Csf3r (colony stimulating factor 3 receptor)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Csf3r (colony stimulating factor 3 receptor) Rattus norvegicus

Analyze

Symbol:

Csf3r

Name:

colony stimulating factor 3 receptor

RGD ID:

1309114

Description:

Predicted to enable cytokine receptor activity and granulocyte colony-stimulating factor binding activity. Involved in amelogenesis. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in hematologic cancer (multiple); hereditary neutrophilia; and severe congenital neutropenia (multiple). Orthologous to human CSF3R (colony stimulating factor 3 receptor); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

colony stimulating factor 3 receptor (granulocyte); granulocyte colony-stimulating factor receptor; LOC298518

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	138,298,605 - 138,318,224 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	138,301,506 - 138,317,881 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	141,001,001 - 141,020,163 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	142,771,006 - 142,790,174 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	142,779,986 - 142,799,148 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	144,031,353 - 144,051,966 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	144,031,402 - 144,051,600 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	147,793,488 - 147,820,790 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	145,374,596 - 145,394,045 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	145,387,406 - 145,403,597 (+)	NCBI
Celera	5	136,809,042 - 136,828,201 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

bacterial pneumonia (ISO)

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

chronic myelogenous leukemia, BCR-ABL1 positive (ISO)

chronic myelomonocytic leukemia (ISO)

chronic neutrophilic leukemia (ISO)

cystic fibrosis (ISO)

genetic disease (ISO)

hereditary neutrophilia (ISO,ISS)

Leukocytosis (ISO)

myelodysplastic syndrome (ISO)

myeloproliferative neoplasm (ISO)

pneumonia (ISO)

primary immunodeficiency disease (ISO)

Severe Chronic Neutropenia (ISO)

severe congenital neutropenia (ISO)

severe congenital neutropenia 7 (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluoro-1-decanol (ISO)

3-phenoxybenzoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

cypermethrin (ISO)

dextran sulfate (ISO)

dioxygen (EXP)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

indirubin (ISO)

methotrexate (ISO)

N-acetyl-L-cysteine (ISO)

nickel sulfate (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rotenone (ISO)

silicon dioxide (EXP)

Soman (EXP)

testosterone (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene 2,4-diisocyanate (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenylstannane (ISO)

tungsten (ISO)

valproic acid (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amelogenesis (IEP)

cytokine-mediated signaling pathway (IBA)

immunoglobulin mediated immune response (IBA)

neutrophil chemotaxis (ISO)

regulation of myeloid cell differentiation (ISO)

Cellular Component

external side of plasma membrane (IBA)

Molecular Function

cytokine receptor activity (IBA)

granulocyte colony-stimulating factor binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cytokine mediated signaling pathway (IEA)

Jak-Stat signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Prevalence and impact of colony stimulating factor 3 receptor (CSF3R) mutations among Egyptian acute myeloid leukemia patients.	Aref S, etal., Leuk Res. 2014 Jun;38(6):722-5. doi: 10.1016/j.leukres.2014.03.020. Epub 2014 Apr 1.
2.	Granulocyte colony stimulating factor neuroprotective effects on spinal motoneurons after ventral root avulsion.	De Freria CM, etal., Synapse. 2012 Feb;66(2):128-41. doi: 10.1002/syn.20993. Epub 2011 Nov 3.
3.	Mutations in the granulocyte colony-stimulating factor receptor gene in patients with severe congenital neutropenia.	Dong F, etal., Leukemia. 1997 Jan;11(1):120-5.
4.	The CSF3R T618I mutation causes a lethal neutrophilic neoplasia in mice that is responsive to therapeutic JAK inhibition.	Fleischman AG, etal., Blood. 2013 Nov 21;122(22):3628-31. doi: 10.1182/blood-2013-06-509976. Epub 2013 Sep 30.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Incidence of CSF3R mutations in severe congenital neutropenia and relevance for leukemogenesis: Results of a long-term survey.	Germeshausen M, etal., Blood. 2007 Jan 1;109(1):93-9. Epub 2006 Sep 19.
7.	Regulation of systemic and local neutrophil responses by G-CSF during pulmonary Pseudomonas aeruginosa infection.	Gregory AD, etal., Blood. 2007 Apr 15;109(8):3235-43. Epub 2006 Dec 21.
8.	GCSF-R expression in myelodysplastic and myeloproliferative disorders and blast dysmaturation in CML.	Hanumanthu VS and Pirruccello SJ, Am J Clin Pathol. 2013 Aug;140(2):155-64. doi: 10.1309/AJCPCLHZR5KUHUBM.
9.	Perturbed granulopoiesis in mice with a targeted mutation in the granulocyte colony-stimulating factor receptor gene associated with severe chronic neutropenia.	Hermans MH, etal., Blood. 1998 Jul 1;92(1):32-9.
10.	Mutation of the colony-stimulating factor-3 receptor gene is a rare event with poor prognosis in chronic myelomonocytic leukemia.	Kosmider O, etal., Leukemia. 2013 Sep;27(9):1946-9. doi: 10.1038/leu.2013.182. Epub 2013 Jun 18.
11.	A truncation mutant of Csf3r cooperates with PML-RARalpha to induce acute myeloid leukemia in mice.	Kunter G, etal., Exp Hematol. 2011 Dec;39(12):1136-43. doi: 10.1016/j.exphem.2011.08.013. Epub 2011 Sep 10.
12.	Activation of critical, host-induced, metabolic and stress pathways marks neutrophil entry into cystic fibrosis lungs.	Makam M, etal., Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5779-83. Epub 2009 Mar 17.
13.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
14.	Abnormalities of primitive myeloid progenitor cells expressing granulocyte colony-stimulating factor receptor in patients with severe congenital neutropenia.	Nakamura K, etal., Blood. 2000 Dec 15;96(13):4366-9.
15.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
16.	The immunohistochemical localization of the interferon-gamma and granulocyte colony-stimulating factor receptors during early amelogenesis in rat molars.	Otsuji W, etal., Arch Oral Biol. 1999 Feb;44(2):173-81.
17.	CSF3R T618I is a highly prevalent and specific mutation in chronic neutrophilic leukemia.	Pardanani A, etal., Leukemia. 2013 Sep;27(9):1870-3. doi: 10.1038/leu.2013.122. Epub 2013 Apr 22.
18.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
19.	GOA pipeline	RGD automated data pipeline
20.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
22.	Comprehensive gene review and curation	RGD comprehensive gene curation
23.	Expression and functional analysis of granulocyte colony-stimulating factor receptors on CD34++ cells in patients with myelodysplastic syndrome (MDS) and MDS-acute myeloid leukaemia.	Sultana TA, etal., Br J Haematol. 2003 Apr;121(1):63-75.
24.	A functional single-nucleotide polymorphism of the G-CSF receptor gene predisposes individuals to high-risk myelodysplastic syndrome.	Wolfler A, etal., Blood. 2005 May 1;105(9):3731-6. Epub 2005 Jan 11.

