Epha10 (EPH receptor A10) - Rat Genome Database

Name: Epha10
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Epha10 (EPH receptor A10) Rattus norvegicus

Analyze

Symbol:

Epha10

Name:

EPH receptor A10

RGD ID:

1562679

Description:

Predicted to have transmembrane-ephrin receptor activity. Predicted to be involved in ephrin receptor signaling pathway and peptidyl-tyrosine phosphorylation. Orthologous to human EPHA10 (EPH receptor A10); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; acetamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

ephrin type-A receptor 10; LOC298528; RGD1562679; similar to Ephrin type-A receptor 10

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EPHA10 (EPH receptor A10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Epha10 (Eph receptor A10)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB
Chinchilla lanigera (long-tailed chinchilla):	Epha10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EPHA10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Epha10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EPHA10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	EPHA10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Epha10 (EPH receptor A10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EPHA7 (EPH receptor A7)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	EPHA10 (EPH receptor A10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Epha10 (Eph receptor A10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Eph	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	vab-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	137,139,588 - 137,175,637 (+)	NCBI
Rnor_6.0 Ensembl	5	142,875,773 - 142,908,395 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	142,875,171 - 142,910,537 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	146,645,808 - 146,680,199 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	144,228,301 - 144,248,902 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	5	135,661,767 - 135,694,928 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

cyclosporin A (ISO)

diazinon (ISO)

ethanol (ISO)

kojic acid (ISO)

methapyrilene (ISO)

methylphenidate (ISO)

pentanal (ISO)

potassium dichromate (ISO)

propanal (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

ephrin receptor signaling pathway (IEA)

multicellular organism development (IBA)

peptidyl-tyrosine phosphorylation (IEA)

positive regulation of kinase activity (IBA)

transmembrane receptor protein tyrosine kinase signaling pathway (IBA)

Cellular Component

integral component of plasma membrane (IBA)

neuron projection (IBA)

receptor complex (IBA)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

transmembrane receptor protein tyrosine kinase activity (IBA)

transmembrane-ephrin receptor activity (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15777695	PMID:23376485

Genomics

Comparative Map Data

Epha10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	137,139,588 - 137,175,637 (+)	NCBI
Rnor_6.0 Ensembl	5	142,875,773 - 142,908,395 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	142,875,171 - 142,910,537 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	146,645,808 - 146,680,199 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	144,228,301 - 144,248,902 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	5	135,661,767 - 135,694,928 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

EPHA10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	37,713,880 - 37,765,133 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	37,713,888 - 37,765,120 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	38,181,648 - 38,230,792 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	37,954,233 - 38,003,411 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	37,895,050 - 37,899,882	NCBI
Celera	1	36,459,675 - 36,508,664 (-)	NCBI
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	36,298,901 - 36,347,866 (-)	NCBI		HuRef
CHM1_1	1	38,297,768 - 38,346,680 (-)	NCBI		CHM1_1

Epha10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	124,775,408 - 124,811,594 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	124,774,692 - 124,811,593 (+)	Ensembl
GRCm38	4	124,881,530 - 124,917,801 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	124,880,899 - 124,917,800 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	124,559,029 - 124,563,752 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	124,384,128 - 124,388,812 (+)	NCBI			mm8
Celera	4	123,204,101 - 123,208,828 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI

Epha10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955452	15,510,054 - 15,547,769 (-)	NCBI	ChiLan1.0	ChiLan1.0

EPHA10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	38,335,783 - 38,375,186 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	38,337,871 - 38,386,946 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	36,987,683 - 37,038,611 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

Epha10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936474	19,916,666 - 19,935,958 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPHA10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	93,765,128 - 93,803,894 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	93,764,732 - 93,804,069 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

EPHA10
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	95,094,971 - 95,145,264 (+)	NCBI
ChlSab1.1 Ensembl	20	95,098,283 - 95,142,863 (+)	Ensembl

Epha10
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	20,441,465 - 20,480,421 (-)	NCBI

Position Markers

34.MMHAP10FRD10.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	142,875,827 - 142,875,934	NCBI	Rnor6.0
Rnor_5.0	5	146,646,447 - 146,646,554	UniSTS	Rnor5.0
Celera	5	135,661,911 - 135,662,018	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH137663

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	142,879,376 - 142,879,537	NCBI	Rnor6.0
Rnor_5.0	5	146,649,996 - 146,650,157	UniSTS	Rnor5.0
Celera	5	135,665,448 - 135,665,609	UniSTS
RH 3.4 Map	5	890.7	UniSTS
Cytogenetic Map	5	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	71552569	157225114	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	84963058	173504662	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	97921932	149030144	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	100723739	153577831	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	102945579	154732228	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	107119214	152119214	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111278451	156278451	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112279412	157279412	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112279412	157279412	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112279412	157279412	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112279412	157279412	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112279412	157279412	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114140832	159140832	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114140832	159140832	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116767924	161767924	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116767924	161767924	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116767924	161767924	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116767924	161767924	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125455818	149568944	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125455818	157225114	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	128687766	173687766	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130531300	145726262	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	131077716	173707219	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132551937	173707219	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133943857	173707219	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133943857	173707219	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	134197905	173707219	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134502121	149030144	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134502140	157212422	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	134712342	173707219	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	134712342	173707219	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	136354114	173707219	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136640731	173707219	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138154677	172402610	Rat
7411722	Strs6	Sensitivity to stroke QTL 6	3.9		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	5	140387005	143846157	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	142307322	173707219	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	142309061	173707219	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	86
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000056496, ENSRNOT00000075431
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	appendage
High
Medium								21	1
Low								49	8
Below cutoff	2	7	1	10	1	3	3	4	20	1	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000056496 ⟹ ENSRNOP00000053334

