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Gene: Armh1 (armadillo-like helical domain containing 1) Rattus norvegicus

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Symbol:

Armh1

Name:

armadillo-like helical domain containing 1

RGD ID:

1563714

Description:

Predicted to be located in cytosol and plasma membrane. Orthologous to human ARMH1 (armadillo like helical domain containing 1); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

armadillo-like helical domain containing protein 1; hypothetical protein LOC500531; LOC500531; RGD1563714; RGD1563714; similar to hypothetical LOC339541; uncharacterized protein C1orf228 homolog; uncharacterized protein LOC500531

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,919,057 - 135,958,653 (-)	NCBI		GRCr8
mRatBN7.2	5	130,680,955 - 130,722,062 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,682,485 - 130,722,062 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	133,305,037 - 133,345,152 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	135,059,650 - 135,099,750 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	135,082,082 - 135,122,179 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	136,073,056 - 136,112,344 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	136,073,056 - 136,112,344 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,866,869 - 139,905,838 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	137,518,820 - 137,559,821 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	129,203,621 - 129,243,000 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh1	Rat	Charcot-Marie-Tooth disease dominant intermediate C		ISO	ARMH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate C	ClinVar	PMID:28492532
Armh1	Rat	developmental and epileptic encephalopathy		ISO	ARMH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
Armh1	Rat	early infantile epileptic encephalopathy		ISO	ARMH1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh1	Rat	17beta-estradiol	decreases expression	ISO	ARMH1 (Homo sapiens)	6480464	Estradiol results in decreased expression of ARMH1 mRNA	CTD	PMID:31614463
Armh1	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of ARMH1 mRNA	CTD	PMID:24780913
Armh1	Rat	antirheumatic drug	decreases expression	ISO	ARMH1 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of ARMH1 mRNA	CTD	PMID:24449571
Armh1	Rat	aristolochic acid A	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of ARMH1 mRNA	CTD	PMID:33212167
Armh1	Rat	arsane	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of ARMH1 mRNA	CTD	PMID:32525701
Armh1	Rat	arsenic atom	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of ARMH1 mRNA	CTD	PMID:32525701
Armh1	Rat	benzene-1,2,4-triol	decreases expression	ISO	ARMH1 (Homo sapiens)	6480464	hydroxyhydroquinone results in decreased expression of ARMH1 mRNA	CTD	PMID:39245080
Armh1	Rat	benzo[a]pyrene	increases methylation	ISO	ARMH1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ARMH1 5' UTR	CTD	PMID:27901495
Armh1	Rat	benzo[a]pyrene	decreases expression	ISO	ARMH1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of ARMH1 mRNA	CTD	PMID:32234424
Armh1	Rat	benzo[a]pyrene	affects methylation	ISO	ARMH1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of C1ORF228 intron	CTD	PMID:30157460
Armh1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ARMH1 mRNA	CTD	PMID:25181051 more ...
Armh1	Rat	bisphenol A	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of ARMH1 gene	CTD	PMID:31601247
Armh1	Rat	bisphenol A	increases methylation	ISO	ARMH1 (Homo sapiens)	6480464	bisphenol A results in increased methylation of ARMH1 gene	CTD	PMID:31601247
Armh1	Rat	cisplatin	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of ARMH1 mRNA	CTD	PMID:27392435
Armh1	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of ARMH1 mRNA	CTD	PMID:26577399
Armh1	Rat	decabromodiphenyl ether	multiple interactions	EXP		6480464	[Flame Retardants co-treated with pentabromodiphenyl ether co-treated with decabromobiphenyl ether co-treated with hexabromocyclododecane] results in decreased expression of ARMH1 mRNA	CTD	PMID:32207525
Armh1	Rat	dorsomorphin	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of ARMH1 mRNA	CTD	PMID:27188386
Armh1	Rat	fulvestrant	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of ARMH1 gene	CTD	PMID:31601247
Armh1	Rat	nickel atom	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	Nickel results in increased expression of ARMH1 mRNA	CTD	PMID:24768652 and PMID:25583101
Armh1	Rat	p-chloromercuribenzoic acid	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	p-Chloromercuribenzoic Acid results in increased expression of ARMH1 mRNA	CTD	PMID:26272509
Armh1	Rat	p-chloromercuribenzoic acid	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of ARMH1 mRNA	CTD	PMID:27188386
Armh1	Rat	propanal	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	propionaldehyde results in increased expression of ARMH1 mRNA	CTD	PMID:26079696
Armh1	Rat	SB 431542	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of ARMH1 mRNA	CTD	PMID:27188386
Armh1	Rat	sodium arsenate	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of ARMH1 mRNA	CTD	PMID:32525701
Armh1	Rat	sodium arsenite	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of ARMH1 mRNA	CTD	PMID:38568856
Armh1	Rat	sodium arsenite	decreases expression	ISO	ARMH1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of ARMH1 mRNA	CTD	PMID:34032870
Armh1	Rat	sotorasib	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in increased expression of ARMH1 mRNA	CTD	PMID:36139627
Armh1	Rat	sunitinib	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	Sunitinib results in increased expression of ARMH1 mRNA	CTD	PMID:31533062
Armh1	Rat	testosterone	increases expression	ISO	ARMH1 (Homo sapiens)	6480464	Testosterone results in increased expression of ARMH1 mRNA	CTD	PMID:33359661
Armh1	Rat	titanium dioxide	increases expression	ISO	Armh1 (Mus musculus)	6480464	titanium dioxide results in increased expression of ARMH1 mRNA	CTD	PMID:35295148
Armh1	Rat	trametinib	multiple interactions	ISO	ARMH1 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in increased expression of ARMH1 mRNA	CTD	PMID:36139627
Armh1	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of ARMH1 mRNA	CTD	PMID:33387578
Armh1	Rat	triphenyl phosphate	affects expression	ISO	ARMH1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ARMH1 mRNA	CTD	PMID:37042841
Armh1	Rat	valproic acid	decreases methylation	ISO	ARMH1 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of C1ORF228 gene	CTD	PMID:29154799

