Pla2g2c (phospholipase A2, group IIC) - Rat Genome Database

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Gene: Pla2g2c (phospholipase A2, group IIC) Rattus norvegicus
Analyze
Symbol: Pla2g2c
Name: phospholipase A2, group IIC
RGD ID: 3340
Description: Enables calcium-dependent phospholipase A2 activity. Predicted to be involved in phosphatidylcholine metabolic process and phosphatidylglycerol metabolic process. Predicted to be located in extracellular region and membrane. Orthologous to human PLA2G2C (phospholipase A2 group IIC); PARTICIPATES IN alpha-linolenic acid metabolic pathway; arachidonic acid metabolic pathway; ether lipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 14 kDa phospholipase A2; GIIC sPLA2; group IIC secretory phospholipase A2; phosphatidylcholine 2-acylhydrolase 2C; phosphatidylcholine 2-acylhydrolase GIIC; phospholipase A2 group IIC; phospholipase A2, group 2C; PLA2-8; sPLA2-IIC
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,241,142 - 156,262,368 (+)NCBIGRCr8
mRatBN7.25150,959,365 - 150,981,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,959,182 - 150,981,377 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,657,591 - 153,676,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,431,891 - 155,451,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,413,404 - 155,432,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,163,672 - 157,187,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,165,341 - 157,187,643 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,903,738 - 160,929,464 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,536,546 - 157,555,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,300,874 - 157,568,245 (+)NCBI
Celera5149,347,976 - 149,367,111 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of novel rat and mouse low molecular weight Ca(2+)-dependent phospholipase A2s containing 16 cysteines. Chen J, etal., J Biol Chem 1994 Sep 16;269(37):23018-24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Pla2g2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,241,142 - 156,262,368 (+)NCBIGRCr8
mRatBN7.25150,959,365 - 150,981,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,959,182 - 150,981,377 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,657,591 - 153,676,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,431,891 - 155,451,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,413,404 - 155,432,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,163,672 - 157,187,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,165,341 - 157,187,643 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,903,738 - 160,929,464 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,536,546 - 157,555,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,300,874 - 157,568,245 (+)NCBI
Celera5149,347,976 - 149,367,111 (+)NCBICelera
Cytogenetic Map5q36NCBI
PLA2G2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,163,055 - 20,186,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,161,253 - 20,186,518 (-)EnsemblGRCh38hg38GRCh38
GRCh37120,489,548 - 20,513,011 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,363,071 - 20,374,274 (-)NCBINCBI36Build 36hg18NCBI36
Celera118,813,602 - 18,824,805 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef118,736,223 - 18,747,426 (-)NCBIHuRef
CHM1_1120,600,161 - 20,611,364 (-)NCBICHM1_1
T2T-CHM13v2.0119,986,700 - 20,010,162 (-)NCBIT2T-CHM13v2.0
Pla2g2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,452,636 - 138,471,886 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,452,103 - 138,473,443 (+)EnsemblGRCm39 Ensembl
GRCm384138,725,325 - 138,744,575 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,724,792 - 138,746,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv374138,281,240 - 138,300,490 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,997,817 - 138,016,649 (+)NCBIMGSCv36mm8
Celera4140,507,993 - 140,527,237 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.54NCBI
Pla2g2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955452770,952 - 783,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955452771,031 - 783,323 (-)NCBIChiLan1.0ChiLan1.0
PLA2G2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,931,634 - 206,955,707 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11206,048,484 - 206,072,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,118,341 - 19,142,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,162,076 - 20,173,928 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,161,553 - 20,176,092 (-)Ensemblpanpan1.1panPan2
PLA2G2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,609,852 - 78,700,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,193,206 - 75,214,536 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,245,924 - 79,267,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,183,293 - 79,267,303 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,065,084 - 76,086,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,071,825 - 77,093,190 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,142,515 - 78,163,886 (+)NCBIUU_Cfam_GSD_1.0
LOC101976106
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,382,221 - 40,391,693 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364746,207,021 - 6,212,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1678,433,168 - 78,446,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,624,176 - 72,644,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120112,365,898 - 112,389,268 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20112,375,528 - 112,389,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660333,795,009 - 3,887,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247645,257,955 - 5,269,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pla2g2c
159 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:85
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000043029
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat

Markers in Region
RH137900  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,981,228 - 150,981,363 (+)MAPPERmRatBN7.2
Rnor_6.05157,187,495 - 157,187,629NCBIRnor6.0
Rnor_5.05160,929,305 - 160,929,439UniSTSRnor5.0
RGSC_v3.45157,558,047 - 157,558,181UniSTSRGSC3.4
Celera5149,369,263 - 149,369,397UniSTS
RH 3.4 Map51033.0UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 106 38 44 13 17 13 6 155 82 93 43 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000043029   ⟹   ENSRNOP00000039825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5157,165,888 - 157,185,343 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087072   ⟹   ENSRNOP00000072615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,959,182 - 150,981,377 (+)Ensembl
Rnor_6.0 Ensembl5157,165,341 - 157,187,643 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112153   ⟹   ENSRNOP00000097954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,968,433 - 150,981,377 (+)Ensembl
RefSeq Acc Id: NM_019202   ⟹   NP_062075
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,242,998 - 156,262,368 (+)NCBI
mRatBN7.25150,959,729 - 150,979,077 (+)NCBI
Rnor_6.05157,165,888 - 157,185,343 (+)NCBI
Rnor_5.05160,903,738 - 160,929,464 (+)NCBI
RGSC_v3.45157,536,546 - 157,555,895 (+)RGD
Celera5149,347,976 - 149,367,111 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239142   ⟹   XP_006239204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,242,958 - 156,262,363 (+)NCBI
mRatBN7.25150,959,723 - 150,981,388 (+)NCBI
Rnor_6.05157,165,832 - 157,187,654 (+)NCBI
Rnor_5.05160,903,738 - 160,929,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239143   ⟹   XP_006239205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,241,142 - 156,262,363 (+)NCBI
mRatBN7.25150,959,365 - 150,981,388 (+)NCBI
Rnor_6.05157,165,713 - 157,187,654 (+)NCBI
Rnor_5.05160,903,738 - 160,929,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109368   ⟹   XP_038965296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,242,984 - 156,262,363 (+)NCBI
mRatBN7.25150,959,723 - 150,981,388 (+)NCBI
RefSeq Acc Id: XM_039109369   ⟹   XP_038965297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,242,954 - 156,262,363 (+)NCBI
mRatBN7.25150,959,685 - 150,981,388 (+)NCBI
RefSeq Acc Id: NP_062075   ⟸   NM_019202
- Peptide Label: precursor
- UniProtKB: P39878 (UniProtKB/Swiss-Prot),   Q4V8L7 (UniProtKB/TrEMBL),   A0A0G2K3F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239205   ⟸   XM_006239143
- Peptide Label: isoform X1
- UniProtKB: P39878 (UniProtKB/Swiss-Prot),   Q4V8L7 (UniProtKB/TrEMBL),   A0A0G2K3F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239204   ⟸   XM_006239142
- Peptide Label: isoform X1
- UniProtKB: P39878 (UniProtKB/Swiss-Prot),   Q4V8L7 (UniProtKB/TrEMBL),   A0A0G2K3F5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039825   ⟸   ENSRNOT00000043029
Ensembl Acc Id: ENSRNOP00000072615   ⟸   ENSRNOT00000087072
RefSeq Acc Id: XP_038965297   ⟸   XM_039109369
- Peptide Label: isoform X1
- UniProtKB: P39878 (UniProtKB/Swiss-Prot),   Q4V8L7 (UniProtKB/TrEMBL),   A0A0G2K3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965296   ⟸   XM_039109368
- Peptide Label: isoform X1
- UniProtKB: P39878 (UniProtKB/Swiss-Prot),   Q4V8L7 (UniProtKB/TrEMBL),   A0A0G2K3F5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097954   ⟸   ENSRNOT00000112153
Protein Domains
Phospholipase A2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P39878-F1-model_v2 AlphaFold P39878 1-150 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694191
Promoter ID:EPDNEW_R4716
Type:single initiation site
Name:Pla2g2c_1
Description:phospholipase A2, group IIC
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05157,165,869 - 157,165,929EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3340 AgrOrtholog
BioCyc Gene G2FUF-39443 BioCyc
Ensembl Genes ENSRNOG00000016647 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087072.2 UniProtKB/TrEMBL
  ENSRNOT00000112153.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.90.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456563 IMAGE-MGC_LOAD
InterPro PLipase_A2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_A2_Asp_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_A2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_A2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_A2_His_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114328 IMAGE-MGC_LOAD
NCBI Gene 29387 ENTREZGENE
PANTHER INACTIVE GROUP IIC SECRETORY PHOSPHOLIPASE A2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11716 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Phospholip_A2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pla2g2c PhenoGen
PRINTS PHPHLIPASEA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PA2_ASP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PA2_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016647 RatGTEx
SMART PA2c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48619 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC209648
UniProt A0A0G2K3F5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASV9_RAT UniProtKB/TrEMBL
  P39878 ENTREZGENE, UniProtKB/Swiss-Prot
  Q4V8L7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-15 Pla2g2c  phospholipase A2, group IIC  Pla2g2c  phospholipase A2, group 2C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Pla2g2c  phospholipase A2, group 2C      Symbol and Name status set to approved 1299863 APPROVED
2002-06-10 Pla2g2c  phospholipase A2, group 2C      Name updated 70585 PROVISIONAL