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	142,875,773 - 142,908,395 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082120 ⟹ ENSRNOP00000068718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	142,875,773 - 142,880,212 (+)	Ensembl

RefSeq Acc Id:

NM_001135709 ⟹ NP_001129181

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,140,657 - 137,174,157 (+)	NCBI
Rnor_6.0	5	142,875,683 - 142,909,057 (+)	NCBI
Rnor_5.0	5	146,645,808 - 146,680,199 (+)	NCBI
RGSC_v3.4	5	144,228,301 - 144,248,902 (+)	RGD
Celera	5	135,661,767 - 135,694,928 (+)	RGD

Sequence:

show sequence

AGCCGGCGCTGGGGTCTGGGGGCACTGCTCAGCGGTGCTGGGCTGGCGAGGCTGGAGCCGCCGC
CGCACTGACAGCTCCGTCTGTGGACCATGGAGACTGGCGCCGGTCCACACCCGCTGCGCCTGTT
CGTCTGCCTGATGCCACTCTGTCTTGCTCTGCTTCTGGGACCCGGGCGGCCTGGGACCGCCGAG
GAAGTTACCCTCCTGGACTCCAAAGCCTCTCAGGCTGAGCTGGGCTGGACTGCACTGCCAAGCA
CTGGGTGGGAGGAGATTAGTGGCGTGGATGAACATGATCGTCCCATCCGCACGTACCAAGTGTG
CAACGTGTTGGAGCCCAACCAGGACAACTGGCTTCAGACTGGCTGGATCAGCCGTGGCCGTGGG
CAGCGCATCTTCGTGGAGCTGCAGTTCACGCTGCGTGACTGCAGCAGCATACCTGGAGCCACTG
GCACCTGCAAAGAGACCTTCAACGCATACTACCTGGAAACCGAGGCCGACTTAGGCCGAGGACA
TCCCCACCTAGGAGGCAACCGACCCCGCAAGATTGACACCATCGCAGCTGATGAGAGCTTCACG
CAGGGCGACTTGGGGGAGCGAAAGATGAAGCTGAACACAGAGGTGCGTGAGATTGGCCCCCTCA
GCCGTCAAGGCTTCCACCTGGCCTTCCAGGACGTGGGTGCATGCGTGGCGTTGGTCTCAGTGCG
TGTCTACTACAAGCAGTGCCGTGCCACAGTGCGAGGCTTGGCAGCCTTCCCCGCCACCGCAGCT
GAGAGCGCCTTCTCCACGCTGGTGGAAGTGGCTGGAACGTGCGTGGCCCACTCGGAAGGGGAGC
CCAGCAGCCCTCCACGCATGCACTGTGGCGCGGATGGCGAGTGGCTGGTGCCTGTGGGCCGTTG
CAGCTGCAGTGCAGGATTCCAGGAACGTGGTGACATCTGCGAAGCCTGTCCCCCAGGTTTTTAC
AAGGTGTCCCCAAGGCGGCCCCTCTGCTCACCCTGCCCGGAGCACAGCTTGGCCCTGGAGAATG
CCTCTACATTCTGTGTGTGCCAGGACACCTATGCTCGCTCGCCCACCGACCCGCCCTCAGCTTC
CTGCACTCGGCCGCCGTCCGCGCCGCGGGACCTGCAGTACAGCCTGAGCCGTTCCCCGCTGGCG
CTGCGGCTGCGCTGGCTGCCGCCTGAGGACTCCGGTGGCCGCTCCGACGTCACCTACTCGCTGC
TGTGCCTGCGCTGCGGGCGCGACGGTCCGGCGGGCGCGTGCCAACCCTGCGGGCCGCGCGTGGC
CTTCGTCCCGCGCCAGGCTGGGCTACGGGAACGCGCCGCCACGCTACTGCACCTGCGGCCGGGC
GCGCGCTACACCGTGCGCGTGGCCGCGCTCAACGGCGTCTCGGGCCCGGCGGCTGCCGCGGGAG
CCACTTATGCGCAGGTCACCGTGTCCACCGGACCCGGGGCACCCTGGGAGGAGGATGAAATCCG
TAGGGACCGCGTGGAGCCCCAGAGCGTGTCGCTGTCGTGGAGAGAGCCTGTCCCTGCTGGAGCT
TCCGGAACCAACAGGACTGAGTATGAGATCCGCTACTACGAGAAGGGTTTGGGGGACAGGTTCC
AGTCTTGGGTTCACCTGGGTTCACCCTTGGCTACACAAGTCGGAGGTCAGCCCAGGCTACGTGA
TTCTCCATTTCAAAACCGAAACCAAAACCTCACAAAATCCTGGGAAACCAACCCCAGCTACCTG
GACTCTTGCCTCCTCCCAGAGCTGGGCTGCATTGCCCCTGGGTCCAGAGACCAGAGCCCAGCAG
TGGTTGTCACTGTGGTGACCATCTCAGCCCTCTTGGTCCTGGGCTCCGTGATGAGTGTACTGGC
CATCTGGAGGAGGCCCTGTGATGGCAAAGGAAGTGGCAACGCCCATGATGAAGAGGAACTGTAT
TTCCACTTCAAAGTTCCGACACGCCGCACGTTTCTGGACCCCCAAAGCTGCGGGGACCCGTTGC
AGGCTGTGCATTTGTTTGCCAAAGAGCTAGATGCCAAAAGCGTCACCCTGGAGAAGAGCTTGGG
AGCAGGCCGATTTGGGGACCTGTGCTGCGGCTGCCTGCAGCTGCCGGGTCGCCAGGAACTACCC
GTGGCCGTGCACACTCTGAGGGAGGGTTGCTCAGACTCCCAGAAGCTCAGCTTCCTGGCTGAGG
CCCTCACCCTGGGACAGTTTGACCACAGCCACATCGTGCGGCTGGAAGGCGTGGTCACCCGAGG
GAACCCCTTGATGATTGTCACCGAGTACATGAACCTCGGGGCCCTAGATGACTTCCTCAGGCAT
CACGAGGCAGAGCTGGTGACTGCGCAGCTGATGGGTCTGCTGCCCGGGCTGGCATCGGCCATGA
AGTATCTGTCGGAAATGGGCTATGTCCACCGGGGCCTCGCGGCCCGCCGAGTGCTCCTCAGCAG
TGGCCTCATCTGTAAGATCTCTGGCTTTGGGCGGGGTCCCCGGGACCGAGCGGAAGCTGTCTAC
ACCACCATGAGTGGCAGGAGCCCAGCGCTCTGGGCAGCTCCTGAGACTCTACAGTTTGGCCACT
TCAGCTCTGCCAGTGACGTGTGGAGCTTTGGCATTGTCATGTGGGAAGTGATGGCCTTTGGGGA
GCGGCCCTACTGGGACATGTCTGGACAAGATGTAATCAAGGCCGTGGAGGATGGTTTCCGGCTG
CCACCCCCCAGAAACTGTCCCTCCCAGCTGCACCGATTGATGCTTGAGTGCTGGCAGAAAGACC
CAGGTGAGCGGCCCAGGTTCTCCCAGATCCACAGCATCCTGAGCAAGATGGGGCAGGAGCCAGA
ACCCTCCAAGTGTGCCTCGACCACCTGTCTCAGGCCTCCCACCCCACTGGCAGACCGTGCCTTT
TCTGCCTTCCCCTCCTTTGGCTCCGTGGGTGCCTGGCTGGAGGCCCTAGACTTGTGTCGCTACA
AGGACAACTTCTCTGCAGCCGGCTATGGGAGCCTGGAGGCCGTGACAGAGATGACTGCCCAGGA
CCTGGGGAGCCTTGGGATCTCTTCTGCGGAGCATCGAGAGGCCCTCCTTAGTGGGATCAGTGCC
CTGCAGACTCGAGTGCTACAACTACAGGGTCAGGGGGTGCAAGTGTGAGCCGCTCAGCCCTGCC
CCAGGACCTACAAGCGACACTCCCCTAGGGTGGGAGGAGTGCTTATTCTCAGTGGCCTCTGAGC
TGGTTGGTACCACGTTGTCCCCCCATTTCATTTTTCCTCTCAACACCTTGCTGACCTAGTGGTC
CTAAAACGAGGTTCAGATCCCTGGAGAGGGCCCCAGACATAACAGTAGGAAGAGGGCTAGGGTG
TCAAGGGAAGGTTGGGGTGTCAAGGGTGTTGGTTGGGGAAGACAGTTTCAGTTGTCCTGGCTCA
GGCCCCTTAGACTCCCACACTCAGTGGGGGTTGGGCCTAATCAGTGGGCATCTCATTTCTCCAG
AGAGCTTTTGACTTGGGCAATATGGGTCCCTGTGAGAGACCCATTGTTTCTGACAGGGACCATA
GCTGCGTAGGCACCAGAGTATGGGAGCCTGAGCCAGTGGGTGGTGCCCCTTACATCCTGTGCCT
TGGCTAGGTCTATCTGCACACTGGTGACAAGGCCCTAGCAGGCAAGTGGTGCTGAGCTCAGGGA
CTGGGCCTCCAGGTGGAGACTCCAGAGCTGATGGCTTCCTGCCTTGGGGTTGGCAGTTCAGGAT
GAGGGCCAGGCTCCTAGTAGGTCATGCAAAGTCCTGGTGCTCGCCCTGGGCCGATGTCTGATTT
GATTGG