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh1	Rat	cytosol	located_in	IEA	UniProtKB:Q6PIY5 and ensembl:ENSP00000440524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Armh1	Rat	cytosol	located_in	ISO	ARMH1 (Homo sapiens) and UniProtKB:Q6PIY5-1	1624291		RGD	GO_REF:0000052
Armh1	Rat	plasma membrane	located_in	IEA	UniProtKB:Q6PIY5 and ensembl:ENSP00000440524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Armh1	Rat	plasma membrane	located_in	ISO	ARMH1 (Homo sapiens) and UniProtKB:Q6PIY5-1	1624291		RGD	GO_REF:0000052

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932

Armh1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,919,057 - 135,958,653 (-)	NCBI		GRCr8
mRatBN7.2	5	130,680,955 - 130,722,062 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,682,485 - 130,722,062 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	133,305,037 - 133,345,152 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	135,059,650 - 135,099,750 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	135,082,082 - 135,122,179 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	136,073,056 - 136,112,344 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	136,073,056 - 136,112,344 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,866,869 - 139,905,838 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	137,518,820 - 137,559,821 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	129,203,621 - 129,243,000 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ARMH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	44,674,714 - 44,725,591 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	44,674,692 - 44,725,591 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	45,140,386 - 45,191,263 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	44,913,014 - 44,964,051 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	43,423,283 - 43,474,156 (+)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	43,254,587 - 43,304,797 (+)	NCBI		HuRef
CHM1_1	1	45,256,304 - 45,307,173 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	44,545,660 - 44,596,534 (+)	NCBI		T2T-CHM13v2.0

Armh1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	117,070,523 - 117,109,329 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	117,070,531 - 117,109,322 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	117,213,326 - 117,251,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	117,213,334 - 117,252,125 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,885,938 - 116,924,522 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,713,122 - 116,749,849 (-)	NCBI		MGSCv36	mm8
Celera	4	115,941,735 - 115,981,897 (-)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.43	NCBI

Armh1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	13,498,362 - 13,533,888 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	13,501,662 - 13,552,953 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARMH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	182,083,090 - 182,134,395 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	181,216,203 - 181,275,843 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	43,977,208 - 44,028,404 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	45,343,440 - 45,393,811 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	45,343,447 - 45,393,811 (+)	Ensembl	panpan1.1		panPan2

ARMH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	15,590,451 - 15,640,089 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	15,590,447 - 15,640,321 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	15,711,240 - 15,760,284 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	15,741,642 - 15,791,805 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	15,741,682 - 15,776,888 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	15,543,688 - 15,592,925 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	15,610,489 - 15,660,003 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	15,684,397 - 15,733,703 (-)	NCBI		UU_Cfam_GSD_1.0

Armh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,090,203 - 60,136,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	25,928,532 - 25,961,812 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	25,929,785 - 25,961,594 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	166,592,845 - 166,645,014 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	166,572,968 - 166,645,129 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	153,984,008 - 154,001,679 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	88,062,317 - 88,111,095 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	88,062,336 - 88,093,719 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	28,812,756 - 28,870,113 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armh1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	596,043 - 624,232 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	580,041 - 623,919 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Armh1
348 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	37
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000050195
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128071929	134724733	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	128033842	133011550	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

RH142731

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,721,158 - 130,721,391 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	136,111,441 - 136,111,673	NCBI	Rnor6.0
Rnor_5.0	5	139,904,929 - 139,905,161	UniSTS	Rnor5.0
RGSC_v3.4	5	137,558,918 - 137,559,150	UniSTS	RGSC3.4
Celera	5	129,242,097 - 129,242,329	UniSTS
RH 3.4 Map	5	838.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH136758

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,720,595 - 130,720,778 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	136,110,878 - 136,111,060	NCBI	Rnor6.0
Rnor_5.0	5	139,904,366 - 139,904,548	UniSTS	Rnor5.0
RGSC_v3.4	5	137,558,355 - 137,558,537	UniSTS	RGSC3.4
Celera	5	129,241,538 - 129,241,720	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	4	47	113	42	41	15	16	15	6	155	83	93	45	58	26


RefSeq Transcripts	NM_001126297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC160855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050195 ⟹ ENSRNOP00000040555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,682,485 - 130,722,062 (-)	Ensembl
Rnor_6.0 Ensembl	5	136,073,056 - 136,112,344 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089166 ⟹ ENSRNOP00000074149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,682,487 - 130,707,447 (-)	Ensembl
Rnor_6.0 Ensembl	5	136,073,058 - 136,098,013 (-)	Ensembl

RefSeq Acc Id:

NM_001126297 ⟹ NP_001119769

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,057 - 135,958,626 (-)	NCBI
mRatBN7.2	5	130,682,485 - 130,722,062 (-)	NCBI
Rnor_6.0	5	136,073,056 - 136,112,344 (-)	NCBI
Rnor_5.0	5	139,866,869 - 139,905,838 (-)	NCBI
RGSC_v3.4	5	137,518,820 - 137,559,821 (-)	RGD
Celera	5	129,203,621 - 129,243,000 (-)	RGD

Sequence:

show sequence

GAGTCGCTTCGCGCCTCGGGCGGCACCCACTAGTCGGGTCCTAGCAACCGCGCTCCGCCCCTACTGTCTTTGGGCCCCAGCAATTGGCTGACTCTCTTGATCTTGGATCAAGCATTGGTCAGTGGGGC
AGCGCTCTTGGAGAGTACCCACCCTCCCGTGAAGGTTGATCCACACTTGTCCCGTCCCCTCACCCCAGCCCCCAGTTCTAGAAACTGATTGGACCTTGTGATGTCTTCCTGAAGCTGCGTGGGTGCCC
TTCCCAGGAGCACAGACCCAGTGTCCTCTGGGGAACAGTGGAGTCAATCTCGGGGCTGACTGGCCATGACCTCTATAAAAGAGCAGGCAGCCATCAGCCGGCTTCTAAGTTTTTTGCAAGAATGGGAC
AACGCTGGCAAAAGCCTACGAACCCAGATTCTCACCACCTTCATCGAAACCAACCAAGGCAAGACTGGCCCTGAGTTGGAGCTGGAGTTTTCCCAAGGAGCCAGTTTGTTTCTCATACGAGTGACCAC
CTGGCTTAGAATCATCTATATGACTGGCTTGGATTTAGAAATGATCCTGAGATCCATTGGCATCTTCTTATCTGCTGTGAGCAGCAATCGGTACCTGATAGAATTTCTTGAGATTGGCGGTGTCCTAA
CACTCTTGGAAATACTTGGCCTAGAGAAGATCAAGGAAGAGGACAAAAAGGAATCCATCAAACTACTTCAGATTATTGCAAACACTGGCAGGAAGTACAAGGAGCTCATCTGTGAGAGCTATGGTGTG
AGAGCCATAGCAGAATTTCTGGCAAAGTCTAAATCAGAAGAGACCCAGGAGGAAGTGCAGGTTCTGCTGGATACGTTGGTCCATGGCAATCCCAAGTACCAGAACCAAGTATACAAAGGCCTAATAGC
CCTCCTGCCCTGCGGGTCCCCGAAAGCCCAGCAACTGGCCCTGCAGACTCTCAAGACTGCCCAGTCGATCGTTGGAGCAACACACCCCAGCATCGTGGACTGCGTGCTGATGGTCCTGAGCACAGTGC
ACCTGGAGGTGCAGTATGAAGCCATCGAGCTGATAAAAGACCTGATCCACTACGACGTGCGCTTGCCTCTGCTCAAGGGCCTCATAGCCATGCTCATCCCTCCAGTCAAGGAAACATCCAAACTGCAG
GCCAGGATCTTCAGTGACTCTTCGATTCTCCAGATCACCACCCAGCTGCCTGTGTTCCTGCAGCAGGCTGCGGCTGCCAAGACTATTGGGATCCTGGCACGGAGCGACTTGAACTTGGCGGAGGAGAT
GCTGCACCTGCGCGTGATTCACAGCCTGATGTCGGCCATGGGTAACACTGACCACAGCAATAGCCAGAGGCTGGCCAGCCTCACACTGGAGTACTTCGTGCAGATGTTCCCGTTGGTGGAGGAACACG
TCCGAAACTCCATGGGGGAAGAACTCTACCAGCTCTTCCTCAGCGATGCTGAGATCTTGTATACAAAAATAGATAGCATTCAAGCGGACATCTTGGCAGCCAACAAAGTCAATGTTACCAGAGACAGC
TGCGACCACATCAACAACAGCTGCATCAGCTTCTCCACCAGCTCTGACGCTTCGAATCAGGTGGGAGGCATCAGCGACTTTGAGAAGCTTCATTCAGAATCCAGGGAGTGACAGAGCCCCTGTGGCAA
ACCAGGAAGGCCAAGGTTGTGCCTCGTGGAAGCCTGCCTGTCGGGAGGGTGGCACCGAGAGGACGGTGCCGTTTGGCCCTGGGGAGGAGGCTGAGTATTAGAAAACGCAGTGGGGAAGGGGGAAGCTA
TTTCTGCAGAAGGGTCTAATAAAAGGTCTTGATGTTAC

hide sequence

RefSeq Acc Id:

XM_008764051 ⟹ XP_008762273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,058 - 135,958,653 (-)	NCBI
mRatBN7.2	5	130,680,955 - 130,721,791 (-)	NCBI
Rnor_6.0	5	136,073,056 - 136,112,339 (-)	NCBI

Sequence:

show sequence

GCTTCGCGCCTCGGGCGGCACCCACTAGTCGGGTCCTAGCAACCGCGCTCCGCCCCTACTGTCT
TTGGGCCCCAGCAATTGGCTGACTCTCTTGATCTTGGATCAAGCATTGGTCAGTGGGGCAGCGCTCTTGGAGAGTACCCACCCTCCCGTGAAGCCGCAGTTCCCAGGCTGGAGGCAGAAAAACGAACA
CAACAGCGTTAAGGCGGCGCGTGCCAACCGGTCCTTGCAAACCTGTGGGTTGAGACTCGTTGCCTGGCTGGGAAGGGATCTTCAGGTTGATCCACACTTGTCCCGTCCCCTCACCCCAGCCCCCAGTT
CTAGAAACTGATTGGACCTTGTGATGTCTTCCTGAAGCTGCGTGGGTGCCCTTCCCAGGAGCACAGACCCAGTGTCCTCTGGGGAACAGTGGAGTCAATCTCGGGGCTGACTGGCCATGACCTCTATA
AAAGAGCAGGCAGCCATCAGCCGGCTTCTAAGTTTTTTGCAAGAATGGGACAACGCTGGCAAAAGCCTACGAACCCAGATTCTCACCACCTTCATCGAAACCAACCAAGGCAAGACTGGCCCTGAGTT
GGAGCTGGAGTTTTCCCAAGGAGCCAGTTTGTTTCTCATACGAGTGACCACCTGGCTTAGAATCATCTATATGACTGGCTTGGATTTAGAAATGATCCTGAGATCCATTGGCATCTTCTTATCTGCTG
TGAGCAGCAATCGGTACCTGATAGAATTTCTTGAGATTGGCGGTGTCCTAACACTCTTGGAAATACTTGGCCTAGAGAAGATCAAGGAAGAGGACAAAAAGGAATCCATCAAACTACTTCAGATTATT
GCAAACACTGGCAGGAAGTACAAGGAGCTCATCTGTGAGAGCTATGGTGTGAGAGCCATAGCAGAATTTCTGGCAAAGTCTAAATCAGAAGAGACCCAGGAGGAAGTGCAGGTTCTGCTGGATACGTT
GGTCCATGGCAATCCCAAGTACCAGAACCAAGTATACAAAGGCCTAATAGCCCTCCTGCCCTGCGGGTCCCCGAAAGCCCAGCAACTGGCCCTGCAGACTCTCAAGACTGCCCAGTCGATCGTTGGAG
CAACACACCCCAGCATCGTGGACTGCGTGCTGATGGTCCTGAGCACAGTGCACCTGGAGGTGCAGTATGAAGCCATCGAGCTGATAAAAGACCTGATCCACTACGACGTGCGCTTGCCTCTGCTCAAG
GGCCTCATAGCCATGCTCATCCCTCCAGTCAAGGAAACATCCAAACTGCAGGCCAGGATCTTCAGTGACTCTTCGATTCTCCAGATCACCACCCAGCTGCCTGTGTTCCTGCAGCAGGCTGCGGCTGC
CAAGACTATTGGGATCCTGGCACGGAGCGACTTGAACTTGGCGGAGGAGATGCTGCACCTGCGCGTGATTCACAGCCTGATGTCGGCCATGGGTAACACTGACCACAGCAATAGCCAGAGGCTGGCCA
GCCTCACACTGGAGTACTTCGTGCAGATGTTCCCGTTGGTGGAGGAACACGTCCGAAACTCCATGGGGGAAGAACTCTACCAGCTCTTCCTCAGCGATGCTGAGATCTTGTATACAAAAATAGATAGC
ATTCAAGCGGACATCTTGGCAGCCAACAAAGTCAATGTTACCAGAGCGTTAGACAGCTGCGACCACATCAACAACAGCTGCATCAGCTTCTCCACCAGCTCTGACGCTTCGAATCAGGTGGGAGGCAT
CAGCGACTTTGAGAAGCTTCATTCAGAATCCAGGGAGTGACAGAGCCCCTGTGGCAAACCAGGAAGGCCAAGGTTGTGCCTCGTGGAAGCCTGCCTGTCGGGAGGGTGGCACCGAGAGGACGGTGCCG
TTTGGCCCTGGGGAGGAGGCTGAGTATTAGAAAACGCAGTGGGGAAGGGGGAAGCTATTTCTGCAGAAGGGTCTAATAAAAGGTCTTGATGTTAC

hide sequence

RefSeq Acc Id:

XM_039110596 ⟹ XP_038966524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,058 - 135,958,355 (-)	NCBI
mRatBN7.2	5	130,680,955 - 130,721,791 (-)	NCBI

RefSeq Acc Id:

XM_039110597 ⟹ XP_038966525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,058 - 135,958,627 (-)	NCBI
mRatBN7.2	5	130,680,955 - 130,721,791 (-)	NCBI

RefSeq Acc Id:

XM_063288243 ⟹ XP_063144313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,058 - 135,958,631 (-)	NCBI

RefSeq Acc Id:

XM_063288244 ⟹ XP_063144314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,919,058 - 135,946,439 (-)	NCBI


Protein RefSeqs	NP_001119769	(Get FASTA)	NCBI Sequence Viewer
	XP_008762273	(Get FASTA)	NCBI Sequence Viewer
	XP_038966524	(Get FASTA)	NCBI Sequence Viewer
	XP_038966525	(Get FASTA)	NCBI Sequence Viewer
	XP_063144313	(Get FASTA)	NCBI Sequence Viewer
	XP_063144314	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60855	(Get FASTA)	NCBI Sequence Viewer
	EDL90221	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040555
	ENSRNOP00000040555.3
	ENSRNOP00000074149
	ENSRNOP00000074149.1

RefSeq Acc Id:

NP_001119769 ⟸ NM_001126297

- UniProtKB:

D4A9P2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSIKEQAAISRLLSFLQEWDNAGKSLRTQILTTFIETNQGKTGPELELEFSQGASLFLIRVTTWLRIIYMTGLDLEMILRSIGIFLSAVSSNRYLIEFLEIGGVLTLLEILGLEKIKEEDKKESIKL
LQIIANTGRKYKELICESYGVRAIAEFLAKSKSEETQEEVQVLLDTLVHGNPKYQNQVYKGLIALLPCGSPKAQQLALQTLKTAQSIVGATHPSIVDCVLMVLSTVHLEVQYEAIELIKDLIHYDVRL
PLLKGLIAMLIPPVKETSKLQARIFSDSSILQITTQLPVFLQQAAAAKTIGILARSDLNLAEEMLHLRVIHSLMSAMGNTDHSNSQRLASLTLEYFVQMFPLVEEHVRNSMGEELYQLFLSDAEILYT
KIDSIQADILAANKVNVTRDSCDHINNSCISFSTSSDASNQVGGISDFEKLHSESRE

hide sequence

RefSeq Acc Id:

XP_008762273 ⟸ XM_008764051

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTSIKEQAAISRLLSFLQEWDNAGKSLRTQILTTFIETNQGKTGPELELEFSQGASLFLIRVTT
WLRIIYMTGLDLEMILRSIGIFLSAVSSNRYLIEFLEIGGVLTLLEILGLEKIKEEDKKESIKLLQIIANTGRKYKELICESYGVRAIAEFLAKSKSEETQEEVQVLLDTLVHGNPKYQNQVYKGLIA
LLPCGSPKAQQLALQTLKTAQSIVGATHPSIVDCVLMVLSTVHLEVQYEAIELIKDLIHYDVRLPLLKGLIAMLIPPVKETSKLQARIFSDSSILQITTQLPVFLQQAAAAKTIGILARSDLNLAEEM
LHLRVIHSLMSAMGNTDHSNSQRLASLTLEYFVQMFPLVEEHVRNSMGEELYQLFLSDAEILYTKIDSIQADILAANKVNVTRALDSCDHINNSCISFSTSSDASNQVGGISDFEKLHSESRE

hide sequence

Ensembl Acc Id:

ENSRNOP00000074149 ⟸ ENSRNOT00000089166

Ensembl Acc Id:

ENSRNOP00000040555 ⟸ ENSRNOT00000050195

RefSeq Acc Id:	XP_038966525 ⟸ XM_039110597
- Peptide Label:	isoform X1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9P2-F1-model_v2	AlphaFold	D4A9P2	1-441	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-40198	BioCyc
Ensembl Genes	ENSRNOG00000031494	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050195	ENTREZGENE
	ENSRNOT00000050195.5	UniProtKB/TrEMBL
	ENSRNOT00000089166	ENTREZGENE
	ENSRNOT00000089166.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8364945	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	DUF5578	UniProtKB/TrEMBL
KEGG Report	rno:500531	UniProtKB/TrEMBL
MGC_CLONE	MGC:187608	IMAGE-MGC_LOAD
NCBI Gene	500531	ENTREZGENE
PANTHER	ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR34258	UniProtKB/TrEMBL
Pfam	DUF5578	UniProtKB/TrEMBL
PhenoGen	Armh1	PhenoGen
RatGTEx	ENSRNOG00000031494	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	B1H243_RAT	UniProtKB/TrEMBL
	D4A9P2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-20	Armh1	armadillo-like helical domain containing 1	RGD1563714	RGD1563714	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1563714	RGD1563714	RGD1563714_predicted	RGD1563714 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1563714_predicted	RGD1563714 (predicted)	LOC500531	similar to hypothetical LOC339541	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500531	similar to hypothetical LOC339541			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar