005629155
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,235,790 - 16,267,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629099   ⟹   XP_005629156
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,237,034 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,358,569 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629102   ⟹   XP_005629159
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,253,132 - 16,267,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428044   ⟹   XP_022283752
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,241,314 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,362,677 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428045   ⟹   XP_022283753
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,237,034 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,358,456 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428046   ⟹   XP_022283754
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,241,314 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428047   ⟹   XP_022283755
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,247,169 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,368,529 - 16,389,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428048   ⟹   XP_022283756
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,253,138 - 16,267,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038451855   ⟹   XP_038307783
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1516,368,483 - 16,387,961 (+)NCBI
RefSeq Acc Id: XM_038495941   ⟹   XP_038351869
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,200,957 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495942   ⟹   XP_038351870
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495943   ⟹   XP_038351871
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,190,963 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495944   ⟹   XP_038351872
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,191,076 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495945   ⟹   XP_038351873
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495946   ⟹   XP_038351874
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,200,988 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495947   ⟹   XP_038351875
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,195,159 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038495948   ⟹   XP_038351876
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11516,200,997 - 16,221,582 (+)NCBI
RefSeq Acc Id: XM_038558316   ⟹   XP_038414244
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,342,697 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558317   ⟹   XP_038414245
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558318   ⟹   XP_038414246
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,332,693 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558319   ⟹   XP_038414247
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,332,806 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558320   ⟹   XP_038414248
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558321   ⟹   XP_038414249
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,342,743 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558323   ⟹   XP_038414251
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,336,889 - 16,363,315 (+)NCBI
RefSeq Acc Id: XM_038558324   ⟹   XP_038414252
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01516,342,697 - 16,362,189 (+)NCBI
RefSeq Acc Id: XM_038622206   ⟹   XP_038478134
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,269,554 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622207   ⟹   XP_038478135
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,269,554 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622208   ⟹   XP_038478136
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622209   ⟹   XP_038478137
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,259,550 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622210   ⟹   XP_038478138
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,259,663 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622211   ⟹   XP_038478139
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622213   ⟹   XP_038478141
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,269,599 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038622214   ⟹   XP_038478142
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01516,263,747 - 16,290,585 (+)NCBI
RefSeq Acc Id: XM_038687934   ⟹   XP_038543862
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,402,133 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687935   ⟹   XP_038543863
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,402,133 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687936   ⟹   XP_038543864
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687937   ⟹   XP_038543865
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,392,118 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687938   ⟹   XP_038543866
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,392,231 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687939   ⟹   XP_038543867
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,408,201 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687940   ⟹   XP_038543868
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687941   ⟹   XP_038543869
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,402,178 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_038687942   ⟹   XP_038543870
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01516,396,315 - 16,422,650 (+)NCBI
RefSeq Acc Id: XM_857445   ⟹   XP_862538
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,247,140 - 16,267,161 (+)NCBI
Dog10K_Boxer_Tasha1516,368,483 - 16,389,086 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005629154 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629156 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283752 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283753 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283754 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283755 (Get FASTA)   NCBI Sequence Viewer  
  XP_038307783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351870 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351871 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414245 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414246 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414247 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414248 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414249 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414251 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414252 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478135 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478137 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478138 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478142 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543863 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543864 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543868 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543870 (Get FASTA)   NCBI Sequence Viewer  
  XP_862538 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005629154   ⟸   XM_005629097
- Peptide Label: isoform X3
- UniProtKB: E2RM41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005629155   ⟸   XM_005629098
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005629156   ⟸   XM_005629099
- Peptide Label: isoform X3
- UniProtKB: E2RM41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_862538   ⟸   XM_857445
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005629159   ⟸   XM_005629102
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022283753   ⟸   XM_022428045
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022283754   ⟸   XM_022428046
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022283752   ⟸   XM_022428044
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022283755   ⟸   XM_022428047
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022283756   ⟸   XM_022428048
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCAFP00000048989   ⟸   ENSCAFT00000074805
RefSeq Acc Id: ENSCAFP00000059161   ⟸   ENSCAFT00000079381
RefSeq Acc Id: ENSCAFP00000007209   ⟸   ENSCAFT00000007777
RefSeq Acc Id: ENSCAFP00000007205   ⟸   ENSCAFT00000007773
RefSeq Acc Id: XP_038351870   ⟸   XM_038495942
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038351873   ⟸   XM_038495945
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038351871   ⟸   XM_038495943
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038351872   ⟸   XM_038495944
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038351875   ⟸   XM_038495947
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038351869   ⟸   XM_038495941
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038351874   ⟸   XM_038495946
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038351876   ⟸   XM_038495948
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478136   ⟸   XM_038622208
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478139   ⟸   XM_038622211
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038478137   ⟸   XM_038622209
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478138   ⟸   XM_038622210
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478142   ⟸   XM_038622214
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478135   ⟸   XM_038622207
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038478134   ⟸   XM_038622206
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478141   ⟸   XM_038622213
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038543864   ⟸   XM_038687936
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038543868   ⟸   XM_038687940
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038543865   ⟸   XM_038687937
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038543866   ⟸   XM_038687938
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038543870   ⟸   XM_038687942
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038543863   ⟸   XM_038687935
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038543862   ⟸   XM_038687934
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038543869   ⟸   XM_038687941
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038543867   ⟸   XM_038687939
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038307783   ⟸   XM_038451855
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038414245   ⟸   XM_038558317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038414248   ⟸   XM_038558320
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038414246   ⟸   XM_038558318
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038414247   ⟸   XM_038558319
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038414251   ⟸   XM_038558323
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038414244   ⟸   XM_038558316
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038414252   ⟸   XM_038558324
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038414249   ⟸   XM_038558321
- Peptide Label: isoform X4

Promoters
RGD ID:13685919
Promoter ID:EPDNEW_C3987
Type:initiation region
Name:SLC6A9_1
Description:solute carrier family 6 member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11516,235,532 - 16,235,592EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004826 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000007205 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000007209 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000048989 UniProtKB/TrEMBL
  ENSCAFP00000059161 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007773 UniProtKB/TrEMBL
  ENSCAFT00000007777 UniProtKB/TrEMBL
  ENSCAFT00000074805 UniProtKB/TrEMBL
  ENSCAFT00000079381 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  Na/ntran_symport_glycine_GLY1 UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
KEGG Report cfa:482526 UniProtKB/TrEMBL
NCBI Gene SLC6A9 ENTREZGENE
PANTHER PTHR11616 UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PRINTS GLY1TRNSPORT UniProtKB/TrEMBL
  NANEUSMPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A0A5F4C668_CANLF UniProtKB/TrEMBL
  A0A5F4CXV1_CANLF UniProtKB/TrEMBL
  E2RM38_CANLF UniProtKB/TrEMBL
  E2RM41 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46469 ENTREZGENE