Scmh1 (Scm polycomb group protein homolog 1)

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Gene: Scmh1 (Scm polycomb group protein homolog 1) Rattus norvegicus

Analyze

Symbol:

Scmh1

Name:

Scm polycomb group protein homolog 1

RGD ID:

1305788

Description:

Predicted to have chromatin binding activity and histone binding activity. Predicted to be involved in several processes, including chromatin remodeling; negative regulation of transcription, DNA-templated; and spermatogenesis. Predicted to localize to chromocenter and nucleus. Orthologous to human SCMH1 (Scm polycomb group protein homolog 1); INTERACTS WITH acetamide; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC362581; polycomb protein SCMH1; sex comb on midleg 1; sex comb on midleg homolog 1; sex comb on midleg homolog 1 ; sex comb on midleg homolog 1 (Drosophila)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	133,991,167 - 134,115,893 (+)	NCBI
Rnor_6.0 Ensembl	5	139,385,429 - 139,466,081 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	139,379,256 - 139,466,805 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	143,162,751 - 143,249,837 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	141,039,645 - 141,127,334 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	141,006,241 - 141,132,777 (+)	NCBI
Celera	5	132,585,181 - 132,671,540 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (EXP)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diuron (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

methapyrilene (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

quercetin (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

triptonide (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (ISO)

chromatin remodeling (ISO)

negative regulation of transcription, DNA-templated (IBA)

spermatogenesis (ISO)

Cellular Component

chromocenter (ISO)

nucleus (IBA,ISO)

Molecular Function

chromatin binding (IBA)

histone binding (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	RGD automated data pipeline
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17215307	PMID:20515739

Genomics

Comparative Map Data

Scmh1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	133,991,167 - 134,115,893 (+)	NCBI
Rnor_6.0 Ensembl	5	139,385,429 - 139,466,081 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	139,379,256 - 139,466,805 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	143,162,751 - 143,249,837 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	141,039,645 - 141,127,334 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	141,006,241 - 141,132,777 (+)	NCBI
Celera	5	132,585,181 - 132,671,540 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

SCMH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	41,027,200 - 41,242,154 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	41,027,199 - 41,242,306 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	41,492,871 - 41,707,978 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	41,265,461 - 41,480,375 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	41,161,969 - 41,376,881	NCBI
Celera	1	39,775,792 - 39,990,782 (-)	NCBI
Cytogenetic Map	1	p34.2	NCBI
HuRef	1	39,609,958 - 39,825,006 (-)	NCBI		HuRef
CHM1_1	1	41,608,779 - 41,823,761 (-)	NCBI		CHM1_1

Scmh1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	120,262,347 - 120,387,397 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	120,262,478 - 120,387,383 (+)	Ensembl
GRCm38	4	120,405,150 - 120,530,200 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	120,405,281 - 120,530,186 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	120,077,886 - 120,202,804 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	119,903,044 - 120,027,590 (+)	NCBI			mm8
Celera	4	119,122,290 - 119,247,186 (+)	NCBI		Celera
Cytogenetic Map	4	D2.1	NCBI
cM Map	4	56.52	NCBI

Scmh1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955537	824,828 - 937,324 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955537	819,209 - 971,297 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCMH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	41,639,127 - 41,809,094 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	41,639,127 - 41,776,261 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	40,323,101 - 40,540,236 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SCMH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	1,917,503 - 2,056,325 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	1,917,509 - 2,058,904 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	2,138,061 - 2,315,655 (+)	NCBI
ROS_Cfam_1.0	15	1,969,172 - 2,146,826 (+)	NCBI
UMICH_Zoey_3.1	15	1,874,915 - 2,052,478 (+)	NCBI
UNSW_CanFamBas_1.0	15	1,934,876 - 2,112,665 (+)	NCBI
UU_Cfam_GSD_1.0	15	1,950,439 - 2,128,033 (+)	NCBI

Scmh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	56,818,076 - 56,959,576 (-)	NCBI
SpeTri2.0	NW_004936474	22,648,156 - 22,784,399 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCMH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	169,999,818 - 170,189,354 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	169,999,763 - 170,189,357 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	157,208,869 - 157,236,957 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCMH1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	91,724,068 - 91,890,131 (+)	NCBI
ChlSab1.1 Ensembl	20	91,751,977 - 91,889,164 (+)	Ensembl

Scmh1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624892	435,145 - 621,203 (-)	NCBI

Position Markers

AA924088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	139,466,498 - 139,466,711	NCBI	Rnor6.0
Rnor_5.0	5	143,249,753 - 143,249,966	UniSTS	Rnor5.0
RGSC_v3.4	5	141,127,250 - 141,127,463	UniSTS	RGSC3.4
Celera	5	132,671,456 - 132,671,669	UniSTS
RH 3.4 Map	5	901.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	71552569	157225114	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	84963058	173504662	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	97921932	149030144	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	100723739	153577831	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	101265591	141912026	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	102945579	154732228	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	107119214	152119214	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111278451	156278451	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112279412	157279412	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112279412	157279412	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112279412	157279412	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112279412	157279412	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112279412	157279412	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114140832	159140832	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114140832	159140832	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116767924	161767924	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116767924	161767924	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116767924	161767924	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116767924	161767924	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125455818	149568944	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125455818	157225114	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	128687766	173687766	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130531300	145726262	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	131077716	173707219	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132551937	173707219	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133351969	140120264	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133943857	173707219	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133943857	173707219	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	134197905	173707219	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134502121	149030144	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134502140	157212422	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	134712342	173707219	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	134712342	173707219	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	136354114	173707219	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136640731	173707219	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138154677	172402610	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	48
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000045954
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	31	16	17	16		2	74	24	41	11
Low		6	26	25	2	25	8	9		11			8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC131847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000045954 ⟹ ENSRNOP00000051099

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	139,394,794 - 139,465,883 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078622 ⟹ ENSRNOP00000072942

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	139,385,429 - 139,466,081 (+)	Ensembl

RefSeq Acc Id:

NM_001109669 ⟹ NP_001103139

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	134,029,217 - 134,115,670 (+)	NCBI
Rnor_6.0	5	139,379,737 - 139,466,582 (+)	NCBI
Rnor_5.0	5	143,162,751 - 143,249,837 (+)	NCBI
RGSC_v3.4	5	141,039,645 - 141,127,334 (+)	RGD
Celera	5	132,585,181 - 132,671,540 (+)	RGD

Sequence:

show sequence

ATGGAGAGATTAATACACAGAGAACCTAACTTGTCAGAGTCAGAGCAAGGCAGAGGTGGATCCA
GGAATAAGTCCTAAACTTCGTCACTCCTTGCTTAGTTTTAGTTCATTGACTATGCAGCCTAGTG
ACTGGAATGATGTGAAAAAACCTAAGTATGGTCACTTGTCAGAATCTGCATCTCAATACCAAGA
GCCTGTGGACATCCTGGAGCTAGCATCTAGTGCTTTTTGTATGGGCCAAAGGGGCCTTGTGCTG
CTCCACCTCAGAGGAAACTTCAAGAAATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGAGTCT
CTGGGACCTTCCCTGCTCCATCATGGGGTCACCTCTAGGTCATTTTACCTGGGACAAATACCTA
AAAGAAACAAGTTCAGTCCCAGCACCTGTCCATTGCTTCAAGCAGTCCTACACACCTCCAAGCA
ATGAGTTCAAGATTAGCATGAAATTGGAAGCACAGGACCCCAGGAACACCACGTCCACCTGTAT
TGCCACAGTAGTTGGACTGACAGGTGCCCGACTCCGTCTGCGCCTTGATGGCAGTGACAACAAG
AATGACTTCTGGAGACTGGTTGACTCCTCCGAAATCCAACCAATTGGAAACTGTGAGAAGAATG
GCGGTATGCTGCAGCCACCTCTAGGATTTCGGCTGAATGCCTCCTCTTGGCCCATGTTCCTTTT
GAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAAGATTTTCCATAAGGAGCCACCATCACCT
TCCCACAACTTCTTCAAAATGGGAATGAAGTTGGAAGCTGTGGACAGAAAGAACCCTCATTTCA
TCTGCCCAGCCACTATTGGAGAGGTCCGAGGCTCAGAGGTGCTGGTCACCTTTGATGGGTGGCG
AGGCGCATTTGACTACTGGTGCCGCTTTGACTCCCGGGACATCTTTCCTGTGGGCTGGTGTTCT
TTGACTGGAGATAACCTGCAGCCGCCTGGCACCAAAGTTGTGATTCCAAAGAATCCTTCCCCTT
CGTCTGATGTGAGCACTGAGAAGCCCAGCATCAACAGCACCAAAACTGTCTTGGAGCCTCAGCC
AGGGCAGAGAGGGCGCAAACCAGGAAAGAAGCGGGGCCGAACGCCCAAGATCCTTATTCCCCAT
CCCACCTCTACCCCATCCAAGTCAGCTGAACCTTTGAAATTTCCAAAGAAGAGAGGCCCCAAGC
CTGGCAGTAAGAGGAGACCTCGGACTTTGCTGAGCCCACCACCCACCTCACCAACAACCAGCAC
TCCTGAACCGGACACCAGCACTGTTCCCCAAGATGCTGCCACCATCCCAAGTTCAGCCATGCAG
GCCCCCACAGTTTGTATCTACTTGAACAAGAGCGGCAGCACGGGCCCCCACTTGGATAAAAAGA
AGATCCAACAACTCCCTGACCATTTTGGGCCAGCCCGTGCCTCTGTGGTGTTGCAGCAGGCTGT
CCAGGCTTGCATTGACTGTGCTTATCACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGCCAT
GGCGGTGAAGTCATCTCAGCCGTGTTCGACCGGGAACAGCACACACTCAACCTCCCAGCCGTCA
ACAGCATCACCTATGTCCTCCGTTTCCTGGAGAAGCTCTGCCACAACCTTCGGAGTGACAATCT
GTTTGGCAACCAGCCCTTTACACAGACTCACGTGTCACTCACTGCCACAGAGTACAGCCACGGC
CACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGGGCAATAGCCTGACGAGGTCCTTGGAGA
CACACTCAGACCTGATGGACTCTGCCTTGAAGCCTGCCAACCTCGTCAGCACGTCCCAGACCCT
CCGGACTCCTGGCTATCGGCCCTTGCTTCCCTCCTGTGGCCTTCCATTGAGCACTGTCTCTGCT
GTGCGCAGGCTCTGCTCTCGGGGAGTGTTAAAAGGAACAAGGGAAAGAAGGGATGTGGAATCAT
TTTGGAAACTAAATCATTCCCCAGGGTCAGATCGACACCTGGAGAGCCGAGATCCCCCTCGCCT
AAGTGGCCGGGACCCCTCCTCATGGACAGTGGAGGATGTGATGCAGTTTGTCCGGGAGGCTGAT
CCTCAGCTTGGATCCCATGCTGACCTCTTCCGAAAACATGAAATCGATGGCAAGGCCCTGCTCC
TGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCCCTCAAGCTCTC
CTTTCACATTGACCGGCTGAAGCAGGGCAAGTTCTGAACAGGAGGCACTCTTCTCCCAGGAAGC
CGCCAGCCAGCTCCCAGGCACCGTAGTAGGGCTCTGGGTGACCTCAGGACTCTAGGAGGCTGGA
AAGCCACCACTGCTACCCTTCCTGCCCTGATGCGTCCTTCCATGAAGGACTGAGGAGGGAACAG
TGGGTAGGGCTGGTGCTGCTCTTCCCATTAGCCTGCTGTGGCTCCCGGGCCCTTCTATTTATTT
CTCAAGGCTAGCCAGCCTCTCACCACAAGTTTAGACTGAGCACCTTTCAAGAGATGAGGAAGAC
GCCAACCCTAGGACCTTGAAAGGCCCTGGTACCCAGGCCCCTTACCACCTCCTGGGCTTGGCAT
AGTGTCCCATGGCCCCCAGCTCATGCCTTCTCACTGGATCCCCAGACTCTGAACTTATGGTGCA
GACCTTTTTAAAGAAATCTTTTCTTATTGCTAATTTATTGCTTCTCGCATTTGGACTTAATGCT
TCTCTTGCACCAAACATTTTTTTTGGAAGAGGGAGACCATCCTCTGTGGTCCAGAGAGGGCCTC
TCCAGAGAAGCGTGGCCCTATTTCAGAAGACACTGCCCTAGGGCCCTTCTTCTCTGGAATGGAC
AAAGTATATGGCTCACTGAGCATAAGGTGAAGGTCCCTCTTCCTACACTGGGTCCTCTGTAGCC
CCAGCCTTCATCTCTGATGGAGTTTTCCCCTC

hide sequence

RefSeq Acc Id:

XM_008764027 ⟹ XP_008762249

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	139,379,257 - 139,466,805 (+)	NCBI

Sequence:

show sequence

TAAACCAAACCAAAAACTTTAAAAAATATCAAAATTTTTATATGCTATATATCCGCAATTTTCA
ATACAGTGGCCACTCTATCAGTGTGATTTCATTTTATAGTAATTACCACCTGCTAAAACCTATC
TCCAAATATGTTCAAATCGTAGGGCTAAGGTTTCAAAATTCATAATCCTTATTAATAGGTTTTT
GTGACTTTTGGATTTTCTGGCTTTAACTGGTTAGTTGGAAGCTATGTTTATTTTCAATATTTGC
ATAGAAACAAATATAAAAATATTTGTATTTATTTCTATAAGTGTAAAGAGCTCAATTGTACCTG
TTGTATTGTTGTAGGGTACCTTCTAATTCCGAGATATTCTAATAGCAAAAAATATGTACTGATA
TACATTTTTCTTAACAGTGCAGCCTAGTATTAGTACTTAGAGGTCTCACTGTAGGATTTTAACC
ATTCTCTTTCTGTCCATTCCCTTTCTTTACAGATGGAGAGATTAATACACAGAGAACCTAACTT
GTCAGAGTCAGAGCAAGGCAGAGGTGGATCCAGGAATAAGTCCTAAACTTCGTCACTCCTTGCT
TAGTTTTAGTTCATTGACTATGCAGCCTAGTGAACTCCTATGCTGCTCCTGCAGGAGTCTCCTG
GCAGTTACTCTGATCAGTGGGGTGGCTTTGCAGCCTACTTGCTGCAGGAACAGGCAAGGTCCAT
TCACAGACCTTTGCTGGTATGTACAGAAAGCACCCTCTGTCGACTGGAATGATGTGAAAAAACC
TAAGTATGGTCACTTGTCAGAATCTGCATCTCAATACCAAGAGCCTGTGGACATCCTGGAGCTA
GGTCATTTTACCTGGGACAAATACCTAAAAGAAACAAGTTCAGTCCCAGCACCTGTCCATTGCT
TCAAGCAGTCCTACACACCTCCAAGCAATGAGTTCAAGATTAGCATGAAATTGGAAGCACAGGA
CCCCAGGAACACCACGTCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGACTCCGT
CTGCGCCTTGATGGCAGTGACAACAAGAATGACTTCTGGAGACTGGTTGACTCCTCCGAAATCC
AACCAATTGGAAACTGTGAGAAGAATGGCGGTATGCTGCAGCCACCTCTAGGATTTCGGCTGAA
TGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAAG
ATTTTCCATAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAAGTTGGAAG
CTGTGGACAGAAAGAACCCTCATTTCATCTGCCCAGCCACTATTGGAGAGGTCCGAGGCTCAGA
GGTGCTGGTCACCTTTGATGGGTGGCGAGGCGCATTTGACTACTGGTGCCGCTTTGACTCCCGG
GACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGATAACCTGCAGCCGCCTGGCACCAAAG
TTGTGATTCCAAAGAATCCTTCCCCTTCGTCTGATGTGAGCACTGAGAAGCCCAGCATCAACAG
CACCAAAACTGTCTTGGAGCCTCAGCCAGGGCAGAGAGGGCGCAAACCAGGAAAGAAGCGGGGC
CGAACGCCCAAGATCCTTATTCCCCATCCCACCTCTACCCCATCCAAGTCAGCTGAACCTTTGA
AATTTCCAAAGAAGAGAGGCCCCAAGCCTGGCAGTAAGAGGAGACCTCGGACTTTGCTGAGCCC
ACCACCCACCTCACCAACAACCAGCACTCCTGAACCGGACACCAGCACTGTTCCCCAAGATGCT
GCCACCATCCCAAGTTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAACAAGAGCGGCA
GCACGGGCCCCCACTTGGATAAAAAGAAGATCCAACAACTCCCTGACCATTTTGGGCCAGCCCG
TGCCTCTGTGGTGTTGCAGCAGGCTGTCCAGGCTTGCATTGACTGTGCTTATCACCAGAAAACT
GTCTTCAGCTTCCTCAAACAGGGCCATGGCGGTGAAGTCATCTCAGCCGTGTTCGACCGGGAAC
AGCACACACTCAACCTCCCAGCCGTCAACAGCATCACCTATGTCCTCCGTTTCCTGGAGAAGCT
CTGCCACAACCTTCGGAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACGTGTCA
CTCACTGCCACAGAGTACAGCCACGGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGG
GCAATAGCCTGACGAGGTCCTTGGAGACACACTCAGACCTGATGGACTCTGCCTTGAAGCCTGC
CAACCTCGTCAGCACGTCCCAGACCCTCCGGACTCCTGGCTATCGGCCCTTGCTTCCCTCCTGT
GGCCTTCCATTGAGCACTGTCTCTGCTGTGCGCAGGCTCTGCTCTCGGGGAGTGTTAAAAGGAA
CAAGGGAAAGAAGGGATGTGGAATCATTTTGGAAACTAAATCATTCCCCAGGGTCAGATCGACA
CCTGGAGAGCCGAGATCCCCCTCGCCTAAGTGGCCGGGACCCCTCCTCATGGACAGTGGAGGAT
GTGATGCAGTTTGTCCGGGAGGCTGATCCTCAGCTTGGATCCCATGCTGACCTCTTCCGAAAAC
ATGAAATCGATGGCAAGGCCCTGCTCCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCT
GAAGCTGGGGCCTGCCCTCAAGCTCTCCTTTCACATTGACCGGCTGAAGCAGGGCAAGTTCTGA
ACAGGAGGCACTCTTCTCCCAGGAAGCCGCCAGCCAGCTCCCAGGCACCGTAGTAGGGCTCTGG
GTGACCTCAGGACTCTAGGAGGCTGGAAAGCCACCACTGCTACCCTTCCTGCCCTGATGCGTCC
TTCCATGAAGGACTGAGGAGGGAACAGTGGGTAGGGCTGGTGCTGCTCTTCCCATTAGCCTGCT
GTGGCTCCCGGGCCCTTCTATTTATTTCTCAAGGCTAGCCAGCCTCTCACCACAAGTTTAGACT
GAGCACCTTTCAAGAGATGAGGAAGACGCCAACCCTAGGACCTTGAAAGGCCCTGGTACCCAGG
CCCCTTACCACCTCCTGGGCTTGGCATAGTGTCCCATGGCCCCCAGCTCATGCCTTCTCACTGG
ATCCCCAGACTCTGAACTTATGGTGCAGACCTTTTTAAAGAAATCTTTTCTTATTGCTAATTTA
TTGCTTCTCGCATTTGGACTTAATGCTTCTCTTGCACCAAACATTTTTTTTGGAAGAGGGAGAC
CATCCTCTGTGGTCCAGAGAGGGCCTCTCCAGAGAAGCGTGGCCCTATTTCAGAAGACACTGCC
CTAGGGCCCTTCTTCTCTGGAATGGACAAAGTATATGGCTCACTGAGCATAAGGTGAAGGTCCC
TCTTCCTACACTGGGTCCTCTGTAGCCCCAGCCTTCATCTCTGATGGAGTTTTCCCCTCACCCT
GCCCACAGCTCCCTGCCCTGGTCAGAATTGCTGCAAAAGATGGGGCCTGATGCTATTAGGTCAC
GGGGCCCCAATGGTGGGATGGAGGACCTCAAGGCTGGAGGTTGTCCTCGCTCCTGTACTTCCTC
CTAAGCAAGTCAGCAGCACTGCTGCCCCCACTGCCATCTGAACTATTTTATGTCAGTTTGTTTA
TAAATAAAGACCAATACAAATGCCTA

hide sequence

RefSeq Acc Id:

XM_008764028 ⟹ XP_008762250

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	139,379,256 - 139,466,805 (+)	NCBI

Sequence:

show sequence

ATAAACCAAACCAAAAACTTTAAAAAATATCAAAATTTTTATATGCTATATATCCGCAATTTTC
AATACAGTGGCCACTCTATCAGTGTGATTTCATTTTATAGTAATTACCACCTGCTAAAACCTAT
CTCCAAATATGTTCAAATCGTAGGGCTAAGGTTTCAAAATTCATAATCCTTATTAATAGGTTTT
TGTGACTTTTGGATTTTCTGGCTTTAACTGGTTAGTTGGAAGCTATGTTTATTTTCAATATTTG
CATAGAAACAAATATAAAAATATTTGTATTTATTTCTATAAGTGTAAAGAGCTCAATTGTACCT
GTTGTATTGTTGTAGGGTACCTTCTAATTCCGAGATATTCTAATAGCAAAAAATATGTACTGAT
ATACATTTTTCTTAACAGTGCAGCCTAGTATTAGTACTTAGAGGTCTCACTGTAGGATTTTAAC
CATTCTCTTTCTGTCCATTCCCTTTCTTTACAGATGGAGAGATTAATACACAGAGAACCTAACT
TGTCAGAGTCAGAGCAAGGCAGAGGTGGATCCAGGAATAAGTCCTAAACTTCGTCACTCCTTGC
TTAGTTTTAGTTCATTGACTATGCAGCCTAGTGAACTCCTATGCTGCTCCTGCAGGAGTCTCCT
GGCAGTTACTCTGATCAGTGGGGTGGCTTTGCAGCCTACTTGCTGCAGGAACAGGCAAGGTCCA
TTCACAGACCTTTGCTGGTATGTACAGAAAGCACCCTCTGTCGACTGGAATGATGTGAAAAAAC
CTAAGTATGGTCACTTGTCAGAATCTGCATCTCAATACCAAGAGCCTGTGGACATCCTGGAGCT
AGGTCATTTTACCTGGGACAAATACCTAAAAGAAACAAGTTCAGTCCCAGCACCTGTCCATTGC
TTCAAGCAGTCCTACACACCTCCAAGCAATGAGTTCAAGATTAGCATGAAATTGGAAGCACAGG
ACCCCAGGAACACCACGTCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGACTCCG
TCTGCGCCTTGATGGCAGTGACAACAAGAATGACTTCTGGAGACTGGTTGACTCCTCCGAAATC
CAACCAATTGGAAACTGTGAGAAGAATGGCGGTATGCTGCAGCCACCTCTAGGATTTCGGCTGA
ATGCCTCCTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAA
GATTTTCCATAAGGAGCCACCATCACCTTCCCACAACTTCTTCAAAATGGGAATGAAGTTGGAA
GCTGTGGACAGAAAGAACCCTCATTTCATCTGCCCAGCCACTATTGGAGAGGTCCGAGGCTCAG
AGGTGCTGGTCACCTTTGATGGGTGGCGAGGCGCATTTGACTACTGGTGCCGCTTTGACTCCCG
GGACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGATAACCTGCAGCCGCCTGGCACCAAA
GTTGTGATTCCAAAGAATCCTTCCCCTTCGTCTGATGTGAGCACTGAGAAGCCCAGCATCAACA
GCACCAAAACTGTCTTGGAGCCTCAGCCAGGGCAGAGAGGGCGCAAACCAGGAAAGAAGCGGGG
CCGAACGCCCAAGATCCTTATTCCCCATCCCACCTCTACCCCATCCAAGTCAGCTGAACCTTTG
AAATTTCCAAAGAAGAGAGGCCCCAAGCCTGGCAGTAAGAGGAGACCTCGGACTTTGCTGAGCC
CACCACCCACCTCACCAACAACCAGCACTCCTGAACCGGACACCAGCACTGTTCCCCAAGATGC
TGCCACCATCCCAAGTTCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAACAAGAGCGGC
AGCACGGGCCCCCACTTGGATAAAAAGAAGATCCAACAACTCCCTGACCATTTTGGGCCAGCCC
GTGCCTCTGTGGTGTTGCAGCAGGCTGTCCAGGCTTGCATTGACTGTGCTTATCACCAGAAAAC
TGTCTTCAGCTTCCTCAAACAGGGCCATGGCGGTGAAGTCATCTCAGCCGTGTTCGACCGGGAA
CAGCACACACTCAACCTCCCAGCCGTCAACAGCATCACCTATGTCCTCCGTTTCCTGGAGAAGC
TCTGCCACAACCTTCGGAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACGTGTC
ACTCACTGCCACAGAGTACAGCCACGGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTG
GGCAATAGCCTGACGAGGTCCTTGGAGACACACTCAGACCTGATGGACTCTGCCTTGAAGCCTG
CCAACCTCGTCAGCACGTCCCAGACCCTCCGGACTCCTGGCTATCGGCCCTTGCTTCCCTCCTG
TGGCCTTCCATTGAGCACTGTCTCTGCTGTGCGCAGGCTCTGCTCTCGGGGGTCAGATCGACAC
CTGGAGAGCCGAGATCCCCCTCGCCTAAGTGGCCGGGACCCCTCCTCATGGACAGTGGAGGATG
TGATGCAGTTTGTCCGGGAGGCTGATCCTCAGCTTGGATCCCATGCTGACCTCTTCCGAAAACA
TGAAATCGATGGCAAGGCCCTGCTCCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTG
AAGCTGGGGCCTGCCCTCAAGCTCTCCTTTCACATTGACCGGCTGAAGCAGGGCAAGTTCTGAA
CAGGAGGCACTCTTCTCCCAGGAAGCCGCCAGCCAGCTCCCAGGCACCGTAGTAGGGCTCTGGG
TGACCTCAGGACTCTAGGAGGCTGGAAAGCCACCACTGCTACCCTTCCTGCCCTGATGCGTCCT
TCCATGAAGGACTGAGGAGGGAACAGTGGGTAGGGCTGGTGCTGCTCTTCCCATTAGCCTGCTG
TGGCTCCCGGGCCCTTCTATTTATTTCTCAAGGCTAGCCAGCCTCTCACCACAAGTTTAGACTG
AGCACCTTTCAAGAGATGAGGAAGACGCCAACCCTAGGACCTTGAAAGGCCCTGGTACCCAGGC
CCCTTACCACCTCCTGGGCTTGGCATAGTGTCCCATGGCCCCCAGCTCATGCCTTCTCACTGGA
TCCCCAGACTCTGAACTTATGGTGCAGACCTTTTTAAAGAAATCTTTTCTTATTGCTAATTTAT
TGCTTCTCGCATTTGGACTTAATGCTTCTCTTGCACCAAACATTTTTTTTGGAAGAGGGAGACC
ATCCTCTGTGGTCCAGAGAGGGCCTCTCCAGAGAAGCGTGGCCCTATTTCAGAAGACACTGCCC
TAGGGCCCTTCTTCTCTGGAATGGACAAAGTATATGGCTCACTGAGCATAAGGTGAAGGTCCCT
CTTCCTACACTGGGTCCTCTGTAGCCCCAGCCTTCATCTCTGATGGAGTTTTCCCCTCACCCTG
CCCACAGCTCCCTGCCCTGGTCAGAATTGCTGCAAAAGATGGGGCCTGATGCTATTAGGTCACG
GGGCCCCAATGGTGGGATGGAGGACCTCAAGGCTGGAGGTTGTCCTCGCTCCTGTACTTCCTCC
TAAGCAAGTCAGCAGCACTGCTGCCCCCACTGCCATCTGAACTATTTTATGTCAGTTTGTTTAT
AAATAAAGACCAATACAAATGCCTA

hide sequence

RefSeq Acc Id:

XM_017593495 ⟹ XP_017448984

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	139,386,097 - 139,466,805 (+)	NCBI

Sequence:

show sequence

TGCGCTCGCTAGGCAAGCGCTCTACCACTGAGCTAAGTCCCCAACCCCGCCTCTGCAGTTATTA
ATAAGCCCTTTTAAACTGAGATAGTTGTAGTAGTTACATTTTGAAGCCCCCATTTAGCTGCAGA
ACTTTACCTTTCTATCGTTCTGTTTCAGCCTGTTACCTAGTGACCCATGGTTAACATTTGTTTT
CTTTAATAGAGCCTGTGGACATCCTGGAGCTAGGTAAGATTGTTTCTCTTGCTGTTCAATAAGG
GGTAACTTATGAGACCAGGGACTTGATTGTAAGCAGTTTTAATCCACTAGGAAAAGAACTCCAT
GAGTCTTTGTTTCATAATCCAGGAATCACTGTTTGCCTAATTGGCATGTAAATAATTTAGGAGT
CATATCAAGTCCTACTTATCAGGAGGCTACAGACCAAGATAGCAAAAAGGGAAGGAGTGTGTAG
TTACTTACATAGCACACAGCTAAGACAGGAAACCAAAACAAACTGGAAGCAGATCCTCAGTCTA
CCAGTCCACACTAAAGCAAACCTCCATTGCTCATAGTACATTTAGTGCAATTTTTCTAAAGGAA
ATTATTAATAGGGTATGTTGAACCAAAATTAAACTCTTTTTAAAAATAAACTTTCATTTGTAAA
CTACAGAAAAAAACAGATACATCTGTTATAGTAACAAGTCAGACTGATACTGCATTTAGTTTTT
ATTTTGCATAGTATATTTCAGGACTAAGATTTGAGGAATAAAATTAATGCTTAAGATTCTCAGT
TAGCTTTTAAGGTTTCTACATAAACACCAGTCAGTTTCTTAGGGTCCTGTGATGTCCTGTGTCC
CACATAAGCGTTGATATTTACTCAAGTATTTTGATATATTTTGTTACTATAATTCTATGTGTTC
AGCAGTATTATAGTGATTATCCATTCTCTTCTTGTCTTTCCTTCCTGTAAGATATTTTTTTTTC
TGTCAATCCTGATGTAGAAAACAGCAACTAGAGGAGTAGAGGAGGAGTCCAGCAGAATTCCCCG
GGTTGTTGAGAGCTGGCTCTGCCATGTAGCCACTTTGTGACTCTGGTCCTTAGTTTTAGCATTA
GTTAAGTGGGAATAATAACCTGTCTTGTCCGAGTCTCAGGACTGGAAGATCACCTGAGCTAGTG
AATGTGAACGTCATAGCCTGTTCCTTTACACTGGAGAATTGTAATGCGTTTCCTTCTTCTCAGA
AGCTGAGCTCACACTTTAAGTACAATCTGACATTCTTGGAAATGAAGCATTATGATCAAATGAG
TGAAGTGAAATGATGAAGGGCAAAGTACCTGAGATTTGGTAAACAAATAATAGATAGGCCTTGA
TTCTTTAGATTTTTCCTCAAGCGTTATGGCACTAATATGTAAGTAAGAAAACCATGAGCATGGA
GTTGGACAGGCTTGACTCAATTCCTCTTCTCTACTCCAAGCAAATTAATCTTTCTGACATACTC
CCTCATCTTTAAAATGAACATGAAACAAAGATGCTGAGCTAATGTGATGTGAGCAGGCCAAGGG
AGCACAGTCATAGCTGCTGCTGGTTTTGGTCTTGTTGCTAATTTCAGTCATGGTAACAGTTGTA
GCTCAGCTCACTACCTGGGCGTGTTGTAAACTGCATGTTTACAGTGAGTTTTGTTACACATGGT
ACATGAAGAACATCAGTTGGCAAAGGAGTTTATAACTTGGAAGTACGATTTTCCTTAGAGTGAT
TGGTGACACAGATGTATTCTCTGATATACATTAAGGCTTCATGATCTATTTTTCCGATGAGAAT
TGAGAGTCAAAGACTTCCAAAGCCTTCACTCTGAAGAAGACCCTAAAATAATCTGCTTTGGAGG
GCTGCCTGGCATGTTCAAAGCCCTGGTTTGATAATAAGAGTAATAATTATTATTTGCTTTGGTA
CAGCATTTGAAAATTTGACCCTTTAGATTGCTTATTGAATATCTTGAGTACCTCACCTTGTTAG
GAATTTAATTGTCTCTCCAGGTAAATTGTTTCATATTAGACAGGTATCCATTGAGCCAAATATG
TTTTCTCATAATTTCTGTTAACCGTGTTCTAACTTTGGGCCGTACAGAAGAAAGTCCGCTTTCT
GCTTATTAGGTGGCAGTTCCAGGGACTGGCTGCTCTCTGCCTCCCTGCCACTTTTACAGTGCAG
CCATTGTCACCTCACACCAAGGTAACAGTGCAGCTTGAGCGACTGTCCCCTAAACATATGAGTA
TTCTATTTCTCCTTAACATATGCATTAGTTCCTTGTCTTGATGTTATAGCAGAATACTTAACAA
AAGCAAGTTAGGAAGAAGGGTTTCTTTAGTTTGAGTTCATACTCATGGACAGTGGTGTCAGGAG
CTTCAGACAGCTAGCCATCCATATCCACAAGCAGGAAGCAGAGGGAGATGAGTGCCTCTACTCA
GCTAAATCTCAACATCTTATCTATTCTGGAACCCATTGAGTGGTGGTGTTTACAGTCCCTGTGA
TTCTTTCCACTTCGGTTAACCCGCTCATAAATTTGTTTCTAGCTCCTATTGTGTTGACTGTATT
AACCATGTGGTATAAAGAATCCTTTAATACCCACACTCTGTCTATATCTCTTTTTGAAACTTTT
CTCTGAAACAGTTTGCTCTTGCTTTGACTCCTGCTTATCTTATCCTTTTATACTTAGGAGCCCG
AATGCTATTGCCTCTGGGAAGCCTTCCACAAACCTTCTGCGTGCTCCTACAGCACCCTCCACCT
CTCCAAGTGCAGCTCTCACCACACCTTTCTGCCATGGATCACTTAGTTTCTGTCCTTCACTAGA
CTGAAGCTCACAGGAACGAGGGCAATATTTTGATCATGGTTGTATCTGCAGTGCCCAGCACAAT
ACTGTAAATAAGTCTTGGAAGAATGGCATCTAGTGCTTTTTGTATGGGCCAAAGGGGCCTTGTG
CTGCTCCACCTCAGAGGAAACTTCAAGAAATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGAG
TCTCTGGGACCTTCCCTGCTCCATCATGGGGTCACCTCTAGGTCATTTTACCTGGGACAAATAC
CTAAAAGAAACAAGTTCAGTCCCAGCACCTGTCCATTGCTTCAAGCAGTCCTACACACCTCCAA
GCAATGAGTTCAAGATTAGCATGAAATTGGAAGCACAGGACCCCAGGAACACCACGTCCACCTG
TATTGCCACAGTAGTTGGACTGACAGGTGCCCGACTCCGTCTGCGCCTTGATGGCAGTGACAAC
AAGAATGACTTCTGGAGACTGGTTGACTCCTCCGAAATCCAACCAATTGGAAACTGTGAGAAGA
ATGGCGGTATGCTGCAGCCACCTCTAGGATTTCGGCTGAATGCCTCCTCTTGGCCCATGTTCCT
TTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAAGATTTTCCATAAGGAGCCACCATCA
CCTTCCCACAACTTCTTCAAAATGGGAATGAAGTTGGAAGCTGTGGACAGAAAGAACCCTCATT
TCATCTGCCCAGCCACTATTGGAGAGGTCCGAGGCTCAGAGGTGCTGGTCACCTTTGATGGGTG
GCGAGGCGCATTTGACTACTGGTGCCGCTTTGACTCCCGGGACATCTTTCCTGTGGGCTGGTGT
TCTTTGACTGGAGATAACCTGCAGCCGCCTGGCACCAAAGTTGTGATTCCAAAGAATCCTTCCC
CTTCGTCTGATGTGAGCACTGAGAAGCCCAGCATCAACAGCACCAAAACTGTCTTGGAGCCTCA
GCCAGGGCAGAGAGGGCGCAAACCAGGAAAGAAGCGGGGCCGAACGCCCAAGATCCTTATTCCC
CATCCCACCTCTACCCCATCCAAGTCAGCTGAACCTTTGAAATTTCCAAAGAAGAGAGGCCCCA
AGCCTGGCAGTAAGAGGAGACCTCGGACTTTGCTGAGCCCACCACCCACCTCACCAACAACCAG
CACTCCTGAACCGGACACCAGCACTGTTCCCCAAGATGCTGCCACCATCCCAAGTTCAGCCATG
CAGGCCCCCACAGTTTGTATCTACTTGAACAAGAGCGGCAGCACGGGCCCCCACTTGGATAAAA
AGAAGATCCAACAACTCCCTGACCATTTTGGGCCAGCCCGTGCCTCTGTGGTGTTGCAGCAGGC
TGTCCAGGCTTGCATTGACTGTGCTTATCACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGC
CATGGCGGTGAAGTCATCTCAGCCGTGTTCGACCGGGAACAGCACACACTCAACCTCCCAGCCG
TCAACAGCATCACCTATGTCCTCCGTTTCCTGGAGAAGCTCTGCCACAACCTTCGGAGTGACAA
TCTGTTTGGCAACCAGCCCTTTACACAGACTCACGTGTCACTCACTGCCACAGAGTACAGCCAC
GGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGGGCAATAGCCTGACGAGGTCCTTGG
AGACACACTCAGACCTGATGGACTCTGCCTTGAAGCCTGCCAACCTCGTCAGCACGTCCCAGAC
CCTCCGGACTCCTGGCTATCGGCCCTTGCTTCCCTCCTGTGGCCTTCCATTGAGCACTGTCTCT
GCTGTGCGCAGGCTCTGCTCTCGGGGAGTGTTAAAAGGAACAAGGGAAAGAAGGGATGTGGAAT
CATTTTGGAAACTAAATCATTCCCCAGGGTCAGATCGACACCTGGAGAGCCGAGATCCCCCTCG
CCTAAGTGGCCGGGACCCCTCCTCATGGACAGTGGAGGATGTGATGCAGTTTGTCCGGGAGGCT
GATCCTCAGCTTGGATCCCATGCTGACCTCTTCCGAAAACATGAAATCGATGGCAAGGCCCTGC
TCCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCCCTCAAGCT
CTCCTTTCACATTGACCGGCTGAAGCAGGGCAAGTTCTGAACAGGAGGCACTCTTCTCCCAGGA
AGCCGCCAGCCAGCTCCCAGGCACCGTAGTAGGGCTCTGGGTGACCTCAGGACTCTAGGAGGCT
GGAAAGCCACCACTGCTACCCTTCCTGCCCTGATGCGTCCTTCCATGAAGGACTGAGGAGGGAA
CAGTGGGTAGGGCTGGTGCTGCTCTTCCCATTAGCCTGCTGTGGCTCCCGGGCCCTTCTATTTA
TTTCTCAAGGCTAGCCAGCCTCTCACCACAAGTTTAGACTGAGCACCTTTCAAGAGATGAGGAA
GACGCCAACCCTAGGACCTTGAAAGGCCCTGGTACCCAGGCCCCTTACCACCTCCTGGGCTTGG
CATAGTGTCCCATGGCCCCCAGCTCATGCCTTCTCACTGGATCCCCAGACTCTGAACTTATGGT
GCAGACCTTTTTAAAGAAATCTTTTCTTATTGCTAATTTATTGCTTCTCGCATTTGGACTTAAT
GCTTCTCTTGCACCAAACATTTTTTTTGGAAGAGGGAGACCATCCTCTGTGGTCCAGAGAGGGC
CTCTCCAGAGAAGCGTGGCCCTATTTCAGAAGACACTGCCCTAGGGCCCTTCTTCTCTGGAATG
GACAAAGTATATGGCTCACTGAGCATAAGGTGAAGGTCCCTCTTCCTACACTGGGTCCTCTGTA
GCCCCAGCCTTCATCTCTGATGGAGTTTTCCCCTCACCCTGCCCACAGCTCCCTGCCCTGGTCA
GAATTGCTGCAAAAGATGGGGCCTGATGCTATTAGGTCACGGGGCCCCAATGGTGGGATGGAGG
ACCTCAAGGCTGGAGGTTGTCCTCGCTCCTGTACTTCCTCCTAAGCAAGTCAGCAGCACTGCTG
CCCCCACTGCCATCTGAACTATTTTATGTCAGTTTGTTTATAAATAAAGACCAATACAAATGCC
TA

hide sequence

RefSeq Acc Id:

XM_039110300 ⟹ XP_038966228

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	133,991,176 - 134,115,893 (+)	NCBI

RefSeq Acc Id:

XM_039110302 ⟹ XP_038966230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	133,991,174 - 134,115,893 (+)	NCBI

RefSeq Acc Id:

XM_039110303 ⟹ XP_038966231

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	133,991,182 - 134,115,893 (+)	NCBI

RefSeq Acc Id:

XM_039110304 ⟹ XP_038966232

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	133,991,185 - 134,115,893 (+)	NCBI

RefSeq Acc Id:

XM_039110305 ⟹ XP_038966233

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	133,991,167 - 134,108,489 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103139	(Get FASTA)	NCBI Sequence Viewer
	XP_038966228	(Get FASTA)	NCBI Sequence Viewer
	XP_038966230	(Get FASTA)	NCBI Sequence Viewer
	XP_038966231	(Get FASTA)	NCBI Sequence Viewer
	XP_038966232	(Get FASTA)	NCBI Sequence Viewer
	XP_038966233	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI31848	(Get FASTA)	NCBI Sequence Viewer
	EDL80334	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001103139 ⟸ NM_001109669

- UniProtKB:

A2RRU0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETSSVPAPVHCFKQSYTPPSNEFKISMKL
EAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLG
FRLNASSWPMFLLKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEV
RGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKP
SINSTKTVLEPQPGQRGRKPGKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRRPRT
LLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHF
GPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRF
LEKLCHNLRSDNLFGNQPFTQTHVSLTATEYSHGHDRYLPGETFVLGNSLTRSLETHSDLMDSA
LKPANLVSTSQTLRTPGYRPLLPSCGLPLSTVSAVRRLCSRGVLKGTRERRDVESFWKLNHSPG
SDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMK
YMGLKLGPALKLSFHIDRLKQGKF

hide sequence

RefSeq Acc Id:

XP_008762249 ⟸ XM_008764027

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQPSELLCCSCRSLLAVTLISGVALQPTCCRNRQGPFTDLCWYVQKAPSVDWNDVKKPKYGHLS
ESASQYQEPVDILELGHFTWDKYLKETSSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTS
TCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPM
FLLKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFD
GWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSINSTKTVLE
PQPGQRGRKPGKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRRPRTLLSPPPTSPT
TSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVVLQ
QAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRS
DNLFGNQPFTQTHVSLTATEYSHGHDRYLPGETFVLGNSLTRSLETHSDLMDSALKPANLVSTS
QTLRTPGYRPLLPSCGLPLSTVSAVRRLCSRGVLKGTRERRDVESFWKLNHSPGSDRHLESRDP
PRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPAL
KLSFHIDRLKQGKF

hide sequence

RefSeq Acc Id:

XP_008762250 ⟸ XM_008764028

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQPSELLCCSCRSLLAVTLISGVALQPTCCRNRQGPFTDLCWYVQKAPSVDWNDVKKPKYGHLS
ESASQYQEPVDILELGHFTWDKYLKETSSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTS
TCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPM
FLLKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFD
GWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSINSTKTVLE
PQPGQRGRKPGKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRRPRTLLSPPPTSPT
TSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVVLQ
QAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRS
DNLFGNQPFTQTHVSLTATEYSHGHDRYLPGETFVLGNSLTRSLETHSDLMDSALKPANLVSTS
QTLRTPGYRPLLPSCGLPLSTVSAVRRLCSRGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVRE
ADPQLGSHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF

hide sequence

RefSeq Acc Id:

XP_017448984 ⟸ XM_017593495

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETSSVPAPVHCFKQSYTPPSNEFKISMKL
EAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLG
FRLNASSWPMFLLKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEV
RGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKP
SINSTKTVLEPQPGQRGRKPGKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRRPRT
LLSPPPTSPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHF
GPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRF
LEKLCHNLRSDNLFGNQPFTQTHVSLTATEYSHGHDRYLPGETFVLGNSLTRSLETHSDLMDSA
LKPANLVSTSQTLRTPGYRPLLPSCGLPLSTVSAVRRLCSRGVLKGTRERRDVESFWKLNHSPG
SDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMK
YMGLKLGPALKLSFHIDRLKQGKF

hide sequence

RefSeq Acc Id:

ENSRNOP00000051099 ⟸ ENSRNOT00000045954

RefSeq Acc Id:

ENSRNOP00000072942 ⟸ ENSRNOT00000078622

RefSeq Acc Id:	XP_038966233 ⟸ XM_039110305
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038966230 ⟸ XM_039110302
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038966228 ⟸ XM_039110300
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038966231 ⟸ XM_039110303
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038966232 ⟸ XM_039110304
- Peptide Label:	isoform X4

Protein Domains

SAM

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305788	AgrOrtholog
Ensembl Genes	ENSRNOG00000032183	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000051099	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000072942	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045954	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000078622	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
	1.20.1380.20	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7100459	IMAGE-MGC_LOAD
InterPro	DUF3588	UniProtKB/TrEMBL
	Mbt	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM/pointed	UniProtKB/TrEMBL
	SCML2_RBR	UniProtKB/TrEMBL
	SLED_sf	UniProtKB/TrEMBL
KEGG Report	rno:362581	UniProtKB/TrEMBL
MGC_CLONE	MGC:156716	IMAGE-MGC_LOAD
NCBI Gene	362581	ENTREZGENE
Pfam	DUF3588	UniProtKB/TrEMBL
	MBT	UniProtKB/TrEMBL
	RBR	UniProtKB/TrEMBL
	SAM_1	UniProtKB/TrEMBL
PhenoGen	Scmh1	PhenoGen
PROSITE	MBT	UniProtKB/TrEMBL
SMART	MBT	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A0G2K483_RAT	UniProtKB/TrEMBL
	A2RRU0	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	D3ZRT7	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-31	Scmh1	Scm polycomb group protein homolog 1	Scmh1	sex comb on midleg homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Scmh1	sex comb on midleg homolog 1 (Drosophila)	Scmh1	sex comb on midleg homolog 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Scmh1	sex comb on midleg homolog 1	Scmh1_predicted	sex comb on midleg homolog 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Scmh1_predicted	sex comb on midleg homolog 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD