Csf3r (colony stimulating factor 3 receptor) - Rat Genome Database

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Gene: Csf3r (colony stimulating factor 3 receptor) Chinchilla lanigera
Analyze
Symbol: Csf3r
Name: colony stimulating factor 3 receptor
RGD ID: 9026414
Description: ENCODES a protein that exhibits granulocyte colony-stimulating factor binding (ortholog); INVOLVED IN amelogenesis (ortholog); neutrophil chemotaxis (ortholog); regulation of myeloid cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); bacterial pneumonia (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: colony stimulating factor 3 receptor (granulocyte); granulocyte colony-stimulating factor receptor
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,411,708 - 14,422,187 (-)Ensembl
ChiLan1.0NW_00495545214,409,484 - 14,425,818 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csf3r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,411,708 - 14,422,187 (-)Ensembl
ChiLan1.0NW_00495545214,409,484 - 14,425,818 (-)NCBIChiLan1.0ChiLan1.0
CSF3R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,466,043 - 36,483,314 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,466,043 - 36,483,278 (-)Ensemblhg38GRCh38
GRCh37136,931,644 - 36,948,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,704,231 - 36,721,096 (-)NCBIBuild 36Build 36hg18NCBI36
Celera135,207,427 - 35,224,699 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef135,048,209 - 35,065,480 (-)NCBIHuRef
CHM1_1137,047,772 - 37,065,042 (-)NCBICHM1_1
T2T-CHM13v2.0136,328,923 - 36,346,193 (-)NCBIT2T-CHM13v2.0
Csf3r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394125,917,241 - 125,938,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4125,918,343 - 125,938,233 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384126,023,441 - 126,044,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,024,550 - 126,044,440 (+)Ensemblmm10GRCm38
MGSCv374125,701,903 - 125,721,684 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364125,527,040 - 125,546,743 (+)NCBIMGSCv36mm8
Celera4124,355,298 - 124,375,078 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map459.77NCBI
Csf3r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,583,126 - 143,604,382 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5143,583,213 - 143,602,411 (+)EnsemblGRCr8
mRatBN7.25138,298,605 - 138,318,224 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,301,506 - 138,317,881 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5141,001,001 - 141,020,163 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,771,006 - 142,790,174 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,779,986 - 142,799,148 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,031,353 - 144,051,966 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,031,402 - 144,051,600 (+)Ensemblrn6Rnor6.0
Rnor_5.05147,793,488 - 147,820,790 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45145,374,596 - 145,394,045 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5136,809,042 - 136,828,201 (+)NCBICelera
RGSC_v3.15145,387,406 - 145,403,597 (+)NCBI
Cytogenetic Map5q36NCBI
CSF3R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,364,279 - 190,381,151 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,485,632 - 189,502,489 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,730,678 - 35,747,939 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,897,148 - 36,914,398 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,897,153 - 36,910,612 (-)EnsemblpanPan2panpan1.1
CSF3R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,818,985 - 5,832,455 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,822,025 - 5,831,882 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha156,062,162 - 6,075,666 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0155,954,518 - 5,968,032 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,954,686 - 5,968,102 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,808,137 - 5,821,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,876,012 - 5,889,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,890,652 - 5,904,148 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Csf3r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,052,332 - 53,066,207 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,877,375 - 18,887,530 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,877,036 - 18,887,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF3R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,550,161 - 92,565,477 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1692,550,159 - 92,565,798 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CSF3R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,380,798 - 96,397,745 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,384,222 - 96,398,618 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603320,341,273 - 20,358,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csf3r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,356,361 - 19,367,860 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476419,356,848 - 19,396,209 (-)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020300   ⟹   ENSCLAP00000020106
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545214,411,708 - 14,422,187 (-)Ensembl
RefSeq Acc Id: XM_005395200   ⟹   XP_005395257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,410,856 - 14,425,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519565   ⟹   XP_013375019
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,410,856 - 14,425,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519566   ⟹   XP_013375020
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,410,856 - 14,425,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519567   ⟹   XP_013375021
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,410,856 - 14,425,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519568   ⟹   XP_013375022
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,410,856 - 14,425,812 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519569   ⟹   XP_013375023
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,409,484 - 14,425,818 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519570   ⟹   XP_013375024
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,412,111 - 14,425,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519571   ⟹   XP_013375025
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545214,409,714 - 14,425,814 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005395257   ⟸   XM_005395200
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375023   ⟸   XM_013519569
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375025   ⟸   XM_013519571
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375022   ⟸   XM_013519568
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375021   ⟸   XM_013519567
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375020   ⟸   XM_013519566
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375019   ⟸   XM_013519565
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375024   ⟸   XM_013519570
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YSI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020106   ⟸   ENSCLAT00000020300
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020300 ENTREZGENE
  ENSCLAT00000020300.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Hematopoietin_rcpt_Gp130_CS UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  IgC2-like_lig-bd UniProtKB/TrEMBL
  Type1_Cytokine_Rcpt_Type2 UniProtKB/TrEMBL
NCBI Gene Csf3r ENTREZGENE
PANTHER INTERLEUKIN-27 RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
  INTERLEUKIN-27 RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  Lep_receptor_Ig UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  HEMATOPO_REC_L_F2 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2YSI5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Csf3r  colony stimulating factor 3 receptor    colony stimulating factor 3 receptor (granulocyte)  Symbol and/or name change 5135510 APPROVED