Slc6a9 (solute carrier family 6 member 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc6a9 (solute carrier family 6 member 9) Ictidomys tridecemlineatus
Analyze
Symbol: Slc6a9
Name: solute carrier family 6 member 9
RGD ID: 12640745
Description: ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); GLYCINE ENCEPHALOPATHY WITH NORMAL SERUM GLYCINE (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium- and chloride-dependent glycine transporter 1; solute carrier family 6 member 9, transcript variant X1; solute carrier family 6 member 9, transcript variant X2; solute carrier family 6 member 9, transcript variant X3; solute carrier family 6 member 9, transcript variant X4; solute carrier family 6 member 9, transcript variant X5; solute carrier family 6 member 9, transcript variant X6; solute carrier family 6 member 9, transcript variant X7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,487,760 - 59,520,209 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Slc6a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,487,760 - 59,520,209 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl143,991,500 - 44,031,467 (-)EnsemblGRCh38hg38GRCh38
GRCh38143,996,483 - 44,031,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37144,462,155 - 44,497,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,234,742 - 44,269,721 (-)NCBINCBI36hg18NCBI36
Build 34144,132,286 - 44,152,090NCBI
Celera142,745,693 - 42,780,672 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef142,577,665 - 42,612,669 (-)NCBIHuRef
CHM1_1144,578,322 - 44,613,386 (-)NCBICHM1_1
Slc6a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,692,240 - 117,726,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl4117,691,703 - 117,732,395 (+)Ensembl
GRCm384117,835,258 - 117,869,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,834,506 - 117,875,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,507,863 - 117,541,910 (+)NCBIGRCm37mm9NCBIm37
MGSCv364117,333,190 - 117,367,237 (+)NCBImm8
Celera4116,550,328 - 116,584,414 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.62NCBI
Slc6a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,374,562 - 131,408,733 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5131,374,542 - 131,408,728 (+)Ensembl
Rnor_6.05136,669,674 - 136,703,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,669,674 - 136,703,697 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,458,723 - 140,492,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,300,869 - 138,334,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,313,795 - 138,339,599 (+)NCBI
Celera5129,922,904 - 129,957,106 (+)NCBICelera
Cytogenetic Map5q36NCBI
Slc6a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,520,516 - 3,550,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,520,516 - 3,549,492 (-)NCBIChiLan1.0ChiLan1.0
SLC6A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,669,364 - 44,704,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,664,839 - 44,704,882 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,298,326 - 43,333,345 (-)NCBIMhudiblu_PPA_v0panPan3
SLC6A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,235,342 - 16,267,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,235,482 - 16,267,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,356,708 - 16,389,086 (+)NCBI
ROS_Cfam_1.01516,390,376 - 16,422,650 (+)NCBI
UMICH_Zoey_3.11516,189,225 - 16,221,582 (+)NCBI
UNSW_CanFamBas_1.01516,257,816 - 16,290,585 (+)NCBI
UU_Cfam_GSD_1.01516,330,949 - 16,363,315 (+)NCBI
SLC6A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,268,957 - 167,301,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,267,193 - 167,301,598 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,781,274 - 154,783,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,774,354 - 88,809,726 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,774,339 - 88,808,669 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603328,117,914 - 28,153,448 (-)NCBIVero_WHO_p1.0
Slc6a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248923,275,034 - 3,308,579 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005317940   ⟹   XP_005317997
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,520,174 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,993 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719829   ⟹   XP_021575504
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,508,544 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,333,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719840   ⟹   XP_021575515
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,508,645 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,333,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719853   ⟹   XP_021575528
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,519,853 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,344,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719854   ⟹   XP_021575529
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,508,654 (-)NCBI
SpeTri2.0NW_00493647425,312,544 - 25,333,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040288517   ⟹   XP_040144451
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,508,549 (-)NCBI
RefSeq Acc Id: XM_040288518   ⟹   XP_040144452
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,520,209 (-)NCBI
RefSeq Acc Id: XM_040288519   ⟹   XP_040144453
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,508,534 (-)NCBI
RefSeq Acc Id: XM_040288521   ⟹   XP_040144455
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505859,487,760 - 59,514,085 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005317997   ⟸   XM_005317940
- Peptide Label: isoform X6
- UniProtKB: A0A287D382 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575528   ⟸   XM_021719853
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021575529   ⟸   XM_021719854
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021575515   ⟸   XM_021719840
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021575504   ⟸   XM_021719829
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040144452   ⟸   XM_040288518
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040144455   ⟸   XM_040288521
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040144451   ⟸   XM_040288517
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040144453   ⟸   XM_040288519
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004456 ENTREZGENE
Ensembl Protein ENSSTOP00000003999 ENTREZGENE
  ENSSTOP00000025541 ENTREZGENE
  ENSSTOP00000028036 ENTREZGENE
NCBI Gene Slc6a9 ENTREZGENE
UniProt A0A287D382 ENTREZGENE