hide sequence

RefSeq Acc Id:

XM_006238858 ⟹ XP_006238920

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,629 - 137,175,637 (+)	NCBI
Rnor_6.0	5	142,875,188 - 142,910,537 (+)	NCBI
Rnor_5.0	5	146,645,808 - 146,680,199 (+)	NCBI

Sequence:

show sequence

GGAGGGATCGAACCATGCAACACTGGGAGCCGCAGACACAGGAAGAGGCCAAGGGCTGGGAGAC
ACCAGAACTCCCTAGAGCTTGAGGTCAGGATATCAAGCTCGGAAACCCCCTGCAAGTAATGGGA
ACAAGGGTGCTCCCAAGGCTAGCTAAGAGGCTGCAAGTGTCACCGCTTCCCCGCGGACCGCCCC
CCCGTAAGCCACGCCCACAGCGCCTACTTCTCAGGATTCAGAGAGCTAAGGTTTAAGGGTCTCT
AGTCCACCGACGCCAGCTTGTCTCGCTCTCCGGCAACCCTGCTAACGCTCAGAGCCGCCCTACC
CCCACGGTTTGGAGATCTGCGGGACCCCTTGGTTTCCCCCTCCAGCTCGGCGTTCCGCCCCTGG
CCTATGAAACTCCACCTTCTCATCCTCTGCTGACCCGGATTGGTGGACCTCCCGCGGCGATGCG
TAGCGATTGGTCCCCATGGATGATGGTGACCAGCGAGACTCCGCCCCAGCCGGCGCTGGGGTCT
GGGGGCACTGCTCAGCGGTGCTGGGCTGGCGAGGCTGGAGCCGCCGCCGCACTGACAGCTCCGT
CTGTGGACCATGGAGACTGGCGCCGGTCCACACCCGCTGCGCCTGTTCGTCTGCCTGATGCCAC
TCTGTCTTGCTCTGCTTCTGGGACCCGGGCGGCCTGGGACCGCCGAGGAAGTTACCCTCCTGGA
CTCCAAAGCCTCTCAGGCTGAGCTGGGCTGGACTGCACTGCCAAGCACTGGGTGGGAGGAGATT
AGTGGCGTGGATGAACATGATCGTCCCATCCGCACGTACCAAGTGTGCAACGTGTTGGAGCCCA
ACCAGGACAACTGGCTTCAGACTGGCTGGATCAGCCGTGGCCGTGGGCAGCGCATCTTCGTGGA
GCTGCAGTTCACGCTGCGTGACTGCAGCAGCATACCTGGCGCCACTGGCACCTGCAAAGAGACC
TTCAACGCATACTACCTGGAAACCGAGGCCGACTTAGGCCGAGGACATCCCCACCTAGGAGGCA
ACCGACCCCGCAAGATTGACACCATCGCAGCTGATGAGAGCTTCACGCAGGGCGACTTGGGGGA
GCGAAAGATGAAGCTGAACACAGAGGTGCGTGAGATTGGCCCCCTCAGCCGTCAAGGCTTCCAC
CTGGCCTTCCAGGACGTGGGTGCATGCGTGGCGTTGGTCTCAGTGCGTGTCTACTACAAGCAGT
GCCGTGCCACAGTGCGAGGCTTGGCAGCCTTCCCCGCCACCGCAGCTGAGAGCGCCTTCTCCAC
GCTGGTGGAAGTGGCTGGAACGTGCGTGGCCCACTCGGAAGGGGAGCCCAGCAGCCCTCCACGC
ATGCACTGTGGCGCGGATGGCGAGTGGCTGGTGCCTGTGGGCCGTTGCAGCTGCAGTGCAGGAT
TCCAGGAACGTGGTGACATCTGCGAAGCCTGTCCCCCAGGTTTTTACAAGGTGTCCCCAAGGCG
GCCCCTCTGCTCACCCTGCCCGGAGCACAGCTTGGCCCTGGAGAATGCCTCTACATTCTGTGTG
TGCCAGGACACCTATGCTCGCTCGCCCACCGACCCGCCCTCAGCTTCCTGCACTCGGCCGCCGT
CCGCGCCGCGGGACCTGCAGTACAGCCTGAGCCGTTCCCCGCTGGCGCTGCGGCTGCGCTGGCT
GCCGCCTGAGGACTCCGGTGGCCGCTCCGACGTCACCTACTCGCTGCTGTGCCTGCGCTGCGGG
CGCGACGGTCCGGCGGGCGCGTGCCAACCCTGCGGGCCGCGCGTGGCCTTCGTCCCGCGCCAGG
CTGGGCTACGGGAACGCGCCGCCACGCTACTGCACCTGCGGCCGGGCGCGCGCTACACCGTGCG
CGTGGCCGCGCTCAACGGCGTCTCGGGCCCGGCGGCTGCCGCGGGAGCCACTTATGCGCAGGTC
ACCGTGTCCACCGGACCCGGGGCACCCTGGGAGGAGGATGAAATCCGTAGGGACCGCGTGGAGC
CCCAGAGCGTGTCGCTGTCGTGGAGAGAGCCTGTCCCTGCTGGAGCTTCCGGAACCAACAGGAC
TGAGTATGAGATCCGCTACTACGAGAAGGGTCAGAGTGAGCAGACTTACTCCACAGTGAAGACT
GGGGCACCGGCTGTCACTGTCACCAACCTGAAGCCAGCTACCAGATACGTTTTTCAGATCCGGG
CAGCCTCCCCAGGGCCTTCCTGGGAGGCCCAGAGCTTCAGTCCAAGCATCGAAGTGCAGACCCC
AGGGGAAGTTGCCCCTGGGTCCAGAGACCAGAGCCCAGCAGTGGTTGTCACTGTGGTGACCATC
TCAGCCCTCTTGGTCCTGGGCTCCGTGATGAGTGTACTGGCCATCTGGAGGAGGCCCTGTGATG
GCAAAGGAAGTGGCAACGCCCATGATGAAGAGGAACTGTATTTCCACTTCAAAGTTCCGACACG
CCGCACGTTTCTGGACCCCCAAAGCTGCGGGGACCCGTTGCAGGCTGTGCATTTGTTTGCCAAA
GAGCTAGATGCCAAAAGCGTCACCCTGGAGAAGAGCTTGGGAGCAGGCCGATTTGGGGACCTGT
GCTGCGGCTGCCTGCAGCTGCCGGGTCGCCAGGAACTACCCGTGGCCGTGCACACTCTGAGGGA
GGGTTGCTCAGACTCCCAGAAGCTCAGCTTCCTGGCTGAGGCCCTCACCCTGGGACAGTTTGAC
CACAGCCACATCGTGCGGCTGGAAGGCGTGGTCACCCGAGGGAACCCCTTGATGATTGTCACCG
AGTACATGAACCTCGGGGCCCTAGATGACTTCCTCAGGCATCACGAGGCAGAGCTGGTGACTGC
GCAGCTGATGGGTCTGCTGCCCGGGCTGGCATCGGCCATGAAGTATCTGTCGGAAATGGGCTAT
GTCCACCGGGGCCTCGCGGCCCGCCGAGTGCTCCTCAGCAGTGGCCTCATCTGTAAGATCTCTG
GCTTTGGGCGGGGTCCCCGGGACCGAGCGGAAGCTGTCTACACCACCATGAGTGGCAGGAGCCC
AGCGCTCTGGGCAGCTCCTGAGACTCTACAGTTTGGCCACTTCAGCTCTGCCAGTGACGTGTGG
AGCTTTGGCATTGTCATGTGGGAAGTGATGGCCTTTGGGGAGCGGCCCTACTGGGACATGTCTG
GACAAGATGTAATCAAGGCCGTGGAGGATGGTTTCCGGCTGCCACCCCCCAGAAACTGTCCCTC
CCAGCTGCACCGATTGATGCTTGAGTGCTGGCAGAAAGACCCAGGTGAGCGGCCCAGGTTCTCC
CAGATCCACAGCATCCTGAGCAAGATGGGGCAGGAGCCAGAACCCTCCAAGTGTGCCTCGACCA
CCTGTCTCAGGCCTCCCACCCCACTGGCAGACCGTGCCTTTTCTGCCTTCCCCTCCTTTGGCTC
CGTGGGTGCCTGGCTGGAGGCCCTAGACTTGTGTCGCTACAAGGACAACTTCTCTGCAGCCGGC
TATGGGAGCCTGGAGGCCGTGACAGAGATGACTGCCCAGGACCTGGGGAGCCTTGGGATCTCTT
CTGCGGAGCATCGAGAGGCCCTCCTTAGTGGGATCAGTGCCCTGCAGACTCGAGTGCTACAACT
ACAGGGTCAGGGGGTGCAAGTGTGAGCCGCTCAGCCCTGCCCCAGGACCTACAAGCGACACTCC
CCTAGGGTGGGAGGAGTGCTTATTCTCAGTGGCCTCTGAGCTGGTTGGTACCACGTTGTCCCCC
CATTTCATTTTTCCTCTCAACACCTTGCTGACCTAGTGGTCCTAAAACGAGGTTCAGATCCCTG
GAGAGGGCCCCAGACATAACAGTAGGAAGAGGGCTAGGGTGTCAAGGGAAGGTTGGGGTGTCAA
GGGTGTTGGTTGGGGAAGACAGTTTCAGTTGTCCTGGCTCAGGCCCCTTAGACTCCCACACTCA
GTGGGGGTTGGGCCTAATCAGTGGGCATCTCATTTCTCCAGAGAGCTTTTGACTTGGGCAATAT
GGGTCCCTGTGAGAGACCCATTGTTTCTGACAGGGACCATAGCTGCGTAGGCACCAGAGTATGG
GAGCCTGAGCCAGTGGGTGGTGCCCCTTACATCCTGTGCCTTGGCTAGGTCTATCTGCACACTG
GTGACAAGGCCCTAGCAGGCAAGTGGTGCTGAGCTCAGGGACTGGGCCTCCAGGTGGAGACTCC
AGAGCTGATGGCTTCCTGCCTTGGGGTTGGCAGTTCAGGATGAGGGCCAGGCTCCTAGTAGGTC
ATGCAAAGTCCTGGTGCTCGCCCTGGGCCGATGTCTGATTTGATTGGAAGTGATTTCAGAAGAG
CACAGCGGGCTTACTCTGCATTCTGGAGGGTGGAAAGGAGAATGAGACTGAGGGAGTGGATAGG
CTGGTCCAATCACACTATATACTTGGGGAAGTCAGAGCCCGTATAGTCTCAGAGCCAGGGTTAA
TGCCAGACCGAAATCCAGGGAGAAGTCTGGCCCTCAAGAGAGCTTGCCCTGCCCCATGGCACCA
GCATTCCTCCCTGGGCGGCACAGTGAATGGTCCCTGGGTTGAACCCCTTCAGGCCGCTCTGTCC
CTCAACACTAGAGTACAGTTCCCCTCCAGAGTGCCTCCCTGTGTGCTGTTCAGAGCTCTTGAAG
GTGCTAAGCAAGGACCCTGGCAGCTGTTGAGACCTTGAGACCAAAGCCATCCCAGAGGGCAGAA
AGGCATGGATGTGTACAGGACCTGGGGCTGTTTGTCTACATGACCCCTGATGGATGCCTGTTTG
CTATGGTAGGGAGGAAGGGTGGCATAGGCTTGAGACAGAGTAGGTGGGAGTGGAGAGGAGTAGG
CAGGATACAGAGAGTACCTCTGGAGGGAGCACACTAGGAGGGGATCCCCTGGGGCACAGGGGAA
ATGGGCAGGTGGACTGTGGATTATGTTTGTGTAGTGGGGGGTGTCCAAAAAGGCTTCTTAAATG
AAGTCAAAATTGAGTAAGGCCTTGATGGGCAGGGTATTGTCTCCTTGGGGTGAATGGAGTCATC
AGCAGGCTTGGAATCCAAGTAAGGATGACTAACAGAAAGCCTGAGGGAGGGGGCTGGAAACCAC
GATTCGACTTTGGGGACTCCCAGCAGTGCCTTTGGCCTTGACCTGCCAGCAGCAGCTCTTTCTT
CCTCAGACCCTACCCCATTTCCAACTCTACTCCCTGGGCACTTGACTGAGCTCAGTGACTGCAG
GAATACTGGGGTAGACTGGGATACTGCTCCCTTTGACAGAACTGGGGGAATTGAAACATCCCCA
CACGATCTCCCTTCATCCTCCCTCCAGGGAAAACTGGCTCAACGTCCAAGGCTCTTGGGCACCA
GTAGTGCCCTGTTTTGGGTTATCAGAACCTCATCCCCATCTCCAGCTACATCAGTCATTAAGGT
CAAACTCCTCCCCTCCCCAGCTGTTTGCAGAGGGGTCCCTGGCTGTGCTGGCAGGACTTCGGTG
TCCAGGGTAGACCTCCCCTCTGATGAGGAGGTCCTAGAATCCCGAGGGGTCCCAGGCCTCAGCC
CTGCACAGGCACCAGCATGATACAGGGTGCTGGGCCACTGGGGACCCTCCACAGATTTATTTTT
ATATACAGAGCTTGTTCATTGGACAGAGGGAGGTCACCTGCAACCCATATTGCTGTCACCCACC
CAGGGAGGGAGGGAGGGACTGGTTGTGGGTAGAGGCTCCTTTGCGAAACTCTGGAGATGTGTTT
ATATTTCTGGGTTCTATATGCAGTACCAAGTAATAAACACTTGTGTGTTATGGTC

