Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | familial benign fleck retina | | ISO | PLA2G5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | familial benign fleck retina | | ISO | PLA2G5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Cloning, expression and partial characterization of a novel rat phospholipase A2. | Chen J, etal., Biochim Biophys Acta 1994 Nov 17;1215(1-2):115-20. |
2. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
3. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
4. | KEGG: Kyoto Encyclopedia of Genes and Genomes | KEGG |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | The functions of five distinct mammalian phospholipase A2S in regulating arachidonic acid release. Type IIa and type V secretory phospholipase A2S are functionally redundant and act in concert with cytosolic phospholipase A2. | Murakami M, etal., J Biol Chem. 1998 Jun 5;273(23):14411-23. |
7. | Distinct arachidonate-releasing functions of mammalian secreted phospholipase A2s in human embryonic kidney 293 and rat mastocytoma RBL-2H3 cells through heparan sulfate shuttling and external plasma membrane mechanisms. | Murakami M, etal., J Biol Chem. 2001 Mar 30;276(13):10083-96. Epub 2000 Dec 5. |
8. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
9. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
10. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
11. | GOA pipeline | RGD automated data pipeline |
12. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
13. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
14. | Tentative Sequence Identification Numbers | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
15. | Group IIA and group V secretory phospholipase A(2): quantitative analysis of expression and secretion and determination of the localization and routing in rat mesangial cells. | van der Helm HA, etal., Biochim Biophys Acta. 2001 Jan 15;1530(1):86-96. |
PMID:8943302 | PMID:11830583 | PMID:12477932 | PMID:14962950 | PMID:15003994 | PMID:15489334 | PMID:16407308 | PMID:19342668 | PMID:20432503 | PMID:22837859 | PMID:23533611 | PMID:23567287 |
PMID:24910243 |
Pla2g5 (Rattus norvegicus - Norway rat) |
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PLA2G5 (Homo sapiens - human) |
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Pla2g5 (Mus musculus - house mouse) |
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Pla2g5 (Chinchilla lanigera - long-tailed chinchilla) |
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PLA2G5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PLA2G5 (Canis lupus familiaris - dog) |
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Pla2g5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PLA2G5 (Sus scrofa - pig) |
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PLA2G5 (Chlorocebus sabaeus - green monkey) |
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Pla2g5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Pla2g5
434 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH143028 |
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RH144651 |
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RH134706 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 25 | 14 | |||||||||||
Low | 3 | 6 | 16 | 8 | 18 | 8 | 6 | 7 | 52 | 20 | 11 | 6 | |
Below cutoff | 8 | 25 | 17 | 1 | 17 | 2 | 4 | 18 | 27 | 6 | 2 |
RefSeq Transcripts | NM_017174 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006239139 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008764210 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008764211 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC118094 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AY651028 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC085745 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U03763 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000022716 ⟹ ENSRNOP00000022715 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000098996 ⟹ ENSRNOP00000086169 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000113045 ⟹ ENSRNOP00000087975 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_017174 ⟹ NP_058870 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239139 ⟹ XP_006239201 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008764210 ⟹ XP_008762432 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063287254 ⟹ XP_063143324 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_058870 | (Get FASTA) | NCBI Sequence Viewer |
XP_006239201 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008762432 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143324 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA82112 | (Get FASTA) | NCBI Sequence Viewer |
AAH85745 | (Get FASTA) | NCBI Sequence Viewer | |
AAT68714 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80888 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80889 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000022715 | ||
ENSRNOP00000022715.4 | |||
ENSRNOP00000086169.1 | |||
ENSRNOP00000087975.1 | |||
ENSRNOP00055031836 | |||
ENSRNOP00060045766 | |||
ENSRNOP00065030023 | |||
GenBank Protein | P51433 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_058870 ⟸ NM_017174 |
- Peptide Label: | precursor |
- UniProtKB: | Q6DQ96 (UniProtKB/Swiss-Prot), P51433 (UniProtKB/Swiss-Prot), A6ITI7 (UniProtKB/TrEMBL), A0A8I6A5J8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239201 ⟸ XM_006239139 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q6DQ96 (UniProtKB/Swiss-Prot), P51433 (UniProtKB/Swiss-Prot), A6ITI7 (UniProtKB/TrEMBL), A0A8I6A5J8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008762432 ⟸ XM_008764210 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q6DQ96 (UniProtKB/Swiss-Prot), P51433 (UniProtKB/Swiss-Prot), A6ITI7 (UniProtKB/TrEMBL), A0A8I6A5J8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000022715 ⟸ ENSRNOT00000022716 |
RefSeq Acc Id: | ENSRNOP00000087975 ⟸ ENSRNOT00000113045 |
RefSeq Acc Id: | ENSRNOP00000086169 ⟸ ENSRNOT00000098996 |
RefSeq Acc Id: | XP_063143324 ⟸ XM_063287254 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q6DQ96 (UniProtKB/Swiss-Prot), P51433 (UniProtKB/Swiss-Prot), A6ITI7 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P51433-F1-model_v2 | AlphaFold | P51433 | 1-137 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:62051 | AgrOrtholog |
BioCyc Gene | G2FUF-39440 | BioCyc |
Ensembl Genes | ENSRNOG00000016838 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00055022859 | UniProtKB/Swiss-Prot | |
ENSRNOG00060031903 | UniProtKB/Swiss-Prot | |
ENSRNOG00065021857 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000022716 | ENTREZGENE |
ENSRNOT00000022716.6 | UniProtKB/Swiss-Prot | |
ENSRNOT00000098996.1 | UniProtKB/TrEMBL | |
ENSRNOT00000113045.1 | UniProtKB/TrEMBL | |
ENSRNOT00055039251 | UniProtKB/Swiss-Prot | |
ENSRNOT00060055322 | UniProtKB/Swiss-Prot | |
ENSRNOT00065037215 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.20.90.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7192819 | IMAGE-MGC_LOAD |
InterPro | PLipase_A2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PLipase_A2_Asp_AS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PLipase_A2_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PLipase_A2_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PLipase_A2_His_AS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:29354 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:93513 | IMAGE-MGC_LOAD |
NCBI Gene | 29354 | ENTREZGENE |
PANTHER | PHOSPHOLIPASE A2 GROUP V | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11716 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Phospholip_A2_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pla2g5 | PhenoGen |
PRINTS | PHPHLIPASEA2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | PA2_ASP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PA2_HIS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000016838 | RatGTEx |
ENSRNOG00055022859 | RatGTEx | |
ENSRNOG00060031903 | RatGTEx | |
ENSRNOG00065021857 | RatGTEx | |
SMART | PA2c | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF48619 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TIGR | TC210430 | |
UniProt | A0A8I6A4T3_RAT | UniProtKB/TrEMBL |
A0A8I6A5J8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6ITI7 | ENTREZGENE, UniProtKB/TrEMBL | |
A6ITI8_RAT | UniProtKB/TrEMBL | |
P51433 | ENTREZGENE, UniProtKB/Swiss-Prot | |
Q6DQ96 | ENTREZGENE | |
UniProt Secondary | Q6DQ96 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2004-09-10 | Pla2g5 | phospholipase A2, group V | phospholipase A2, group 5 | Name updated | 1299863 | APPROVED | |
2002-06-10 | Pla2g5 | phospholipase A2, group 5 | Name updated | 70585 | PROVISIONAL |
Note Type | Note | Reference |
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