Additional References at PubMed

PMID:2158861	PMID:10485650	PMID:23136256	PMID:28656207

Genomics

Comparative Map Data

Csf3r
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	138,298,605 - 138,318,224 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	138,301,506 - 138,317,881 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	141,001,001 - 141,020,163 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	142,771,006 - 142,790,174 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	142,779,986 - 142,799,148 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	144,031,353 - 144,051,966 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	144,031,402 - 144,051,600 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	147,793,488 - 147,820,790 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	145,374,596 - 145,394,045 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	145,387,406 - 145,403,597 (+)	NCBI
Celera	5	136,809,042 - 136,828,201 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

CSF3R
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	36,466,043 - 36,483,314 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	36,466,043 - 36,483,278 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	36,931,644 - 36,948,915 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	36,704,231 - 36,721,096 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	35,207,427 - 35,224,699 (-)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	35,048,209 - 35,065,480 (-)	NCBI		HuRef
CHM1_1	1	37,047,772 - 37,065,042 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	36,328,923 - 36,346,193 (-)	NCBI		T2T-CHM13v2.0

Csf3r
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	125,917,241 - 125,938,768 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	125,918,343 - 125,938,233 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	126,023,441 - 126,044,975 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	126,024,550 - 126,044,440 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	125,701,903 - 125,721,684 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	125,527,040 - 125,546,743 (+)	NCBI		MGSCv36	mm8
Celera	4	124,355,298 - 124,375,078 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	59.77	NCBI

Csf3r
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	14,411,708 - 14,422,187 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	14,409,484 - 14,425,818 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSF3R
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	189,485,632 - 189,502,489 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	35,730,678 - 35,747,939 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	36,897,148 - 36,914,398 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	36,897,153 - 36,910,612 (-)	Ensembl	panpan1.1		panPan2

CSF3R
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	5,818,985 - 5,832,455 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	5,822,025 - 5,831,882 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	6,062,162 - 6,075,666 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	5,954,518 - 5,968,032 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	5,954,686 - 5,968,102 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	5,808,137 - 5,821,636 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	5,876,012 - 5,889,508 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	5,890,652 - 5,904,148 (+)	NCBI		UU_Cfam_GSD_1.0

Csf3r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	53,052,332 - 53,066,207 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	18,877,375 - 18,887,530 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936474	18,877,036 - 18,887,574 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSF3R
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	92,550,161 - 92,565,477 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	92,550,159 - 92,565,798 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CSF3R
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	96,380,798 - 96,397,745 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	96,384,222 - 96,398,618 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	20,341,273 - 20,358,216 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csf3r
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	19,356,361 - 19,367,860 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	19,356,848 - 19,396,209 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Csf3r
155 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	244
Count of miRNA genes:	158
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000011694
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat

Markers in Region

AA946110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	138,317,575 - 138,317,748 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	144,050,420 - 144,050,592	NCBI	Rnor6.0
Rnor_5.0	5	147,820,021 - 147,820,193	UniSTS	Rnor5.0
Rnor_5.0	5	147,808,527 - 147,808,699	UniSTS	Rnor5.0
RGSC_v3.4	5	145,393,740 - 145,393,912	UniSTS	RGSC3.4
Celera	5	136,827,896 - 136,828,068	UniSTS
RH 3.4 Map	5	912.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium					3							4
Low	3	13	51	35	16	35	4	5	74	35	34	7	4
Below cutoff		30	6	6		6	4	6			7		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000011694 ⟹ ENSRNOP00000011694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	138,301,506 - 138,317,881 (+)	Ensembl
Rnor_6.0 Ensembl	5	144,031,402 - 144,051,600 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102077 ⟹ ENSRNOP00000096023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	138,301,506 - 138,317,881 (+)	Ensembl

RefSeq Acc Id:

NM_001106685 ⟹ NP_001100155

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,680 - 138,317,881 (+)	NCBI
Rnor_6.0	5	144,031,418 - 144,050,725 (+)	NCBI
Rnor_5.0	5	147,793,488 - 147,820,790 (+)	NCBI
RGSC_v3.4	5	145,374,596 - 145,394,045 (+)	RGD
Celera	5	136,809,042 - 136,828,201 (+)	RGD

Sequence:

show sequence

GAGACAAGAGAAGAGAGAGCAAACGTGGGGGCTGGGCACAGCGCCCCAGCCCCAATCATTGCTG
AGACATGAGCATAAGCCCCTTTTCCCAAATGGAGAAATTGAGACTCAGAAAGGTGAAGTAACCC
ATCCAAGTTCACCAGGCAGGTAAACACCAAGCTGGCGAAATGGTGGGGCTGGGAGCCTGCAACC
TGACTGGAGTTACCCTGATTGTCTTGCTACTCCCCAGAAGTCTGGAGGGCTGCGGGCAAATCAG
GATCTCACCCCCCATTGTCCATCTTGGGGATCCTGTCCTGGCCTCCTGCACCATCAGCCCAAAC
TGCAGCAAACTGGACCGACAGCCAAAGATCCTATGGAGACTGCAAGATGAACCAAACCAGCCTG
GGGACAGACAGCATCACCTGCCTGACGGGTCCCAGGAGTCCATCATCACTCTGCCTCATCTGAA
CTACACTCAGGCCTTCCTCTTCTGCTTGGTGCCATGGAACAACAGCTTCCAGGTCCTGGATCAA
GCTGAGCTTCGTGCAGGCTATCCTCCTGCCAGCCCCTCCAACCTATCCTGCCTCATGTACCTCA
CCACCAACAGCCTGGTCTGCCAGTGGGAGCCAGGCCCCGAGACCCACCTGCCCACTAGCTTCAT
CCTAAAGAGCTTCAGGAGCCGCACCGGCTGTCAGTACCAGGGGGGCACCATCCTGGACTGTATG
CCCAAGAAGAGACACAGCAACTGCTCCATCCCCCGCAAACACTTGCTTCTGTACCAGAATATGG
TCATCTGGGTGCAAGCGGAGAATATGCTAGGGTCCAGCGAGTCCCCAAAGCTGTGCATTGACCC
CATGGATGTTGTGAAATTGGAGCCTCCCATGCTGCAGGCCCTGGACATTGGCCATGATATAGTC
TCTCGCCAGCCTGGCTGCCTATGGCTGAGCTGGAAGCCATGGAAGCCCAGTGAGTTCATGGAGC
AGGAGTGTGAACTCCGTTACCAGCCACAGCTTGAAGGAGCCAACTGGACCCTGGTGTCCCACCT
GCCTTCCAGCACGGACCGGTTCGAGCTCTGCAGCCTTCATCAAGCCCCAGTTTACACCCTACAG
TTGCGATGCATCCGCTCATCTCTGCCTGGACTCTGGAGCAGCTGGAGCCCTGGCCTTCAGCTGA
GGCCCACCATTAAGGCCCCCACCATCAGACTGGACACATGGTGGCAGAAGAAGCATCTGGATCC
TGAGACAGTGAGAATGCAGCTGTTCTGGAAGCCAACACCCCTGCAGAAAGACAGTGGACAGATC
CAGGGCTACCTGCTCTCCTGGAGTTGCCCAGATGGGCAAGGGCGGATCATGCACCTCTGTAACA
CCACAGAGCTCAGCTGCACCTTCCACCTGCCCTCAGAGGCCCAGAACGTGACCCTTGTGGCCTA
CAACTCGGCGGGGACCTCCTCCCCTACTCTGGTGGTTTTCCTGGAGCACGAAGGTCCAGCTGTG
ACCAGCCTGCATGCCATGGCCCAAGACCTTGGTAGCATCTGGGTAGACTGGGAAGCCCCCAGCC
TTCTGCCTCAGGGCTATCTCATTGAGTGGGGCCCGGATTCCCACAAATACAGCAATAATTCCTG
GAGGATAGAGCCCAATGGGAACACCACTGGAATTCTGTTAGAGGACAATATACATCCCTTTCAA
CTCTACAGAATCACAGTGGCTCCCCTGTACCCAGGCACCGTGGGACCCCCTGTAAATGTCTACA
CCTACTCTGGAGAGAAAGCCCTTCCTCATGCTCCAGAGCTATATCTAAAGCATGTTGGCAGGAC
CTGGGCACAGTTGGAGTGGGTACCTGAGACCCCTTGGCTGGGGATGATACCCCTCACCAACTAC
ACCATCTTCTGGACCGATGCTCGGGACCACTCCTTCTCTGTCACCCTGAACATCTCCTTTCATG
ACTTTGTCCTGGACCACCTGAAACCTGCCAGTTTGTATCACGTCTACCTCATGGCCACCAGCCG
GGCAGGGTCCACCAACAGTACAGGCCTTACCCTGATGACCATGGCCCTAGATTCATCTGATGTA
AACATTTTCCTGGGCATACTTTGCTTCGTACTTTTGTCCATTACCTGTGCAACTGCCTGGTTCT
GCTGCAAGCAAAGCAGAAAGACTTTCTTCTGGCCAAATGTGCCAGACCCAGCCCACAGCAGTCT
GAGCGCCTGGGTGCCCACCATCATGACAGAGGAAACCTTCCAGCTGCCCAGCTTCTGGGGCTCC
AGTGTGCCGTCAATCACCAAGATCACTGAACTGGAGGAGGACAAGAAACCGACCCACTGGGATC
CCAGTGAGAGCTCTGGGACTGGGAGCCTTCCAGCCGTGGTTCAGGCTTACGTGCTCCAAGGAGA
CCCAAGAGAAATTTCCAACCAGTTCCAGCCTCCCTCTAGCACTAATGACCAGGTTCTCTATGGT
CAGGTGCTTGGGAGCCCCACCAGCCCAGAAGTAGTGGGATACCTTCGGTGTGACTCCACTCAGC
CCCTCTTGGGAGGCCCCACACCCAGCCCTAAATCCTATGAAAACATCTGGTTCCATTCAAGACC
CCAGGAGACCTTTATACCCCAACCTCCAAGCCAGGAAGATGACTGTGTCTTTGGACCTCCATTT
GATTTCCCCCTCTTCCAGGGGCTCCAGGTCCATGGAGTTGAAGAACAAGGGGGTTTCTAGGACT
TTTGGGGTCCTTACATCCTGAAGGCCCTGGCCTATTCAGGAAAGATCCCACCACTAATATCTAC
TGGTCCTGAGGGAAACAGAAAGGCCCTATTTGTCTCCAGCTGTGGCCCCTAGGACCTCTCCTTC
ACTCTAACCTCCACAGGCTACACCCCTAGGTCTTTCTCACACTCCAAGGTCCAGATACATACTG
TTTACAGCCCACTAGTCACCTTGTGTCTCTCATATAATTTCAGTCCGTTAAACTGAGTGTAGGT
TTTGAGCAGGGACTAGCACGTTCACAAATCCTGGCTGGACGTAGTGATACATGCCTAGCATCCC
AACTCAAACGTTTGGGAGGAAGATGCAGGAGGATTGCAAGTTCCAGGCCAGCCTGGGCTATATG
AAGAGATCCTGCCTCAGAAATTAAGCAAAAGCCAAATAAAATTTTTTTATTAC

hide sequence

RefSeq Acc Id:

XM_008764007 ⟹ XP_008762229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,636 - 138,317,440 (+)	NCBI
Rnor_6.0	5	144,031,356 - 144,051,966 (+)	NCBI

Sequence:

show sequence

CCGCCTGTCATTAACGATGGGGCTAGAAAGAGAAGTTTCGGGAACTTGCCCCAAAAGGAGAGGA
GACAAGAGAAGAGAGAGCAAACGTGGGGGCTGGGCACAGCGCCCCAGCCCCAATGTAAGTAGGG
GGAGGGCGGAGCCCTGAAGGCCTCAGACCATTCCCCAGCCCTGACAGGGTCACATCAGGGGGCC
CAAGACAGGGGATCCTTCGGAAATGGAAGGCTCTCTGTGTGTATAGCATCAGGAAAGTCAGACA
GCTGGATCTCTTTGGGAACAGGAGCTGAGCTCAGCATTGCTGAGACATGAGCATAAGCCCCTTT
TCCCAAATGGAGAAATTGAGACTCAGAAAGGTGAAGTAACCCATCCAAGTTCACCAGGCAGGTA
AACACCAAGCTGGCGAAATGGTGGGGCTGGGAGCCTGCAACCTGACTGGAGTTACCCTGATTGT
CTTGCTACTCCCCAGAAGTCTGGAGGGCTGCGGGCAAATCAGGATCTCACCCCCCATTGTCCAT
CTTGGGGATCCTGTCCTGGCCTCCTGCACCATCAGCCCAAACTGCAGCAAACTGGACCGACAGC
CAAAGATCCTATGGAGACTGCAAGATGAACCAAACCAGCCTGGGGACAGACAGCATCACCTGCC
TGACGGGTCCCAGGAGTCCATCATCACTCTGCCTCATCTGAACTACACTCAGGCCTTCCTCTTC
TGCTTGGTGCCATGGAACAACAGCTTCCAGGTCCTGGATCAAGCTGAGCTTCGTGCAGGCTATC
CTCCTGCCAGCCCCTCCAACCTATCCTGCCTCATGTACCTCACCACCAACAGCCTGGTCTGCCA
GTGGGAGCCAGGCCCCGAGACCCACCTGCCCACTAGCTTCATCCTAAAGAGCTTCAGGAGCCGC
ACCGGCTGTCAGTACCAGGGGGGCACCATCCTGGACTGTATGCCCAAGAAGAGACACAGCAACT
GCTCCATCCCCCGCAAACACTTGCTTCTGTACCAGAATATGGTCATCTGGGTGCAAGCGGAGAA
TATGCTAGGGTCCAGCGAGTCCCCAAAGCTGTGCATTGACCCCATGGATGTTGTGAAATTGGAG
CCTCCCATGCTGCAGGCCCTGGACATTGGCCATGATATAGTCTCTCGCCAGCCTGGCTGCCTAT
GGCTGAGCTGGAAGCCATGGAAGCCCAGTGAGTTCATGGAGCAGGAGTGTGAACTCCGTTACCA
GCCACAGCTTGAAGGAGCCAACTGGACCCTGGTGTCCCACCTGCCTTCCAGCACGGACCGGTTC
GAGCTCTGCAGCCTTCATCAAGCCCCAGTCTACACCCTACAGTTGCGATGCATCCGCTCATCTC
TGCCTGGACTCTGGAGCAGCTGGAGCCCTGGCCTTCAGCTGAGGCCCACCATTAAGGCCCCCAC
CATCAGACTGGACACATGGTGGCAGAAGAAGCATCTGGATCCTGAGACAGTGAGAATGCAGCTG
TTCTGGAAGCCAACACCCCTGCAGAAAGACAGTGGACAGATCCAGGGCTACCTGCTCTCCTGGA
GTTGCCCAGATGGGCAAGGGCGGATCATGCACCTCTGTAACACCACAGAGCTCAGCTGCACCTT
CCACCTGCCCTCAGAGGCCCAGAACGTGACCCTTGTGGCCTACAACTCGGCGGGGACCTCCTCC
CCTACTCTGGTGGTTTTCCTGGAGCACGAAGGTCCAGCTGTGACCAGCCTGCATGCCATGGCCC
AAGACCTTGGTAGCATCTGGGTAGACTGGGAAGCCCCCAGCCTTCTGCCTCAGGGCTATCTCAT
TGAGTGGGGCCCGGATTCCCACAAATACAGCAATAATTCCTGGAGGATAGAGCCCAATGGGAAC
ACCACTGGAATTCTGTTAGAGGACAATATACATCCCTTTCAACTCTACAGAATCACAGTGGCTC
CCCTGTACCCAGGCACCGTGGGACCCCCTGTAAATGTCTACACCTACTCTGGAGAGAAAGCCCT
TCCTCATGCTCCAGAGCTATATCTAAAGCATGTTGGCAGGACCTGGGCACAGTTGGAGTGGGTA
CCTGAGACCCCTTGGCTGGGGATGATACCCCTCACCAACTACACCATCTTCTGGACCGATGCTC
GGGACCACTCCTTCTCTGTCACCCTGAACATCTCCTTTCATGACTTTGTCCTGGACCACCTGAA
ACCTGCCAGTTTGTATCACGTCTACCTCATGGCCACCAGCCGGGCAGGGTCCACCAACAGTACA
GGCCTTACCCTGATGACCATGGCCCTAGATTCATCTGATGTAAACATTTTCCTGGGCATACTTT
GCTTCGTACTTTTGTCCATTACCTGTGCAACTGCCTGGTTCTGCTGCAAGCAAAGCAGAAAGAC
TTTCTTCTGGCCAAATGTGCCAGACCCAGCCCACAGCAGTCTGAGCGCCTGGGTGCCCACCATC
ATGACAGAGGAAACCTTCCAGCTGCCCAGCTTCTGGGGCTCCAGTGTGCCGTCAATCACCAAGA
TCACTGAACTGGAGGAGGACAAGAAACCGACCCACTGGGATCCCAGTGAGAGCTCTGGGACTGG
GAGCCTTCCAGCCGTGGTTCAGGCTTACGTGCTCCAAGGAGACCCAAGAGAAATTTCCAACCAG
TTCCAGCCTCCCTCTAGCACTAATGACCAGGTTCTCTATGGTCAGGTGCTTGGGAGCCCCACCA
GCCCAGAAGTAGTGGGATACCTTCGGTGTGACTCCACTCAGCCCCTCTTGGGAGGCCCCACACC
CAGCCCTAAATCCTATGAAAACATCTGGTTCCATTCAAGACCCCAGGAGACCTTTATACCCCAA
CCTCCAAGCCAGGAAGATGACTGTGTCTTTGGACCTCCATTTGATTTCCCCCTCTTCCAGGGGC
TCCAGGTCCATGGAGTTGAAGAACAAGGGGGTTTCTAGGACTTTTGGGGTCCTTACATCCTGAA
GGCCCTGGCCTATTCAGGAAAGATCCCACCACTAATATCTACTGGTCCTGAGGGAAACAGAAAG
GCCCTATTTGTCTCCAGCTGTGGCCCCTAGGACCTCTCCTTCACTCTAACCTCCACAGGCTACA
CCCCTAGGTCTTTCTCACACTCCAAGGTCCAGATACATACTGTTTACAGCCCACTAGTCACCTT
GTGTCTCTCATATAATTTCAGTCCGTTAAACTGAGTGTAGGTTTTGAGCAGGGACTAGCACGTT
CACAAATCCTGGCTGGACGTAGTGATACATGCCTAGCATCCCAACTCAAACGTTTGGGAGGAAG
ATGCAGGAGGATTGCAAGTTCCAGGCCAGCCTGGGCTATATGAAGAGATCCTGCCTCAGAAATT
AAGCAAAAGCCAAATAAAATTTTTTTATTACATTTACTTTTTGTTGGTGGGGTTGGGGGCTCAC
AGGCAAAGGTCAGACACCTTAAGGGAATTAACTCTGGCCTCCAGCCTGTGGATTTTGGGAGGTG
AACGTAAGGTTTAGTGGCAAGCATCTTTCCCCAGGGAGGCATTTCACTAGTCCCAGAGAGGAGT
CTCTTAAGTATAGCTAAGTGTCTTTTACACTTGTCTGTCTGTCTGTTTTTCAAAAAAAGGTTTC
TCTGTGTACCTGTCCTATCTGTCCTGGAACTCACTCTGTAGAACAGGCTGGCCTCAAACTCAGA
GATCCACCTGCCTCTGTCTTCTGAATGGTGGGAATAAAGGCCTGCACACCACCACCCAGCAGTG
TCATTTCCTCTCAGGGCCCAGCAGTCATGAAGCTATTTCTCAGTCAGTCATCTGTTCCGTTCCT
TCCCTCCTCTTCCTCCTTCCTTCCTTCCCTCCCTTCCTCTTTCCTTCCTTCCTTCCTTCCCTCC
CTCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTCTTGCCTAGCATCTA
AGATTCAAAAGAGACAACCCCCATAGACAGCTGCTATACTGGCAATGGGGTCTTAAAACTGATA
ATCAGAAAACAAGCAAGAGCTTCTTGGAAGGAACTGGAGTGTTAGGGAACACAGACCTGGGAAG
AGAGGAGCCCTGCTGCAGCTGCTGCTGCTGCAATCCCAACATGTGAGAGGCTGAAACAGGAAGG
CTGTCCATTTGAGGTTAAGTTGTGATACACAGCAAGTCAAGAGCCTCTCTCTGCTTCTGCCTCT
CTCCCTCTTTGTGTATCTGTCTGTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTGTTGATTGGTTTTGGACTTTTTCCCCTTGGGGAGACTCCAATACCGAT
TTCTGTGGTGATTACACACACATTCCCAGTAGCAATGTAGAAGAACGTTTTCAGCTATGCTCAC
GCCTTTAATCACAGCACTCAGGAGGCAGAAGAAAGCAGATGTCTGAGTTTGAGCCAGCCTGGTC
TACAGAGTGAGTAAATTCCAGGATACCCAGGGCTATCAAACAAACATTTCTTGTCACTCAGGGT
CTTGGTGACAGTCATTTCTCCTGGGGTGAGATGGCATTTCAATGTATTTTTCAATTTGCATTTC
CATTGTGGCCAGGTGTGTTGAATATTTTTTCCAATATCTATTAACAATTCTTTTTT

hide sequence

RefSeq Acc Id:

XM_017593289 ⟹ XP_017448778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,632 - 138,318,224 (+)	NCBI
Rnor_6.0	5	144,031,355 - 144,051,966 (+)	NCBI

Sequence:

show sequence

CCCGCCTGTCATTAACGATGGGGCTAGAAAGAGAAGTTTCGGGAACTTGCCCCAAAAGGAGAGG
AGACAAGAGAAGAGAGAGCAAACGTGGGGGCTGGGCACAGCGCCCCAGCCCCAATGTAAGTAGG
GGGAGGGCGGAGCCCTGAAGGCCTCAGACCATTCCCCAGCCCTGACAGGGTCACATCAGGGGGC
CCAAGACAGGGGATCCTTCGGAAATGGAAGGCTCTCTGTGTGTATAGCATCAGGAAAGTCAGAC
AGCTGGATCTCTTTGGGAACAGGAGCTGAGCTCAGCATTGCTGAGACATGAGCATAAGCCCCTT
TTCCCAAATGGAGAAATTGAGACTCAGAAAGGTGAAGTAACCCATCCAAGTTCACCAGGCAGGT
AAACACCAAGCTGGCGAAATGGTGGGGCTGGGAGCCTGCAACCTGACTGGAGTTACCCTGATTG
TCTTGCTACTCCCCAGAAGTCTGGAGGGCTGCGGGCAAATCAGGATCTCACCCCCCATTGTCCA
TCTTGGGGATCCTGTCCTGGCCTCCTGCACCATCAGCCCAAACTGCAGCAAACTGGACCGACAG
CCAAAGATCCTATGGAGACTGCAAGATGAACCAAACCAGCCTGGGGACAGACAGCATCACCTGC
CTGACGGGTCCCAGGAGTCCATCATCACTCTGCCTCATCTGAACTACACTCAGGCCTTCCTCTT
CTGCTTGGTGCCATGGAACAACAGCTTCCAGGTCCTGGATCAAGCTGAGCTTCGTGCAGGCTAT
CCTCCTGCCAGCCCCTCCAACCTATCCTGCCTCATGTACCTCACCACCAACAGCCTGGTCTGCC
AGTGGGAGCCAGGCCCCGAGACCCACCTGCCCACTAGCTTCATCCTAAAGAGCTTCAGGAGCCG
CACCGGCTGTCAGTACCAGGGGGGCACCATCCTGGACTGTATGCCCAAGAAGAGACACAGCAAC
TGCTCCATCCCCCGCAAACACTTGCTTCTGTACCAGAATATGGTCATCTGGGTGCAAGCGGAGA
ATATGCTAGGGTCCAGCGAGTCCCCAAAGCTGTGCATTGACCCCATGGATGTTGGCAGGGAAAG
TTTGACAACCCCACCTCCTGCAGTGAAATTGGAGCCTCCCATGCTGCAGGCCCTGGACATTGGC
CATGATATAGTCTCTCGCCAGCCTGGCTGCCTATGGCTGAGCTGGAAGCCATGGAAGCCCAGTG
AGTTCATGGAGCAGGAGTGTGAACTCCGTTACCAGCCACAGCTTGAAGGAGCCAACTGGACCCT
GGTGAGGCCGAGAAAAACCTCGAGATGGAGGTGGGGAATGGAGAGAGGGCAAGCTGGATTTAGT
GTTACCCCTCCCACACACCAGGTGTCCCACCTGCCTTCCAGCACGGACCGGTTCGAGCTCTGCA
GCCTTCATCAAGCCCCAGTCTACACCCTACAGTTGCGATGCATCCGCTCATCTCTGCCTGGACT
CTGGAGCAGCTGGAGCCCTGGCCTTCAGCTGAGGCCCACCATTAAGGCCCCCACCATCAGACTG
GACACATGGTGGCAGAAGAAGCATCTGGATCCTGAGACAGTGAGAATGCAGCTGTTCTGGAAGC
CAACACCCCTGCAGAAAGACAGTGGACAGATCCAGGGCTACCTGCTCTCCTGGAGTTGCCCAGA
TGGGCAAGGGCGGATCATGCACCTCTGTAACACCACAGAGCTCAGCTGCACCTTCCACCTGCCC
TCAGAGGCCCAGAACGTGACCCTTGTGGCCTACAACTCGGCGGGGACCTCCTCCCCTACTCTGG
TGGTTTTCCTGGAGCACGAAGGTCCAGCTGTGACCAGCCTGCATGCCATGGCCCAAGACCTTGG
TAGCATCTGGGTAGACTGGGAAGCCCCCAGCCTTCTGCCTCAGGGCTATCTCATTGAGTGGGGC
CCGGATTCCCACAAATACAGCAATAATTCCTGGAGGATAGAGCCCAATGGGAACACCACTGGAA
TTCTGTTAGAGGACAATATACATCCCTTTCAACTCTACAGAATCACAGTGGCTCCCCTGTACCC
AGGCACCGTGGGACCCCCTGTAAATGTCTACACCTACTCTGGAGAGAAAGCCCTTCCTCATGCT
CCAGAGCTATATCTAAAGCATGTTGGCAGGACCTGGGCACAGTTGGAGTGGGTACCTGAGACCC
CTTGGCTGGGGATGATACCCCTCACCAACTACACCATCTTCTGGACCGATGCTCGGGACCACTC
CTTCTCTGTCACCCTGAACATCTCCTTTCATGACTTTGTCCTGGACCACCTGAAACCTGCCAGT
TTGTATCACGTCTACCTCATGGCCACCAGCCGGGCAGGGTCCACCAACAGTACAGGCCTTACCC
TGATGACCATGGCCCTAGATTCATCTGATGTAAACATTTTCCTGGGCATACTTTGCTTCGTACT
TTTGTCCATTACCTGTGCAACTGCCTGGTTCTGCTGCAAGCAAAGCAGAAAGACTTTCTTCTGG
CCAAATGTGCCAGACCCAGCCCACAGCAGTCTGAGCGCCTGGGTGCCCACCATCATGACAGAGG
AAACCTTCCAGCTGCCCAGCTTCTGGGGCTCCAGTGTGCCGTCAATCACCAAGATCACTGAACT
GGAGGAGGACAAGAAACCGACCCACTGGGATCCCAGTGAGAGCTCTGGGACTGGGAGCCTTCCA
GCCGTGGTTCAGGCTTACGTGCTCCAAGGAGACCCAAGAGAAATTTCCAACCAGTTCCAGCCTC
CCTCTAGCACTAATGACCAGGTTCTCTATGGTCAGGTGCTTGGGAGCCCCACCAGCCCAGAAGT
AGTGGGATACCTTCGGTGTGACTCCACTCAGCCCCTCTTGGGAGGCCCCACACCCAGCCCTAAA
TCCTATGAAAACATCTGGTTCCATTCAAGACCCCAGGAGACCTTTATACCCCAACCTCCAAGCC
AGGAAGATGACTGTGTCTTTGGACCTCCATTTGATTTCCCCCTCTTCCAGGGGCTCCAGGTCCA
TGGAGTTGAAGAACAAGGGGGTTTCTAGGACTTTTGGGGTCCTTACATCCTGAAGGCCCTGGCC
TATTCAGGAAAGATCCCACCACTAATATCTACTGGTCCTGAGGGAAACAGAAAGGCCCTATTTG
TCTCCAGCTGTGGCCCCTAGGACCTCTCCTTCACTCTAACCTCCACAGGCTACACCCCTAGGTC
TTTCTCACACTCCAAGGTCCAGATACATACTGTTTACAGCCCACTAGTCACCTTGTGTCTCTCA
TATAATTTCAGTCCGTTAAACTGAGTGTAGGTTTTGAGCAGGGACTAGCACGTTCACAAATCCT
GGCTGGACGTAGTGATACATGCCTAGCATCCCAACTCAAACGTTTGGGAGGAAGATGCAGGAGG
ATTGCAAGTTCCAGGCCAGCCTGGGCTATATGAAGAGATCCTGCCTCAGAAATTAAGCAAAAGC
CAAATAAAATTTTTTTATTACATTTACTTTTTGTTGGTGGGGTTGGGGGCTCACAGGCAAAGGT
CAGACACCTTAAGGGAATTAACTCTGGCCTCCAGCCTGTGGATTTTGGGAGGTGAACGTAAGGT
TTAGTGGCAAGCATCTTTCCCCAGGGAGGCATTTCACTAGTCCCAGAGAGGAGTCTCTTAAGTA
TAGCTAAGTGTCTTTTACACTTGTCTGTCTGTCTGTTTTTCAAAAAAAGGTTTCTCTGTGTACC
TGTCCTATCTGTCCTGGAACTCACTCTGTAGAACAGGCTGGCCTCAAACTCAGAGATCCACCTG
CCTCTGTCTTCTGAATGGTGGGAATAAAGGCCTGCACACCACCACCCAGCAGTGTCATTTCCTC
TCAGGGCCCAGCAGTCATGAAGCTATTTCTCAGTCAGTCATCTGTTCCGTTCCTTCCCTCCTCT
TCCTCCTTCCTTCCTTCCCTCCCTTCCTCTTTCCTTCCTTCCTTCCTTCCCTCCCTCCCTCCCT
CCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTCTTGCCTAGCATCTAAGATTCAAAA
GAGACAACCCCCATAGACAGCTGCTATACTGGCAATGGGGTCTTAAAACTGATAATCAGAAAAC
AAGCAAGAGCTTCTTGGAAGGAACTGGAGTGTTAGGGAACACAGACCTGGGAAGAGAGGAGCCC
TGCTGCAGCTGCTGCTGCTGCAATCCCAACATGTGAGAGGCTGAAACAGGAAGGCTGTCCATTT
GAGGTTAAGTTGTGATACACAGCAAGTCAAGAGCCTCTCTCTGCTTCTGCCTCTCTCCCTCTTT
GTGTATCTGTCTGTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTTGTTGATTGGTTTTGGACTTTTTCCCCTTGGGGAGACTCCAATACCGATTTCTGTGGTG
ATTACACACACATTCCCAGTAGCAATGTAGAAGAACGTTTTCAGCTATGCTCACGCCTTTAATC
ACAGCACTCAGGAGGCAGAAGAAAGCAGATGTCTGAGTTTGAGCCAGCCTGGTCTACAGAGTGA
GTAAATTCCAGGATACCCAGGGCTATCAAACAAACATTTCTTGTCACTCAGGGTCTTGGTGACA
GTCATTTCTCCTGGGGTGAGATGGCATTTCAATGTATTTTTCAATTTGCATTTCCATTGTGGCC
AGGTGTGTTGAATATTTTTTCCAATATCTATTAACAATTCTTTTTT

hide sequence

RefSeq Acc Id:

XM_039109617 ⟹ XP_038965545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,631 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109618 ⟹ XP_038965546

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,605 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109619 ⟹ XP_038965547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,630 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109620 ⟹ XP_038965548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,661 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109621 ⟹ XP_038965549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,631 - 138,318,224 (+)	NCBI

RefSeq Acc Id:

XM_039109622 ⟹ XP_038965550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,633 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109623 ⟹ XP_038965551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,634 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109625 ⟹ XP_038965553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,298,630 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109626 ⟹ XP_038965554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,305,756 - 138,317,440 (+)	NCBI

RefSeq Acc Id:

XM_039109627 ⟹ XP_038965555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,306,099 - 138,317,440 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100155	(Get FASTA)	NCBI Sequence Viewer
	XP_008762229	(Get FASTA)	NCBI Sequence Viewer
	XP_017448778	(Get FASTA)	NCBI Sequence Viewer
	XP_038965545	(Get FASTA)	NCBI Sequence Viewer
	XP_038965546	(Get FASTA)	NCBI Sequence Viewer
	XP_038965547	(Get FASTA)	NCBI Sequence Viewer
	XP_038965548	(Get FASTA)	NCBI Sequence Viewer
	XP_038965549	(Get FASTA)	NCBI Sequence Viewer
	XP_038965550	(Get FASTA)	NCBI Sequence Viewer
	XP_038965551	(Get FASTA)	NCBI Sequence Viewer
	XP_038965553	(Get FASTA)	NCBI Sequence Viewer
	XP_038965554	(Get FASTA)	NCBI Sequence Viewer
	XP_038965555	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80433	(Get FASTA)	NCBI Sequence Viewer
	EDL80434	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001100155 ⟸ NM_001106685
- Peptide Label:	precursor
- UniProtKB:	D4A3R0 (UniProtKB/TrEMBL), A6IS82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGLGACNLTGVTLIVLLLPRSLEGCGQIRISPPIVHLGDPVLASCTISPNCSKLDRQPKILWR LQDEPNQPGDRQHHLPDGSQESIITLPHLNYTQAFLFCLVPWNNSFQVLDQAELRAGYPPASPS NLSCLMYLTTNSLVCQWEPGPETHLPTSFILKSFRSRTGCQYQGGTILDCMPKKRHSNCSIPRK HLLLYQNMVIWVQAENMLGSSESPKLCIDPMDVVKLEPPMLQALDIGHDIVSRQPGCLWLSWKP WKPSEFMEQECELRYQPQLEGANWTLVSHLPSSTDRFELCSLHQAPVYTLQLRCIRSSLPGLWS SWSPGLQLRPTIKAPTIRLDTWWQKKHLDPETVRMQLFWKPTPLQKDSGQIQGYLLSWSCPDGQ GRIMHLCNTTELSCTFHLPSEAQNVTLVAYNSAGTSSPTLVVFLEHEGPAVTSLHAMAQDLGSI WVDWEAPSLLPQGYLIEWGPDSHKYSNNSWRIEPNGNTTGILLEDNIHPFQLYRITVAPLYPGT VGPPVNVYTYSGEKALPHAPELYLKHVGRTWAQLEWVPETPWLGMIPLTNYTIFWTDARDHSFS VTLNISFHDFVLDHLKPASLYHVYLMATSRAGSTNSTGLTLMTMALDSSDVNIFLGILCFVLLS ITCATAWFCCKQSRKTFFWPNVPDPAHSSLSAWVPTIMTEETFQLPSFWGSSVPSITKITELEE DKKPTHWDPSESSGTGSLPAVVQAYVLQGDPREISNQFQPPSSTNDQVLYGQVLGSPTSPEVVG YLRCDSTQPLLGGPTPSPKSYENIWFHSRPQETFIPQPPSQEDDCVFGPPFDFPLFQGLQVHGV EEQGGF hide sequence

RefSeq Acc Id:	XP_008762229 ⟸ XM_008764007
- Peptide Label:	isoform X5
- UniProtKB:	D4A3R0 (UniProtKB/TrEMBL), A6IS82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGLGACNLTGVTLIVLLLPRSLEGCGQIRISPPIVHLGDPVLASCTISPNCSKLDRQPKILWR LQDEPNQPGDRQHHLPDGSQESIITLPHLNYTQAFLFCLVPWNNSFQVLDQAELRAGYPPASPS NLSCLMYLTTNSLVCQWEPGPETHLPTSFILKSFRSRTGCQYQGGTILDCMPKKRHSNCSIPRK HLLLYQNMVIWVQAENMLGSSESPKLCIDPMDVVKLEPPMLQALDIGHDIVSRQPGCLWLSWKP WKPSEFMEQECELRYQPQLEGANWTLVSHLPSSTDRFELCSLHQAPVYTLQLRCIRSSLPGLWS SWSPGLQLRPTIKAPTIRLDTWWQKKHLDPETVRMQLFWKPTPLQKDSGQIQGYLLSWSCPDGQ GRIMHLCNTTELSCTFHLPSEAQNVTLVAYNSAGTSSPTLVVFLEHEGPAVTSLHAMAQDLGSI WVDWEAPSLLPQGYLIEWGPDSHKYSNNSWRIEPNGNTTGILLEDNIHPFQLYRITVAPLYPGT VGPPVNVYTYSGEKALPHAPELYLKHVGRTWAQLEWVPETPWLGMIPLTNYTIFWTDARDHSFS VTLNISFHDFVLDHLKPASLYHVYLMATSRAGSTNSTGLTLMTMALDSSDVNIFLGILCFVLLS ITCATAWFCCKQSRKTFFWPNVPDPAHSSLSAWVPTIMTEETFQLPSFWGSSVPSITKITELEE DKKPTHWDPSESSGTGSLPAVVQAYVLQGDPREISNQFQPPSSTNDQVLYGQVLGSPTSPEVVG YLRCDSTQPLLGGPTPSPKSYENIWFHSRPQETFIPQPPSQEDDCVFGPPFDFPLFQGLQVHGV EEQGGF hide sequence

RefSeq Acc Id:	XP_017448778 ⟸ XM_017593289
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B3M3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGLGACNLTGVTLIVLLLPRSLEGCGQIRISPPIVHLGDPVLASCTISPNCSKLDRQPKILWR LQDEPNQPGDRQHHLPDGSQESIITLPHLNYTQAFLFCLVPWNNSFQVLDQAELRAGYPPASPS NLSCLMYLTTNSLVCQWEPGPETHLPTSFILKSFRSRTGCQYQGGTILDCMPKKRHSNCSIPRK HLLLYQNMVIWVQAENMLGSSESPKLCIDPMDVGRESLTTPPPAVKLEPPMLQALDIGHDIVSR QPGCLWLSWKPWKPSEFMEQECELRYQPQLEGANWTLVRPRKTSRWRWGMERGQAGFSVTPPTH QVSHLPSSTDRFELCSLHQAPVYTLQLRCIRSSLPGLWSSWSPGLQLRPTIKAPTIRLDTWWQK KHLDPETVRMQLFWKPTPLQKDSGQIQGYLLSWSCPDGQGRIMHLCNTTELSCTFHLPSEAQNV TLVAYNSAGTSSPTLVVFLEHEGPAVTSLHAMAQDLGSIWVDWEAPSLLPQGYLIEWGPDSHKY SNNSWRIEPNGNTTGILLEDNIHPFQLYRITVAPLYPGTVGPPVNVYTYSGEKALPHAPELYLK HVGRTWAQLEWVPETPWLGMIPLTNYTIFWTDARDHSFSVTLNISFHDFVLDHLKPASLYHVYL MATSRAGSTNSTGLTLMTMALDSSDVNIFLGILCFVLLSITCATAWFCCKQSRKTFFWPNVPDP AHSSLSAWVPTIMTEETFQLPSFWGSSVPSITKITELEEDKKPTHWDPSESSGTGSLPAVVQAY VLQGDPREISNQFQPPSSTNDQVLYGQVLGSPTSPEVVGYLRCDSTQPLLGGPTPSPKSYENIW FHSRPQETFIPQPPSQEDDCVFGPPFDFPLFQGLQVHGVEEQGGF hide sequence

RefSeq Acc Id:

ENSRNOP00000011694 ⟸ ENSRNOT00000011694

RefSeq Acc Id:	XP_038965546 ⟸ XM_039109618
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B3M3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965553 ⟸ XM_039109625
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038965547 ⟸ XM_039109619
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B3M3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965549 ⟸ XM_039109621
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038965545 ⟸ XM_039109617
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B3M3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965550 ⟸ XM_039109622
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965551 ⟸ XM_039109623
- Peptide Label:	isoform X4
- UniProtKB:	D4A3R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965548 ⟸ XM_039109620
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B3M3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965554 ⟸ XM_039109626
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038965555 ⟸ XM_039109627
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSRNOP00000096023 ⟸ ENSRNOT00000102077

Protein Domains

Fibronectin type-III

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3R0-F1-model_v2	AlphaFold	D4A3R0	1-838	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309114	AgrOrtholog
BioCyc Gene	G2FUF-39911	BioCyc
Ensembl Genes	ENSRNOG00000008759	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000011694	ENTREZGENE
	ENSRNOP00000011694.6	UniProtKB/TrEMBL
	ENSRNOP00000096023	ENTREZGENE
	ENSRNOP00000096023.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011694	ENTREZGENE
	ENSRNOT00000011694.7	UniProtKB/TrEMBL
	ENSRNOT00000102077	ENTREZGENE
	ENSRNOT00000102077.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Hematopoietin_rcpt_gp130_CS	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	IgC2-like_lig-bd	UniProtKB/TrEMBL
KEGG Report	rno:298518	UniProtKB/TrEMBL
NCBI Gene	298518	ENTREZGENE
PANTHER	CYTOKINE RECEPTOR	UniProtKB/TrEMBL
	GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR	UniProtKB/TrEMBL
Pfam	Lep_receptor_Ig	UniProtKB/TrEMBL
PhenoGen	Csf3r	PhenoGen
PROSITE	FN3	UniProtKB/TrEMBL
	HEMATOPO_REC_L_F2	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8I6B3M3	ENTREZGENE, UniProtKB/TrEMBL
	A6IS82	ENTREZGENE, UniProtKB/TrEMBL
	D4A3R0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-12	Csf3r	colony stimulating factor 3 receptor	Csf3r	colony stimulating factor 3 receptor (granulocyte)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Csf3r	colony stimulating factor 3 receptor (granulocyte)	Csf3r_predicted	colony stimulating factor 3 receptor (granulocyte) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Csf3r_predicted	colony stimulating factor 3 receptor (granulocyte) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)