LOC101976106 (uncharacterized LOC101976106) - Rat Genome Database

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Gene: LOC101976106 (uncharacterized LOC101976106) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976106
Name: uncharacterized LOC101976106
RGD ID: 12712126
Description: ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phospholipase A2 group IIC; Pla2g2c; uncharacterized protein LOC101976106
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,382,221 - 40,391,693 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364746,207,021 - 6,212,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101976106
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,382,221 - 40,391,693 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364746,207,021 - 6,212,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,163,055 - 20,186,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,161,253 - 20,186,518 (-)EnsemblGRCh38hg38GRCh38
GRCh37120,489,548 - 20,513,011 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,363,071 - 20,374,274 (-)NCBINCBI36Build 36hg18NCBI36
Celera118,813,602 - 18,824,805 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef118,736,223 - 18,747,426 (-)NCBIHuRef
CHM1_1120,600,161 - 20,611,364 (-)NCBICHM1_1
T2T-CHM13v2.0119,986,700 - 20,010,162 (-)NCBIT2T-CHM13v2.0
Pla2g2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,452,636 - 138,471,886 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,452,103 - 138,473,443 (+)EnsemblGRCm39 Ensembl
GRCm384138,725,325 - 138,744,575 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,724,792 - 138,746,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv374138,281,240 - 138,300,490 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,997,817 - 138,016,649 (+)NCBIMGSCv36mm8
Celera4140,507,993 - 140,527,237 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.54NCBI
Pla2g2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,241,142 - 156,262,368 (+)NCBIGRCr8
mRatBN7.25150,959,365 - 150,981,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,959,182 - 150,981,377 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,657,591 - 153,676,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,431,891 - 155,451,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,413,404 - 155,432,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,163,672 - 157,187,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,165,341 - 157,187,643 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,903,738 - 160,929,464 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,536,546 - 157,555,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,300,874 - 157,568,245 (+)NCBI
Celera5149,347,976 - 149,367,111 (+)NCBICelera
Cytogenetic Map5q36NCBI
Pla2g2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955452770,952 - 783,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955452771,031 - 783,323 (-)NCBIChiLan1.0ChiLan1.0
PLA2G2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,931,634 - 206,955,707 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11206,048,484 - 206,072,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,118,341 - 19,142,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,162,076 - 20,173,928 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,161,553 - 20,176,092 (-)Ensemblpanpan1.1panPan2
PLA2G2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,609,852 - 78,700,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,193,206 - 75,214,536 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,245,924 - 79,267,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,183,293 - 79,267,303 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,065,084 - 76,086,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,071,825 - 77,093,190 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,142,515 - 78,163,886 (+)NCBIUU_Cfam_GSD_1.0
PLA2G2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1678,433,168 - 78,446,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,624,176 - 72,644,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120112,365,898 - 112,389,268 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20112,375,528 - 112,389,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660333,795,009 - 3,887,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247645,257,955 - 5,269,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040289154   ⟹   XP_040145088
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505840,382,221 - 40,391,693 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040145088 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040145088   ⟸   XM_040289154


Additional Information

Database Acc Id Source(s)
NCBI Gene Pla2g2c ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101976106  uncharacterized LOC101976106  Pla2g2c  phospholipase A2 group IIC  Symbol and/or name change 5135510 APPROVED