Scl60 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl60 (Serum cholesterol level QTL 60) Rattus norvegicus

Symbol: Scl60
Name: Serum cholesterol level QTL 60
RGD ID: 2302369
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.13
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25143,608,201 - 161,165,651RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05149,568,588 - 167,739,697RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05153,255,850 - 171,364,652RGDRnor5.0
RGSC_v3.45150,236,110 - 167,844,737RGDRGSC3.4
Cross Type: intercross
Strains Crossed: WOKW/K DA/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/K  (IEA)
WOKW/K  (IEA)

References

References - curated
1. Kovacs P, etal., Biochem Biophys Res Commun 2000 Mar 24;269(3):660-5.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620782Ptpruprotein tyrosine phosphatase, receptor type, U5143950542144024791Rat
3208Mecrmitochondrial trans-2-enoyl-CoA reductase5144029684144056373Rat
1561347Srsf4serine and arginine rich splicing factor 45144060981144090798Rat
1585251Tmem200btransmembrane protein 200B5144107737144110551Rat
1564762Epb41erythrocyte membrane protein band 4.15144110010144264037Rat
3233Oprd1opioid receptor, delta 15144306188144340960Rat
1311321Ythdf2YTH N(6)-methyladenosine RNA binding protein 25144381426144407126Rat
1563208Gmeb1glucocorticoid modulatory element binding protein 15144421151144462448Rat
40946862LOC120102991uncharacterized LOC1201029915144438568144441736Rat
41138788LOC120103286U11 spliceosomal RNA5144468942144469075Rat
1592841Taf12TATA-box binding protein associated factor 125144472816144490299Rat
1593983Rab42RAB42, member RAS oncogene family5144494860144498873Rat
41270116LOC120102992uncharacterized LOC1201029925144504380144507210Rat
41291583LOC120103261small nucleolar RNA SNORA16B/SNORA16A family5144505211144505346Rat
41040477LOC120103274small nucleolar RNA SNORA445144506127144506255Rat
41032323Snora61small nucleolar RNA, H/ACA box 615144506420144506549Rat
41019850Snord99small nucleolar RNA, C/D box 995144506901144506974Rat
619995Trnau1aptRNA selenocysteine 1 associated protein 15144507044144524142Rat
1592835Rcc1regulator of chromosome condensation 15144526025144544445Rat
41297211LOC120103240small nucleolar RNA SNORA73 family5144545179144545382Rat
41162724LOC120103239small nucleolar RNA SNORA73 family5144545599144545802Rat
1592823Phactr4phosphatase and actin regulator 45144549350144621259Rat
41253011LOC120102993ferritin light chain 1-like5144647550144648460Rat
1592757Med18mediator complex subunit 185144663316144668652Rat
1589762LOC302393similar to ribosomal protein S85144689427144690172Rat
1566319Sesn2sestrin 25144702287144721241Rat
2181Atp5if1ATP synthase inhibitory factor subunit 15144738950144742668Rat
1306024Dnajc8DnaJ heat shock protein family (Hsp40) member C85144745055144763106Rat
4888537Mir3583microRNA 35835144751986144752075Rat
61897Ptafrplatelet-activating factor receptor5144765770144795057Rat
1309932Eya3EYA transcriptional coactivator and phosphatase 35144806523144934522Rat
7539556LOC102548282uncharacterized LOC1025482825144811968144823367Rat
1305649Xkr8XK related 85144938061144945195Rat
1307458Smpdl3bsphingomyelin phosphodiesterase, acid-like 3B5144944618144966703Rat
41293031LOC120103193U6 spliceosomal RNA5144959028144959134Rat
619714Rpa2replication protein A25144976789144989445Rat
1561016Themis2thymocyte selection associated family member 25144991110145006347Rat
41174182LOC120102994uncharacterized LOC1201029945145006541145008721Rat
1561465RGD1561465similar to RIKEN cDNA 2900010J235145014246145014612Rat
1306280Ppp1r8protein phosphatase 1, regulatory subunit 85145031632145048753Rat
41159406LOC120103195U6 spliceosomal RNA5145036208145036314Rat
41243667LOC120103287small Cajal body-specific RNA 15145043986145044149Rat
620977Stx12syntaxin 125145062978145092423Rat
1305162Fam76afamily with sequence similarity 76, member A5145107491145135734Rat
41128279LOC120102995uncharacterized LOC1201029955145160776145164470Rat
11424954LOC108351145uncharacterized LOC1083511455145176326145184466Rat
621319FgrFGR proto-oncogene, Src family tyrosine kinase5145189814145219571Rat
1310031Ahdc1AT hook, DNA binding motif, containing 15145228228145294170Rat
41142402LOC120102996uncharacterized LOC1201029965145266875145287557Rat
41240402LOC120102997uncharacterized LOC1201029975145275905145286188Rat
1307299Wasf2WASP family member 25145336816145402041Rat
628686Gpr3G protein-coupled receptor 35145411500145414621Rat
2323068Cd164l2CD164 molecule like 25145414805145427747Rat
1304625Map3k6mitogen-activated protein kinase kinase kinase 65145440126145452213Rat
1310715Sytl1synaptotagmin-like 15145452524145463114Rat
1304793Tmem222transmembrane protein 2225145465847145477932Rat
1310362Wdtc1WD and tetratricopeptide repeats 15145491461145559631Rat
3718Slc9a1solute carrier family 9 member A15145576341145629630Rat
1308967Tent5bterminal nucleotidyltransferase 5B5145695358145702668Rat
1582917Trnp1TMF1-regulated nuclear protein 15145706427145713279Rat
1303271Kdf1keratinocyte differentiation factor 15145744753145758150Rat
41034516LOC120103102uncharacterized LOC1201031025145745090145751121Rat
3215Nudcnuclear distribution C, dynein complex regulator5145758006145771390Rat
621032Nr0b2nuclear receptor subfamily 0, group B, member 25145779294145782609Rat
1582990LOC688917hypothetical protein LOC6889175145791131145791503Rat
1311216Gpatch3G patch domain containing 35145798069145809250Rat
1311749Gpn2GPN-loop GTPase 25145809455145817252Rat
1309334Zdhhc18zinc finger DHHC-type palmitoyltransferase 185145821534145859989Rat
41181073LOC120103385U6 spliceosomal RNA5145862177145862283Rat
1584911LOC366479similar to mitochondrial carrier protein MGC43995145867744145869358Rat
40937626LOC12010310360S ribosomal protein L35a-like5145871672145873934Rat
1309526Pigvphosphatidylinositol glycan anchor biosynthesis, class V5145889642145901533Rat
1310500Arid1aAT-rich interaction domain 1A5145908181145981609Rat
41015436LOC120102998uncharacterized LOC1201029985145932814145969680Rat
40965551LOC120102999uncharacterized LOC1201029995145979185145980634Rat
41132000LOC120103179H/ACA ribonucleoprotein complex subunit 3-like5146019641146019835Rat
41002558LOC120103000uncharacterized LOC1201030005146027491146037318Rat
41079011LOC12010300140S ribosomal protein S20-like5146070683146072034Rat
620675Rps6ka1ribosomal protein S6 kinase A15146079018146118272Rat
1586834LOC683456similar to basic transcription factor 35146185726146186680Rat
1593518LOC689346similar to 60S ribosomal protein L37a5146187894146188407Rat
620649Hmgn2high mobility group nucleosomal binding domain 25146192126146195580Rat
1311560Dhddsdehydrodolichyl diphosphate synthase subunit5146198359146224479Rat
41133365LOC120103002uncharacterized LOC1201030025146224474146226165Rat
1566408Lin28alin-28 homolog A5146227119146244122Rat
2323855Zfp683zinc finger protein 6835146277972146285856Rat
1308621Crybg2crystallin beta-gamma domain containing 25146286406146318417Rat
620627Cd52CD52 molecule5146319789146321348Rat
2322860LOC100360087ferritin light chain 1-like5146322754146323689Rat
620769Ubxn11UBX domain protein 115146329666146353529Rat
1308118Sh3bgrl3SH3 domain binding glutamate-rich protein like 35146354152146355525Rat
1311520Cep85centrosomal protein 855146356575146404155Rat
1585597UmodlUromoduilin-like5146404028146421646Rat
1565213Catsper4cation channel, sperm associated 45146427682146447346Rat
1311879Cnksr1connector enhancer of kinase suppressor of Ras 15146447495146458332Rat
40986275LOC120103003uncharacterized LOC1201030035146447967146449456Rat
1310179Zfp593zinc finger protein 5935146462670146464998Rat
11378091LOC108351043uncharacterized LOC1083510435146465589146469760Rat
1564994Fam110dfamily with sequence similarity 110, member D5146471048146474019Rat
41174711LOC120103004uncharacterized LOC1201030045146483676146486297Rat
1307476Pdik1lPDLIM1 interacting kinase 1 like5146495115146507363Rat
619964Trim63tripartite motif containing 635146533492146547332Rat
3707Slc30a2solute carrier family 30 member 25146559733146571957Rat
1309572Extl1exostosin-like glycosyltransferase 15146573911146589115Rat
40961714LOC120103005uncharacterized LOC1201030055146575250146584560Rat
41076724LOC120103006uncharacterized LOC1201030065146587011146600907Rat
631399Pafah2platelet-activating factor acetylhydrolase 25146607050146636203Rat
7574873LOC102546373uncharacterized LOC1025463735146643874146659857Rat
2992Stmn1stathmin 15146680757146687154Rat
7517157LOC102546455uncharacterized LOC1025464555146705497146708855Rat
1563621Paqr7progestin and adipoQ receptor family member 75146709085146720577Rat
1589922Aunipaurora kinase A and ninein interacting protein5146722157146736233Rat
1305453Mtfr1lmitochondrial fission regulator 1-like5146736927146746891Rat
1304574Selenonselenoprotein N5146748638146764656Rat
1309672Man1c1mannosidase, alpha, class 1C, member 15146774282146913257Rat
41035181NEWGENE_40926764transfer RNA proline (anticodon AGG)5146832261146832333Rat
1563417Ldlrap1low density lipoprotein receptor adaptor protein 15146955607146978601Rat
41173447LOC120103180peptidyl-prolyl cis-trans isomerase A-like5146987474146988138Rat
1561685Maco1macoilin 15147012416147075265Rat
620451RhdRh blood group, D antigen5147087479147121716Rat
1305638Tmem50atransmembrane protein 50A5147123670147138859Rat
1359529Rsrp1arginine and serine rich protein 15147147774147151523Rat
621592Syf2SYF2 pre-mRNA-splicing factor5147156492147164416Rat
7663941LOC102551013uncharacterized LOC1025510135147289290147290615Rat
620082Runx3RUNX family transcription factor 35147393926147419161Rat
61857Clic4chloride intracellular channel 45147456819147513278Rat
41008082LOC120103007uncharacterized LOC1201030075147550251147563338Rat
1311258Srrm1serine and arginine repetitive matrix 15147559515147591895Rat
1587554Ncmapnoncompact myelin associated protein5147608042147623266Rat
1311826Rcan3RCAN family member 35147650935147671881Rat
1563439Nipal3NIPA-like domain containing 35147687310147725838Rat
1560169Stpg1sperm-tail PG-rich repeat containing 15147717084147769792Rat
7489045Mir6333microRNA 63335147725453147725563Rat
1308320Grhl3grainyhead-like transcription factor 35147774160147806338Rat
41112512LOC120103267small nucleolar RNA SNORD1045147790279147790348Rat
1566032LOC500567similar to RIKEN cDNA 1700029M205147857672147859985Rat
1562689Ifnlr1interferon, lambda receptor 15147919547147942328Rat
1559655Il22ra1interleukin 22 receptor subunit alpha 15147961496147986296Rat
1310060Myom3myomesin 35147992737148043282Rat
11384347LOC108351046uncharacterized LOC1083510465148064624148072253Rat
40978405LOC12010310460S acidic ribosomal protein P2-like5148078578148079869Rat
1311067Srsf10serine and arginine rich splicing factor 105148088765148102964Rat
41131623LOC120103008uncharacterized LOC1201030085148089148148090623Rat
1642418Pnrc2proline-rich nuclear receptor coactivator 25148103966148106950Rat
619713Cnr2cannabinoid receptor 25148125222148151548Rat
2636Fuca1alpha-L-fucosidase 15148152718148169972Rat
620554Hmgcl3-hydroxy-3-methylglutaryl-CoA lyase5148178203148192072Rat
621493GaleUDP-galactose-4-epimerase5148193886148198392Rat
620210Lypla2lysophospholipase 25148198466148203062Rat
1308048Pithd1PITH domain containing 15148205995148216511Rat
3827Eloaelongin A5148231600148246760Rat
1308681Rpl11ribosomal protein L115148274060148277708Rat
40970091LOC120103009uncharacterized LOC1201030095148311186148318268Rat
1563135RGD1563135hypothetical gene supported by NM_0225045148321178148322080Rat
41244231LOC120103010uncharacterized LOC1201030105148347098148365131Rat
2860Id3inhibitor of DNA binding 3, HLH protein5148372784148374353Rat
1593939E2f2E2F transcription factor 25148399193148422595Rat
1593929Asap3ArfGAP with SH3 domain, ankyrin repeat and PH domain 35148433382148476027Rat
1311369Tcea3transcription elongation factor A35148476941148509452Rat
1564482RGD1564482RGD15644825148516031148517519Rat
1310584Zfp46zinc finger protein 465148519403148529903Rat
631348Hnrnprheterogeneous nuclear ribonucleoprotein R5148542999148574888Rat
40929551LOC120103181uncharacterized LOC1201031815148629572148633379Rat
2847Htr1d5-hydroxytryptamine receptor 1D5148655979148676534Rat
61839Luzp1leucine zipper protein 15148706094148781616Rat
1585115LOC690098similar to small inducible cytokine subfamily E, member 15148741757148744478Rat
9306104LOC103692495uncharacterized LOC1036924955148767471148771767Rat
1562975Kdm1alysine demethylase 1A5148782976148838319Rat
41354133LOC120103011glyceraldehyde-3-phosphate dehydrogenase-like5148832373148832838Rat
7515741Tex46testis expressed 465148849293148853685Rat
41335655LOC120103012uncharacterized LOC1201030125148862432148864196Rat
1561426Lactbl1lactamase beta like 15148864949148879373Rat
1564232Ephb2Eph receptor B25148889574149077027Rat
2229C1qbcomplement C1q B chain5149118843149124394Rat
1306828C1qccomplement C1q C chain5149127424149130732Rat
1306716C1qacomplement C1q A chain5149133635149136482Rat
708543Epha8Eph receptor A85149166107149193498Rat
1309866Zbtb40zinc finger and BTB domain containing 405149216496149283746Rat
40993789LOC120103324small nucleolar RNA SNORA175149261744149261873Rat
7523567LOC102552931uncharacterized LOC1025529315149304987149309952Rat
621348Wnt4Wnt family member 45149513573149535415Rat
71043Cdc42cell division cycle 425149555069149593239Rat
1307819Cela3bchymotrypsin like elastase 3B5149628773149636937Rat
1582902LOC690206hypothetical protein LOC6902065149659136149662944Rat
621770Hspg2heparan sulfate proteoglycan 25149677437149778594Rat
1564888Ldlrad2low density lipoprotein receptor class A domain containing 25149778795149788335Rat
1582868LOC690242similar to interferon induced transmembrane protein 2 (1-8D)5149795885149796365Rat
735213Usp48ubiquitin specific peptidase 485149800189149867838Rat
1309908Rap1gapRap1 GTPase-activating protein5149873987149939254Rat
2100Alplalkaline phosphatase, biomineralization associated5149951397150006424Rat
41358971LOC120103369U4 spliceosomal RNA5150055348150055488Rat
620293Ece1endothelin converting enzyme 15150077679150179375Rat
1311370Eif4g3eukaryotic translation initiation factor 4 gamma, 35150197410150418363Rat
7577956LOC102553758uncharacterized LOC1025537585150254449150256398Rat
41340596LOC120103013uncharacterized LOC1201030135150349502150353617Rat
7710320LOC102553854macrophage migration inhibitory factor-like5150429739150435266Rat
735099Hp1bp3heterochromatin protein 1, binding protein 35150435781150463004Rat
1305952Sh2d5SH2 domain containing 55150469738150480615Rat
1562511Kif17kinesin family member 175150482288150521471Rat
1308970Ddostdolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit5150522297150529413Rat
1305769Pink1PTEN induced kinase 15150530523150542635Rat
1311101Cdacytidine deaminase5150556615150583231Rat
1560959Fam43bfamily with sequence similarity 43, member B5150610651150613707Rat
1309944Mul1mitochondrial E3 ubiquitin protein ligase 15150652812150661863Rat
708430Camk2n1calcium/calmodulin-dependent protein kinase II inhibitor 15150674819150676600Rat
41189039LOC12010318260S ribosomal protein L12-like5150695568150697827Rat
41097462LOC120103014uncharacterized LOC1201030145150731447150756572Rat
11410510LOC108351047uncharacterized LOC1083510475150782452150803056Rat
1308559Vwa5b1von Willebrand factor A domain containing 5B15150792959150864849Rat
11399691LOC108351048uncharacterized LOC1083510485150878366150941143Rat
1308335Ubxn10UBX domain protein 105150953772150959608Rat
3340Pla2g2cphospholipase A2, group IIC5150959365150981388Rat
1597305Pla2g2fphospholipase A2, group IIF5150986788150993175Rat
1309862Pla2g2dphospholipase A2, group IID5151016010151022531Rat
62051Pla2g5phospholipase A2, group V5151041339151109433Rat
41359865LOC120103246U1 spliceosomal RNA5151071473151071629Rat
620857Pla2g2aphospholipase A2 group IIA5151076442151079019Rat
1309611Pla2g2ephospholipase A2, group IIE5151121392151127157Rat
1560468Otud3OTU deubiquitinase 35151135826151162207Rat
1596075Rnf186ring finger protein 1865151210492151211716Rat
1566357Tmco4transmembrane and coiled-coil domains 45151216499151294726Rat
62044Htr65-hydroxytryptamine receptor 65151295269151312853Rat
40978356LOC120103015uncharacterized LOC1201030155151317157151325656Rat
3151Nbl1NBL1, DAN family BMP antagonist5151318752151329948Rat
1560187Micos10mitochondrial contact site and cristae organizing system subunit 105151341124151367403Rat
41362887LOC120103016uncharacterized LOC1201030165151366710151367798Rat
41043490NEWGENE_40926764transfer RNA proline (anticodon AGG)5151400838151400918Rat
41327343LOC120103017uncharacterized LOC1201030175151406408151413716Rat
1359099Capzbcapping actin protein of muscle Z-line subunit beta5151435600151535409Rat
1311627Slc66a1solute carrier family 66 member 15151537870151552338Rat
620311Akr7a2aldo-keto reductase family 7, member A25151552375151560914Rat
11403420LOC10835104960S ribosomal protein L21 pseudogene5151557706151558692Rat
41081152LOC12010301860S ribosomal protein L9-like5151561590151564762Rat
41396958LOC12010310540S ribosomal protein S21-like5151575060151575295Rat
628635Akr7a3aldo-keto reductase family 7 member A35151590968151601394Rat
1311709Mrto4mRNA turnover 4, ribosome maturation factor5151601780151608549Rat
1310427Emc1ER membrane protein complex subunit 15151608557151633888Rat
1563121Ubr4ubiquitin protein ligase E3 component n-recognin 45151635825151743931Rat
11510646Trnav-aac3transfer RNA valine (anticodon AAC) 35151685931151686002Rat
1624207Iffo2intermediate filament family orphan 25151831503151873075Rat
7489030Mir6215microRNA 62155151850759151850825Rat
1624206Aldh4a1aldehyde dehydrogenase 4 family, member A15151880002151905491Rat
61894Tas1r2taste 1 receptor member 25151909648151925345Rat
1564360Pax7paired box 75151996368152098023Rat
1309439Klhdc7akelch domain containing 7A5152217016152224771Rat
41310584LOC120103106NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like5152238538152242340Rat
1310117Igsf21immunoglobin superfamily, member 215152287834152512174Rat
40990336LOC120103019uncharacterized LOC1201030195152732403152760308Rat
1585585Arhgef10lRho guanine nucleotide exchange factor 10 like5152792247152935255Rat
41381585LOC120103021uncharacterized LOC1201030215152866852152870722Rat
41399912LOC120103020uncharacterized LOC1201030205152948438152954138Rat
41012019LOC120103022uncharacterized LOC1201030225152988982152994946Rat
1309986Rcc2regulator of chromosome condensation 25152994406153017223Rat
41224842LOC120103272small nucleolar RNA SNORA155153013761153013890Rat
1560424Padi6peptidyl arginine deiminase 65153022089153037376Rat
3290Padi4peptidyl arginine deiminase 45153041351153074412Rat
3289Padi3peptidyl arginine deiminase 35153089717153117146Rat
3287Padi1peptidyl arginine deiminase 15153119566153152034Rat
11392000Trnaa-ggc1transfer RNA alanine (anticodon GGC) 15153148357153148428Rat
7726360LOC102546563uncharacterized LOC1025465635153176011153177462Rat
7706312LOC102546642uncharacterized LOC1025466425153179682153185652Rat
3288Padi2peptidyl arginine deiminase 25153209053153251632Rat
1308598Sdhbsuccinate dehydrogenase complex iron sulfur subunit B5153264906153285570Rat
1307977Atp13a2ATPase cation transporting 13A25153292722153312143Rat
1306031Mfap2microfibril associated protein 25153312068153320266Rat
1305364Croccciliary rootlet coiled-coil, rootletin5153320962153363734Rat
40931018LOC120103023uncharacterized LOC1201030235153336474153344047Rat
735063Necap2NECAP endocytosis associated 25153370338153382753Rat
1591001LOC690831similar to chromosome 17 open reading frame 375153384604153386335Rat
2323583Rps21-ps1ribosomal protein S21, pseudogene 15153387133153387476Rat
41373048LOC120103386U6 spliceosomal RNA5153389988153390094Rat
1302954Spata21spermatogenesis associated 215153393309153419430Rat
1560286Szrd1SUZ RNA binding domain containing 15153418748153443286Rat
1304787Fbxo42F-box protein 425153451153153509569Rat
41150313LOC120103024ciliogenesis and planar polarity effector 2-like5153515263153522456Rat
1561421Cplane2ciliogenesis and planar polarity effector complex subunit 25153515507153516455Rat
11372222LOC108351054uncharacterized LOC1083510545153527374153541618Rat
1304766Arhgef19Rho guanine nucleotide exchange factor 195153536038153554203Rat
1307204Epha2Eph receptor A25153605644153634115Rat
2321550Rps27a-ps2ribosomal protein S27a, pseudogene 25153654975153655513Rat
1590955Fam131cfamily with sequence similarity 131, member C5153674459153690791Rat
68435Clcnkachloride voltage-gated channel Ka5153691208153706295Rat
628639Clcnkbchloride voltage-gated channel Kb5153710086153733162Rat
41308382LOC120103025uncharacterized LOC1201030255153713158153723668Rat
62021Hspb7heat shock protein family B (small) member 75153727782153731268Rat
1566083Srarpsteroid receptor associated and regulated protein5153740973153745084Rat
41131608NEWGENE_40926764transfer RNA proline (anticodon AGG)5153742582153742654Rat
1307143Zbtb17zinc finger and BTB domain containing 175153753508153774613Rat
1589867Spenspen family transcriptional repressor5153775287153848677Rat
41186360LOC120103026uncharacterized LOC1201030265153882102153885105Rat
1359551Fblim1filamin binding LIM protein 15153883946153915524Rat
1566169Tmem82transmembrane protein 825153927486153931942Rat
1359157Slc25a34solute carrier family 25, member 345153932081153936854Rat
1307005Plekhm2pleckstrin homology and RUN domain containing M25153939582153978625Rat
1311815Ddi2DNA damage inducible 1 homolog 25153989596154035342Rat
1308424Agmatagmatinase5154043665154074278Rat
1359395Dnajc16DnaJ heat shock protein family (Hsp40) member C165154073372154106246Rat
61867Casp9caspase 95154108872154126628Rat
2548Cela2achymotrypsin like elastase 2A5154126879154136630Rat
1308379Ctrcchymotrypsin C5154147314154156540Rat
1307585Efhd2EF-hand domain family, member D25154160945154176980Rat
41372683LOC120103027uncharacterized LOC1201030275154166191154176642Rat
1563444Fhad1forkhead associated phosphopeptide binding domain 15154191593154310442Rat
1565452Tmem51transmembrane protein 515154325853154375882Rat
1359147Kaznkazrin, periplakin interacting protein5154392793155381567Rat
41387749LOC120103133uncharacterized LOC1201031335154631950154641504Rat
41281683LOC120103135uncharacterized LOC1201031355154874182154881159Rat
7556798LOC102556543uncharacterized LOC1025565435155086112155117875Rat
41390844LOC120103134uncharacterized LOC1201031345155094047155098985Rat
41097338LOC12010313260S ribosomal protein L11-like5155368449155376939Rat
1594531Prdm2PR/SET domain 25155421066155531884Rat
9275519LOC103692503uncharacterized LOC1036925035155427014155438025Rat
41343775LOC120103347small nucleolar RNA SNORA175155523983155524131Rat
2324274LOC100362684ribosomal protein S20-like5155541736155542269Rat
1587379LOC298611alpha-tubulin pseudogene and flanks5155578986155580721Rat
61819Pdpnpodoplanin5155601691155635656Rat
41178188LOC12010318328S ribosomal protein S18c, mitochondrial-like5155653808155654252Rat
11357843LOC108351056uncharacterized LOC1083510565155683180155686367Rat
1311416Lrrc38leucine rich repeat containing 385155685495155707578Rat
1588644Pramef27PRAME family member 275155752765155759663Rat
1564061Pramef8PRAME family member 85155778135155793935Rat
40956350LOC120103184uncharacterized LOC1201031845155836337155842393Rat
1565680Oog1oogenesin 15155841222155844210Rat
11425965LOC108351099PRAME family member 12-like5155872609155880103Rat
1587378Pramef5PRAME family member 55155905179155907727Rat
1588616LOC691090similar to PRAME family member DJ1198H6.25155916280155919130Rat
1587479LOC691101similar to Kruppel-like factor 4 (gut)5155920984155975266Rat
2324757LOC100363133heat shock cognate 71 kDa protein-like5155934803155936915Rat
1565870Oog3oogenesin 35155941965155950037Rat
11422918LOC108351100PRAME family member 12-like5155975473155978753Rat
9144788LOC103692410uncharacterized LOC1036924105155998891156003422Rat
40938591LOC120103107PRAME family member 12-like5156009794156012390Rat
1306186RGD1306186similar to RIKEN cDNA 4930569K135156075011156081595Rat
41354771LOC120103108protein PRRC2C-like5156091936156094157Rat
1587447Pramef17PRAME family member 175156138800156142916Rat
1561813Pramef25PRAME family member 255156157471156167485Rat
1587437Pramef20PRAME family member 205156171125156175601Rat
1587431Pramef12PRAME family member 125156193666156197199Rat
1587426Cfap107cilia and flagella associated protein 1075156212385156231481Rat
7240728LOC101241876ubiquitin-conjugating enzyme E2H pseudogene5156222650156224392Rat
1563257Aadacl3arylacetamide deacetylase-like 35156244044156252163Rat
1584908LOC366497similar to pyruvate kinase 35156327765156333340Rat
1593379Rps4x-ps4ribosomal protein S4, X-linked, pseudogene 45156331496156332390Rat
1308878RGD1308878similar to arylacetamide deacetylase5156356868156366479Rat
1563334RGD1563334similar to novel protein similar to esterases5156426706156435333Rat
1565761Aadacl4arylacetamide deacetylase-like 45156514021156524567Rat
1559644RGD1559644similar to novel protein similar to esterases5156562957156601387Rat
1587396LOC691196similar to arylacetamide deacetylase5156616340156660184Rat
41325105LOC120102918sugar transporter SWEET1-like5156652637156654288Rat
40938168LOC120103322U2 spliceosomal RNA5156731160156731307Rat
41252684LOC120103202U1 spliceosomal RNA5156736935156737098Rat
7688236LOC102550246uncharacterized LOC1025502465156744643156747664Rat
1305584Dhrs3dehydrogenase/reductase 35156747939156782420Rat
41335047LOC120103028uncharacterized LOC1201030285156749125156751603Rat
1308403Vps13dvacuolar protein sorting 13 homolog D5156830509157055895Rat
7497539LOC10255680460S ribosomal protein L36-like5157058147157063838Rat
621238Tnfrsf1bTNF receptor superfamily member 1B5157070642157104216Rat
3879Tnfrsf8TNF receptor superfamily member 85157123183157168421Rat
2319953LOC100361514hypothetical LOC1003615145157260727157263090Rat
9212267LOC103690344zinc finger protein 501-like5157289647157297045Rat
41185038LOC120103190U6 spliceosomal RNA5157415839157415945Rat
7623967LOC102551014zinc finger protein 624-like5157422388157447357Rat
7603077LOC102550823casein kinase I isoform gamma-3-like5157457865157462163Rat
1586278LOC691228similar to reduced expression 25157462164157467683Rat
7694630LOC102551209uncharacterized LOC1025512095157475576157476090Rat
2319680LOC100361693zinc finger protein 53-like5157509762157513970Rat
9461644LOC10369251960S ribosomal protein L9 pseudogene5157529246157529919Rat
6484979LOC100912971zinc finger protein 808-like5157578907157600857Rat
6499833LOC100910191casein kinase I isoform gamma-3-like5157602768157604408Rat
1586256LOC691254hypothetical protein LOC6912545157624407157655095Rat
41309319LOC120103192U6 spliceosomal RNA5157661668157661774Rat
41208288LOC120103030MLV-related proviral Env polyprotein-like5157667260157668605Rat
40971860LOC120103033uncharacterized LOC1201030335157687406157722649Rat
41054755LOC120103207U6 spliceosomal RNA5157757303157757409Rat
41358647LOC120103031casein kinase I-like5157777077157779988Rat
1598209LOC500584similar to casein kinase 1, gamma 3 isoform 25157780156157799489Rat
41014938LOC120103029zinc finger protein 501-like5157854013157869026Rat
41187377LOC120103211U6 spliceosomal RNA5157883496157883602Rat
1586249Rex2reduced expression 25157884460157919072Rat
41351863LOC120103032casein kinase I-like5157896750157899866Rat
41051487LOC120103109gastrula zinc finger protein XlCGF49.1-like5157919226157928288Rat
1625998Vom2r-ps78vomeronasal 2 receptor, pseudogene 785157972263157972466Rat
41262442LOC120103205U6 spliceosomal RNA5157996975157997081Rat
41345120LOC120103034casein kinase I-like5157998033158006335Rat
40962626LOC120093167zinc finger protein 664-like5158006486158028857Rat
11425502LOC108351057uncharacterized LOC1083510575158056614158075847Rat
1561413RGD1561413similar to BC021442 protein5158083294158121395Rat
9321252LOC103692508malate dehydrogenase, mitochondrial pseudogene5158094686158096879Rat
40937261LOC120103200U6 spliceosomal RNA5158193202158193308Rat
1565622RGD1565622RGD15656225158197614158206543Rat
1586231LOC691280similar to Zinc finger protein 180 (HHZ168)5158264875158285036Rat
1587376Miipmigration and invasion inhibitory protein5158292510158299531Rat
628843Mfn2mitofusin 25158304285158335502Rat
621382Plod1procollagen-lysine, 2-oxoglutarate 5-dioxygenase 15158340674158367581Rat
1305350RGD1305350similar to RIKEN cDNA 2510039O185158371925158378195Rat
3194Nppbnatriuretic peptide B5158416813158418175Rat
3193Nppanatriuretic peptide A5158429042158430351Rat
1305379Clcn6chloride voltage-gated channel 65158434299158465174Rat
1309952Mthfrmethylenetetrahydrofolate reductase5158465248158484999Rat
9312074LOC103692509NHP2-like protein 1 pseudogene5158486178158487351Rat
7658417LOC102551309uncharacterized LOC1025513095158495514158505671Rat
1359346Agtrapangiotensin II receptor-associated protein5158507427158519036Rat
7646732LOC102551534uncharacterized LOC1025515345158519138158525313Rat
7635238LOC102551596uncharacterized LOC1025515965158527525158537091Rat
1585098Draxindorsal inhibitory axon guidance protein5158530149158563457Rat
11399174LOC10835105860S ribosomal protein L35a pseudogene5158543679158544116Rat
1307499Mad2l2mitotic arrest deficient 2 like 25158563545158576698Rat
620418Fbxo6F-box protein 65158576729158582520Rat
1562463Fbxo44F-box protein 445158583363158592510Rat
621751Fbxo2F-box protein 25158592926158598355Rat
11370875LOC108351059uncharacterized LOC1083510595158642708158648830Rat
1305820Disp3dispatched RND transporter family member 35158672015158720806Rat
7568401LOC102551951uncharacterized LOC1025519515158790419158814003Rat
1309588Ubiad1UbiA prenyltransferase domain containing 15158856582158880490Rat
41385573LOC120103279U1 spliceosomal RNA5158878885158879004Rat
68371Mtormechanistic target of rapamycin kinase5158884856158994311Rat
7553363Angptl7angiopoietin like 75158932094158937597Rat
41178027LOC120103237U6 spliceosomal RNA5158992110158992191Rat
1593248Exosc10exosome component 105158995318159018946Rat
620796Srmspermidine synthase5159025919159029076Rat
620214Masp2MBL associated serine protease 25159035892159049561Rat
1310906TardbpTAR DNA binding protein5159050518159062218Rat
41353534LOC120103280small nucleolar RNA SNORA215159058554159058689Rat
1585063LOC691354hypothetical protein LOC6913545159075217159110642Rat
1583785LOC366502hypothetical gene supported by NM_0229495159083415159084154Rat
9103835LOC103692510uncharacterized LOC1036925105159177068159182477Rat
1585054LOC691363hypothetical protein LOC6913635159193171159193526Rat
1563533Casz1castor zinc finger 15159243965159393935Rat
40976780LOC120103035uncharacterized LOC1201030355159315651159317385Rat
41005014LOC120103036uncharacterized LOC1201030365159385958159387911Rat
68336Pex14peroxisomal biogenesis factor 145159399776159536260Rat
620334DffaDNA fragmentation factor subunit alpha5159540718159553639Rat
2383Cortcortistatin5159560591159562032Rat
5128728Cenpscentromere protein S5159563917159573534Rat
1583832Pgdphosphogluconate dehydrogenase5159582746159598945Rat
621520Kif1bkinesin family member 1B5159607697159742778Rat
7740951LOC102547502uncharacterized LOC1025475025159750135159753986Rat
1304738Ube4bubiquitination factor E4B5159766829159870509Rat
9393794LOC103692512uncharacterized LOC1036925125159886635159888454Rat
1562168Rbp7retinol binding protein 75159889723159894338Rat
1310996Nmnat1nicotinamide nucleotide adenylyltransferase 15159910242159928201Rat
1309253Lzicleucine zipper and CTNNBIP1 domain containing5159928260159941512Rat
1562749Ctnnbip1catenin, beta-interacting protein 15159961961160010942Rat
41237407LOC120103037uncharacterized LOC1201030375160012529160022372Rat
1306458Clstn1calsyntenin 15160031235160094585Rat
41256277LOC120103038uncharacterized LOC1201030385160085882160092450Rat
1310990Pik3cdphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta5160094952160142962Rat
41104095LOC120103039uncharacterized LOC1201030395160121608160136130Rat
1583947Tmem201transmembrane protein 2015160166240160188874Rat
1583942Slc25a33solute carrier family 25 member 335160195040160219961Rat
7665827LOC102548220uncharacterized LOC1025482205160221868160230064Rat
11081182LOC10012536640S ribosomal protein S25160315121160316979Rat
40999891LOC120103040uncharacterized LOC1201030405160327597160335926Rat
7685779LOC102548366uncharacterized LOC1025483665160334477160342093Rat
1309319Spsb1splA/ryanodine receptor domain and SOCS box containing 15160358292160418541Rat
41076681LOC120103041uncharacterized LOC1201030415160363004160374305Rat
41197676LOC12010311040S ribosomal protein S25-like5160379408160379775Rat
1306562H6pdhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)5160434499160470203Rat
9106117LOC103692514uncharacterized LOC1036925145160492438160536093Rat
2325584Mir34amicroRNA 34a5160533002160533103Rat
1311096Gpr157G protein-coupled receptor 1575160550703160566432Rat
68328Slc2a5solute carrier family 2 member 55160583055160609994Rat
41108681NEWGENE_40926764transfer RNA proline (anticodon AGG)5160593071160593143Rat
1583902Slc2a7solute carrier family 2 member 75160624793160643994Rat
70516Car6carbonic anhydrase 65160658104160676644Rat
40957798LOC120103042uncharacterized LOC1201030425160700913160702509Rat
2553Eno1enolase 15160719951160731337Rat
41134297LOC120103043uncharacterized LOC1201030435160741231160746262Rat
629475Rerearginine-glutamic acid dipeptide repeats5160765855161097678Rat
11484356LOC108351064small nuclear ribonucleoprotein G pseudogene5160808304160808653Rat
41403641LOC120103044uncharacterized LOC1201030445160819820160826047Rat
7489027Mir6332microRNA 63325160837304160837424Rat
11382308LOC108351072LYR motif-containing protein 1-like5160985501160990216Rat
708502Slc45a1solute carrier family 45, member 15161105137161129375Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10455D5Wox21115147939831147939945Ratregion
10490D5Uwm51735147340163147340334Ratregion
10491D5Wox142255147340196147340421Ratregion
10496D5Mco181935150175116150175316Ratregion
10517D5Arb142565154137169154137426Ratregion
11001D5Wox101615158427876158428037Ratregion
11002D5Mit151405158430406158430550Ratregion
34136D5Mgh212505144377876144378094Ratregion
34168D5Mgh221445151005994151006154Ratregion
34206D5Mgh151595161165494161165651Ratregion
34210D5Mgh141505143608201143608494Ratregion
34210D5Mgh141505143608344143608494Ratregion
33702D5Mit161985154091335154091525Ratregion
36115D5Rat391415146401580146401721Ratregion
36207D5Rat471215156756326156756443Ratregion
36275D5Rat571445148607142148607290Ratregion
35348D5Rat451535152630083152630236Ratregion
37148D5Rat432005145100412145100618Ratregion
37812D5Rat1052135148668967148669178Ratregion
37864D5Rat932475147465483147465714Ratregion
37936D5Rat941885150732239150732427Ratregion
36396D5Mgh311345154793327154793461Ratregion
36598D5Rat441585152400282152400440Ratregion
36628D5Rat481515159849133159849265Ratregion
34855D5Rat422875149613494149613779Ratregion
35825D5Rat411395148924708148924837Ratregion
35835D5Rat661705149701273149701442Ratregion
35873D5Rat461115153178212153178323Ratregion
39764D5Rat1742465145881837145882077Ratregion
39864D5Rat1761595150907350150907509Ratregion
38380D5Rat792145149947006149947202Ratregion
40654D5Rat1772135154083245154083454Ratregion
40740D5Rat1812275159171133159171350Ratregion
38916D5Rat1062005150298170150298378Ratregion
38958D5Rat672085152373157152373365Ratregion
39168D5Rat992355151113452151113693Ratregion
39176D5Rat1032005144358090144358281Ratregion
39478D5Rat2042365151018615151018848Ratregion
42762D5Rat2402095144436628144436850Ratregion
42764D5Rat2621085149303295149303406Ratregion
42766D5Rat2422025151069493151069686Ratregion
42767D5Rat2431335159978616159978755Ratregion
42768D5Rat2602495158424424158424661Ratregion
41492D5Rat1781745154828214154828377Ratregion
41512D5Rat1751385148429447148429595Ratregion
42320D5Rat561525152364409152364562Ratregion
41044D8Rat1422145159273379159273583Ratregion
41070D5Rat1801495159335183159335326Ratregion
44579D9Got1292965155486102155486134Ratregion
43873D5Got1141865159246389159246578Ratregion
43989D5Got872345148442249148442480Ratregion
43990D5Got881615149364580149364741Ratregion
43992D5Got1361175151308239151308356Ratregion
43993D5Got921275151308242151308369Ratregion
43995D5Got911845153109722153109906Ratregion
43996D5Got1041655157045927157046092Ratregion
43997D5Got1011255156801047156801172Ratregion
43998D5Got1371175156596715156596832Ratregion
43999D5Got982385156743652156743889Ratregion
44001D5Got971665157199462157199628Ratregion
44002D5Got963475155532103155532450Ratregion
44003D5Got1021395153559441153559577Ratregion
44007D5Got1132855160621260160621545Ratregion
44009D5Got1101985160311252160311450Ratregion
44010D5Got1052525158564104158564356Ratregion
44012D5Got1061655159098297159098460Ratregion
60473D5Got1003395153620771153621110Ratregion
60494D5Got831945145205556145205750Ratregion
60495D5Got852655147915863147916128Ratregion
60496D5Got891715149802648149802819Ratregion
60497D5Got942475152155183152155430Ratregion
69512D5Uwm401725148012677148012915Ratregion
69514D5Uwm411365148394176148394316Ratregion
69516D5Uwm421965146995919146996127Ratregion
69520D5Uwm441245151224880151224992Ratregion
69522D5Uwm452045151985430151985630Ratregion
69524D5Uwm461605153933738153933898Ratregion
69526D5Uwm472195153632528153632741Ratregion
69529D5Uwm492495159910699159910952Ratregion
69565D5Uwm552305148807519148807749Ratregion
625814D5Got862155147145828147146043Ratregion
60013D12Got222395148499252148499491Ratregion
62475D1Uia41405146042096146042138Ratregion
66405D5Mco12535147732795147733037Ratregion
66704D5Mco351655147440770147440939Ratregion
67772D5Uwm31415147489702147489865Ratregion
1630702D5Got2511415160701668160701809Ratregion
1631337D5Got2691755156007199156007374Ratregion
1579101D18Chm132255153685212153685449Ratregion
1628659D5Mco591505147440759147440909Ratregion
1628677D5Got2771365148160391148160527Ratregion
1641627D8Mco22525147440770147441022Ratregion
1640741D5Mco3181465147440810147440956Ratregion
1635336D5Kyo11995149859140149859339Ratregion
1635827D5Wox333455158414892158415237Ratregion
1636406D5Wox275151090285151090477Ratregion
1633707D5Wox432185148528848148529066Ratregion
1634858D5Got2631765153628841153629082Ratregion
7206738PZB01112_B737485146036806146037480Ratregion
7206072Srm05159028206159028887Ratregion
7206450Id314645148372760148374224Ratregion
7206480Mad2l21455158572165158572310Ratregion
5035913PMC305683P34755148372820148373295Ratregion
5035951PMC316718P14945158429171158429665Ratregion
5036075Afar1695151560717151560886Ratregion
5038958RH1274312125147123901147124113Ratregion
7206402mMECIR6337715160404536160405309Ratregion
7206514UniSTS:5468138125160440463160441275Ratregion
7206686UniSTS:5475232175158429341158429558Ratregion
5036354UniSTS:1434181895148675419148675608Ratregion
5036376Itga205151753551151753981Ratregion
5039142RH1275362045161097307161097511Ratregion
5039156RH1275442075145031558145031765Ratregion
5036883AU0495052075148111572148111779Ratregion
5036975AU0498002005143800920143801118Ratregion
5037131HSC11D0222825159051958159052240Ratregion
5037139A001V191645144381904144382069Ratregion
5037149A009Q18955146495305146495400Ratregion
5035596RH687561335145400400145400533Ratregion
5031274PMC123178P15135158429113158429626Ratregion
5025950RH1303212115145451946145452157Ratregion
5025976RH1304241855158417366158418004Ratregion
7205832D17S18359575156176205156177162Ratregion
7206178UniSTS:532426645149796058149796122Ratregion
5028737RH469011685150033858150034026Ratregion
5031386PMC15566P12665158429401158429667Ratregion
5034129RH1414722185150531029150531247Ratregion
5028799RH1423711775150418444150418621Ratregion
5028825RH1424731035144148694144148797Ratregion
5031564AU0479102365152075707152075941Ratregion
5026334RH1318081855155707073155707258Ratregion
5028973RH1430281305151051526151051656Ratregion
5034369D6S19372645147013854147014118Ratregion
5031898AU0467812215160403468160403687Ratregion
5034510BI2802471715146748655146748826Ratregion
5034584AW2520872075153730940153731147Ratregion
5034648BI2750712345151601823151602057Ratregion
5026740RH1333542035151905182151905385Ratregion
5026760RH1334252055160095082160095287Ratregion
5032084D4Mit541365150105801150105937Ratregion
5032113RH944421965148676290148676486Ratregion
5032145RH94538935148373871148373964Ratregion
5032153RH945691575146686949146687106Ratregion
5032155RH94576795148169892148169971Ratregion
5034732BI2762051815161095586161095767Ratregion
5034734BF3919161635159938551159938714Ratregion
5034782AA8925601005148102646148102746Ratregion
5026782RH1335072185150530658150530876Ratregion
5026866RH1338272205148373983148374203Ratregion
5026888RH1339152045149127433149127637Ratregion
5029401RH1446511935151055414151055607Ratregion
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5503954Klf45525155921461155922013Ratregion
5504604PMC312773P31205155479438155479558Ratregion
5505173Luzp13975148773696148774093Ratregion
5505384Epha27145153633275153633989Ratregion
5505444Id31205148369161148369281Ratregion
5505564UniSTS:4822669195160651881160652800Ratregion
5505582UniSTS:48497914105144791818144793228Ratregion
5505804UniSTS:49498116075145412289145413897Ratregion
5505863UniSTS:4959642085148149222148149430Ratregion
5506098UniSTS:4983635605149951635149952195Ratregion
5506376UniSTS:4790445425159052390159052932Ratregion
5506481D15S104514165144532144144533560Ratregion
5506401UniSTS:4791586595148098074148098733Ratregion
5506859G465972515154175936154176187Ratregion
5507063UniSTS:2243111625151319532151319694Ratregion
5507087UniSTS:2244781545149557684149557838Ratregion
5507317G481167935152956092152956885Ratregion
5499863UniSTS:2350652055147013942147014147Ratregion
5499637MARC_6181-6182:992006984:13925145909189145909581Ratregion
5501431Slc9a114195145626755145628174Ratregion
5502158MARC_7131-7132:996687522:105158986103158986565Ratregion
5502158MARC_7131-7132:996687522:105158986103158986808Ratregion
5502158MARC_7131-7132:996687522:105158986520158986565Ratregion
5500268D14S811E1085144381912144382021Ratregion
5499869UniSTS:235067875148372869148372956Ratregion
5499865UniSTS:2350932815158432491158432772Ratregion
5500647RH1364462155145755556145755771Ratregion
5500655RH1365152045149555169149555373Ratregion
5500867AFMB031WC98945148621824148622718Ratregion
5501363RH1590705160078730160079132Ratregion
5501085PMC133998P63575148372820148373292Ratregion
5501420Pax76455152094581152095226Ratregion
5501377D7S72810145143657277143658287Ratregion
5501542D19S60516115148135526148137137Ratregion
5501578RH41831795153418786153418865Ratregion
5501636UNH10205425148988625148989167Ratregion
5501764MARC_11851-11852:1029349291:14015145909955145910356Ratregion
5502152MARC_6491-6492:996689696:1775151604652151605323Ratregion
5502104MARC_4337-4338:996679555:105145810061145811119Ratregion
5502443RH1248701715147151141147151312Ratregion
5502587RH1254422615145758231145759722Ratregion
5502214GDB:6318024075148341700148342107Ratregion
5502491RH1250753675146353147146353514Ratregion
Position Markers

Flank 1: (D5Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25143,608,344 - 143,608,494 (+)MAPPER
mRatBN7.25143,608,201 - 143,608,494 (+)MAPPER
Rnor_6.05149,568,588 - 149,568,944NCBI
Rnor_6.05149,568,795 - 149,568,944NCBI
Rnor_5.05153,255,850 - 153,256,206UniSTS
Rnor_5.05153,256,057 - 153,256,206UniSTS
RGSC_v3.45150,236,111 - 150,236,260UniSTS
RGSC_v3.45150,236,110 - 150,236,260RGD
RGSC_v3.15150,246,149 - 150,246,299RGD
Celera5142,062,533 - 142,062,682UniSTS
Cytogenetic Map5 RGD
Flank 2: (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,165,494 - 161,165,651 (+)MAPPER
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.15167,854,767 - 167,854,925RGD
RH 3.4 Map51122.3RGD
RH 3.4 Map51122.3UniSTS
RH 2.0 Map51103.8RGD
Cytogenetic Map5 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
631498Bp100Blood pressure QTL 1004.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5158418175158429042Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: rats were injected with (2g/kg body wt) 20% glucose at 28, 30 and 32 wks of age and HDL-cholesterol and total cholesterol were analysed using an automatic analyser 619689
qtl_general number of animals used: 76(WOKW X DA)F2 and 74(DA X WOKW)F2 males 619689
qtl_general software used: MAPMAKER (EXP3.0b and QTL1.1b) 619689
qtl_statistics_details LOD=3.34 for HDL-cholesterol 619689