hide sequence

RefSeq Acc Id:

XM_017593293 ⟹ XP_017448782

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,588 - 137,159,303 (+)	NCBI
Rnor_6.0	5	142,875,171 - 142,894,220 (+)	NCBI

Sequence:

show sequence

GGGCGGGAGGAAAAGGAGGAGGGATCGAACCATGCAACACTGGGAGCCGCAGACACAGGAAGAG
GCCAAGGGCTGGGAGACACCAGAACTCCCTAGAGCTTGAGGTCAGGATATCAAGCTCGGAAACC
CCCTGCAAGTAATGGGAACAAGGGTGCTCCCAAGGCTAGCTAAGAGGCTGCAAGTGTCACCGCT
TCCCCGCGGACCGCCCCCCCGTAAGCCACGCCCACAGCGCCTACTTCTCAGGATTCAGAGAGCT
AAGGTTTAAGGGTCTCTAGTCCACCGACGCCAGCTTGTCTCGCTCTCCGGCAACCCTGCTAACG
CTCAGAGCCGCCCTACCCCCACGGTTTGGAGATCTGCGGGACCCCTTGGTTTCCCCCTCCAGCT
CGGCGTTCCGCCCCTGGCCTATGAAACTCCACCTTCTCATCCTCTGCTGACCCGGATTGGTGGA
CCTCCCGCGGCGATGCGTAGCGATTGGTCCCCATGGATGATGGTGACCAGCGAGACTCCGCCCC
AGCCGGCGCTGGGGTCTGGGGGCACTGCTCAGCGGTGCTGGGCTGGCGAGGCTGGAGCCGCCGC
CGCACTGACAGCTCCGTCTGTGGACCATGGAGACTGGCGCCGGTCCACACCCGCTGCGCCTGTT
CGTCTGCCTGATGCCACTCTGTCTTGCTCTGCTTCTGGGACCCGGGCGGCCTGGGACCGCCGAG
GAAGTTACCCTCCTGGACTCCAAAGCCTCTCAGGCTGAGCTGGGCTGGACTGCACTGCCAAGCA
CTGGGTGGGAGGAGATTAGTGGCGTGGATGAACATGATCGTCCCATCCGCACGTACCAAGTGTG
CAACGTGTTGGAGCCCAACCAGGACAACTGGCTTCAGACTGGCTGGATCAGCCGTGGCCGTGGG
CAGCGCATCTTCGTGGAGCTGCAGTTCACGCTGCGTGACTGCAGCAGCATACCTGGCGCCACTG
GCACCTGCAAAGAGACCTTCAACGCATACTACCTGGAAACCGAGGCCGACTTAGGCCGAGGACA
TCCCCACCTAGGAGGCAACCGACCCCGCAAGATTGACACCATCGCAGCTGATGAGAGCTTCACG
CAGGGCGACTTGGGGGAGCGAAAGATGAAGCTGAACACAGAGGTGCGTGAGATTGGCCCCCTCA
GCCGTCAAGGCTTCCACCTGGCCTTCCAGGACGTGGGTGCATGCGTGGCGTTGGTCTCAGTGCG
TGTCTACTACAAGCAGTGCCGTGCCACAGTGCGAGGCTTGGCAGCCTTCCCCGCCACCGCAGCT
GAGAGCGCCTTCTCCACGCTGGTGGAAGTGGCTGGAACGTGCGTGGCCCACTCGGAAGGGGAGC
CCAGCAGCCCTCCACGCATGCACTGTGGCGCGGATGGCGAGTGGCTGGTGCCTGTGGGCCGTTG
CAGCTGCAGTGCAGGATTCCAGGAACGTGGTGACATCTGCGAAGCCTGTCCCCCAGGTTTTTAC
AAGGTGTCCCCAAGGCGGCCCCTCTGCTCACCCTGCCCGGAGCACAGCTTGGCCCTGGAGAATG
CCTCTACATTCTGTGTGTGCCAGGACACCTATGCTCGCTCGCCCACCGACCCGCCCTCAGCTTC
CTGCACTCGGCCGCCGTCCGCGCCGCGGGACCTGCAGTACAGCCTGAGCCGTTCCCCGCTGGCG
CTGCGGCTGCGCTGGCTGCCGCCTGAGGACTCCGGTGGCCGCTCCGACGTCACCTACTCGCTGC
TGTGCCTGCGCTGCGGGCGCGACGGTCCGGCGGGCGCGTGCCAACCCTGCGGGCCGCGCGTGGC
CTTCGTCCCGCGCCAGGCTGGGCTACGGGAACGCGCCGCCACGCTACTGCACCTGCGGCCGGGC
GCGCGCTACACCGTGCGCGTGGCCGCGCTCAACGGCGTCTCGGGCCCGGCGGCTGCCGCGGGAG
CCACTTATGCGCAGGTCACCGTGTCCACCGGACCCGGGGCCATTCCACCGTGAACAAGCCAATC
TGGGCTACACACTCTCTTAGGTCTTCAAACCACAGAATGAGACTGAAGGATGAGAAACAAGCAG
GACGAGGTAAACTGGGAAGGCAAGGGAGGCTTTCCCTCCCAGTAGGCAATGAAAGTGAGAGAAG
CCTGGGCCAGATATTCTCCCTAAGCCTCTGGTCCCACCAAGACTCTGAATCCTCAAGCCCCACA
GGCCACGCCCACATCTAACCCCTGATCCCCCTATGCA

hide sequence

RefSeq Acc Id:

XM_039109629 ⟹ XP_038965557

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,625 - 137,175,637 (+)	NCBI

RefSeq Acc Id:

XM_039109630 ⟹ XP_038965558

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,597 - 137,170,957 (+)	NCBI

RefSeq Acc Id:

XR_005504407

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,604 - 137,171,779 (+)	NCBI

RefSeq Acc Id:

XR_005504408

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	137,139,589 - 137,159,529 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129181	(Get FASTA)	NCBI Sequence Viewer
	XP_006238920	(Get FASTA)	NCBI Sequence Viewer
	XP_017448782	(Get FASTA)	NCBI Sequence Viewer
	XP_038965557	(Get FASTA)	NCBI Sequence Viewer
	XP_038965558	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80410	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001129181 ⟸ NM_001135709

- Peptide Label:

precursor

- Sequence:

show sequence

METGAGPHPLRLFVCLMPLCLALLLGPGRPGTAEEVTLLDSKASQAELGWTALPSTGWEEISGV
DEHDRPIRTYQVCNVLEPNQDNWLQTGWISRGRGQRIFVELQFTLRDCSSIPGATGTCKETFNA
YYLETEADLGRGHPHLGGNRPRKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSRQGFHLAF
QDVGACVALVSVRVYYKQCRATVRGLAAFPATAAESAFSTLVEVAGTCVAHSEGEPSSPPRMHC
GADGEWLVPVGRCSCSAGFQERGDICEACPPGFYKVSPRRPLCSPCPEHSLALENASTFCVCQD
TYARSPTDPPSASCTRPPSAPRDLQYSLSRSPLALRLRWLPPEDSGGRSDVTYSLLCLRCGRDG
PAGACQPCGPRVAFVPRQAGLRERAATLLHLRPGARYTVRVAALNGVSGPAAAAGATYAQVTVS
TGPGAPWEEDEIRRDRVEPQSVSLSWREPVPAGASGTNRTEYEIRYYEKGLGDRFQSWVHLGSP
LATQVGGQPRLRDSPFQNRNQNLTKSWETNPSYLDSCLLPELGCIAPGSRDQSPAVVVTVVTIS
ALLVLGSVMSVLAIWRRPCDGKGSGNAHDEEELYFHFKVPTRRTFLDPQSCGDPLQAVHLFAKE
LDAKSVTLEKSLGAGRFGDLCCGCLQLPGRQELPVAVHTLREGCSDSQKLSFLAEALTLGQFDH
SHIVRLEGVVTRGNPLMIVTEYMNLGALDDFLRHHEAELVTAQLMGLLPGLASAMKYLSEMGYV
HRGLAARRVLLSSGLICKISGFGRGPRDRAEAVYTTMSGRSPALWAAPETLQFGHFSSASDVWS
FGIVMWEVMAFGERPYWDMSGQDVIKAVEDGFRLPPPRNCPSQLHRLMLECWQKDPGERPRFSQ
IHSILSKMGQEPEPSKCASTTCLRPPTPLADRAFSAFPSFGSVGAWLEALDLCRYKDNFSAAGY
GSLEAVTEMTAQDLGSLGISSAEHREALLSGISALQTRVLQLQGQGVQV

hide sequence

RefSeq Acc Id:	XP_006238920 ⟸ XM_006238858
- Peptide Label:	isoform X2
- UniProtKB:	F1LX55 (UniProtKB/TrEMBL)
- Sequence:	show sequence METGAGPHPLRLFVCLMPLCLALLLGPGRPGTAEEVTLLDSKASQAELGWTALPSTGWEEISGV DEHDRPIRTYQVCNVLEPNQDNWLQTGWISRGRGQRIFVELQFTLRDCSSIPGATGTCKETFNA YYLETEADLGRGHPHLGGNRPRKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSRQGFHLAF QDVGACVALVSVRVYYKQCRATVRGLAAFPATAAESAFSTLVEVAGTCVAHSEGEPSSPPRMHC GADGEWLVPVGRCSCSAGFQERGDICEACPPGFYKVSPRRPLCSPCPEHSLALENASTFCVCQD TYARSPTDPPSASCTRPPSAPRDLQYSLSRSPLALRLRWLPPEDSGGRSDVTYSLLCLRCGRDG PAGACQPCGPRVAFVPRQAGLRERAATLLHLRPGARYTVRVAALNGVSGPAAAAGATYAQVTVS TGPGAPWEEDEIRRDRVEPQSVSLSWREPVPAGASGTNRTEYEIRYYEKGQSEQTYSTVKTGAP AVTVTNLKPATRYVFQIRAASPGPSWEAQSFSPSIEVQTPGEVAPGSRDQSPAVVVTVVTISAL LVLGSVMSVLAIWRRPCDGKGSGNAHDEEELYFHFKVPTRRTFLDPQSCGDPLQAVHLFAKELD AKSVTLEKSLGAGRFGDLCCGCLQLPGRQELPVAVHTLREGCSDSQKLSFLAEALTLGQFDHSH IVRLEGVVTRGNPLMIVTEYMNLGALDDFLRHHEAELVTAQLMGLLPGLASAMKYLSEMGYVHR GLAARRVLLSSGLICKISGFGRGPRDRAEAVYTTMSGRSPALWAAPETLQFGHFSSASDVWSFG IVMWEVMAFGERPYWDMSGQDVIKAVEDGFRLPPPRNCPSQLHRLMLECWQKDPGERPRFSQIH SILSKMGQEPEPSKCASTTCLRPPTPLADRAFSAFPSFGSVGAWLEALDLCRYKDNFSAAGYGS LEAVTEMTAQDLGSLGISSAEHREALLSGISALQTRVLQLQGQGVQV hide sequence

RefSeq Acc Id:

XP_017448782 ⟸ XM_017593293

- Peptide Label:

isoform X4

- Sequence:

show sequence

METGAGPHPLRLFVCLMPLCLALLLGPGRPGTAEEVTLLDSKASQAELGWTALPSTGWEEISGV
DEHDRPIRTYQVCNVLEPNQDNWLQTGWISRGRGQRIFVELQFTLRDCSSIPGATGTCKETFNA
YYLETEADLGRGHPHLGGNRPRKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSRQGFHLAF
QDVGACVALVSVRVYYKQCRATVRGLAAFPATAAESAFSTLVEVAGTCVAHSEGEPSSPPRMHC
GADGEWLVPVGRCSCSAGFQERGDICEACPPGFYKVSPRRPLCSPCPEHSLALENASTFCVCQD
TYARSPTDPPSASCTRPPSAPRDLQYSLSRSPLALRLRWLPPEDSGGRSDVTYSLLCLRCGRDG
PAGACQPCGPRVAFVPRQAGLRERAATLLHLRPGARYTVRVAALNGVSGPAAAAGATYAQVTVS
TGPGAIPP

hide sequence

RefSeq Acc Id:

ENSRNOP00000068718 ⟸ ENSRNOT00000082120

RefSeq Acc Id:

ENSRNOP00000053334 ⟸ ENSRNOT00000056496

RefSeq Acc Id:	XP_038965558 ⟸ XM_039109630
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965557 ⟸ XM_039109629
- Peptide Label:	isoform X1

Protein Domains

Eph LBD Fibronectin type-III Protein kinase SAM

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	146650746	146650747	T	G	snv	ACI/EurMcwi (MCW), FHH/EurMcwi (MCW)
5	146676742	146676743	A	G	snv	SR/JrHsd (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562679	AgrOrtholog
Ensembl Genes	ENSRNOG00000037340	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000053334	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068718	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056496	UniProtKB/TrEMBL
	ENSRNOT00000082120	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
	2.60.120.260	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
InterPro	Eph_TM	UniProtKB/TrEMBL
	Ephrin_rcpt_lig-bd_dom	UniProtKB/TrEMBL
	Fibronectin_type3	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Galactose-bd-like	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM_type	UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase	UniProtKB/TrEMBL
	Tyr-kin_ephrin_A/B_rcpt-like	UniProtKB/TrEMBL
	Tyr_kinase_ephrin_rcpt	UniProtKB/TrEMBL
	Tyr_kinase_rcpt_V_CS	UniProtKB/TrEMBL
NCBI Gene	298528	ENTREZGENE
Pfam	EphA2_TM	UniProtKB/TrEMBL
	Ephrin_lbd	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
	Pkinase_Tyr	UniProtKB/TrEMBL
	SAM_2	UniProtKB/TrEMBL
PhenoGen	Epha10	PhenoGen
PIRSF	TyrPK_ephrin_receptor	UniProtKB/TrEMBL
PRINTS	TYRKINASE	UniProtKB/TrEMBL
PROSITE	EPH_LBD	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	RECEPTOR_TYR_KIN_V_1	UniProtKB/TrEMBL
	RECEPTOR_TYR_KIN_V_2	UniProtKB/TrEMBL
	SAM_DOMAIN	UniProtKB/TrEMBL
SMART	EPH_lbd	UniProtKB/TrEMBL
	Ephrin_rec_like	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
	Gal_bind_like	UniProtKB/TrEMBL
	Kinase_like	UniProtKB/TrEMBL
	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A0G2JTH8_RAT	UniProtKB/TrEMBL
	F1LX55	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-01	Epha10	EPH receptor A10	RGD1562679	similar to Ephrin type-A receptor 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562679	similar to Ephrin type-A receptor 10	RGD1562679_predicted	similar to Ephrin type-A receptor 10 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562679_predicted	similar to Ephrin type-A receptor 10 (predicted)	LOC298528	similar to Ephrin type-A receptor 10	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC298528	similar to Ephrin type-A receptor 10			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar