Slc66a1 (solute carrier family 66 member 1) - Rat Genome Database

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Gene: Slc66a1 (solute carrier family 66 member 1) Rattus norvegicus
Analyze
Symbol: Slc66a1
Name: solute carrier family 66 member 1
RGD ID: 1311627
Description: Enables basic amino acid transmembrane transporter activity. Involved in intracellular amino acid homeostasis. Located in lysosomal membrane. Orthologous to human SLC66A1 (solute carrier family 66 member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362642; lysosomal amino acid transporter 1 homolog; PQ loop repeat containing 2; PQ-loop repeat-containing protein 2; Pqlc2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25151,537,870 - 151,552,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,542,376 - 151,552,259 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,240,875 - 154,250,750 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05156,015,223 - 156,025,098 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05155,996,194 - 156,006,086 (-)NCBIRnor_WKY
Rnor_6.05157,744,945 - 157,759,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,745,490 - 157,759,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,485,179 - 161,499,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,087,137 - 158,097,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15158,097,687 - 158,106,359 (-)NCBI
Celera5149,924,109 - 149,930,042 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Heptahelical protein PQLC2 is a lysosomal cationic amino acid exporter underlying the action of cysteamine in cystinosis therapy. Jezegou A, etal., Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):E3434-43. doi: 10.1073/pnas.1211198109. Epub 2012 Nov 20.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22822152  


Genomics

Comparative Map Data
Slc66a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25151,537,870 - 151,552,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,542,376 - 151,552,259 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,240,875 - 154,250,750 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05156,015,223 - 156,025,098 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05155,996,194 - 156,006,086 (-)NCBIRnor_WKY
Rnor_6.05157,744,945 - 157,759,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,745,490 - 157,759,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,485,179 - 161,499,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,087,137 - 158,097,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15158,097,687 - 158,106,359 (-)NCBI
Celera5149,924,109 - 149,930,042 (-)NCBICelera
Cytogenetic Map5q36NCBI
SLC66A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,312,326 - 19,334,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl119,312,326 - 19,329,300 (+)EnsemblGRCh38hg38GRCh38
GRCh37119,638,820 - 19,658,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,511,327 - 19,528,381 (+)NCBINCBI36Build 36hg18NCBI36
Build 34119,384,125 - 19,404,227NCBI
Celera117,965,741 - 17,982,808 (+)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef117,885,165 - 17,902,100 (+)NCBIHuRef
CHM1_1119,748,043 - 19,765,096 (+)NCBICHM1_1
T2T-CHM13v2.0119,135,861 - 19,155,963 (+)NCBIT2T-CHM13v2.0
Slc66a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,021,341 - 139,038,025 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,021,340 - 139,038,019 (-)EnsemblGRCm39 Ensembl
GRCm384139,294,030 - 139,310,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,294,029 - 139,310,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv374138,853,920 - 138,866,615 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364138,570,606 - 138,582,754 (-)NCBIMGSCv36mm8
Celera4141,084,526 - 141,097,214 (-)NCBICelera
Cytogenetic Map4D3NCBI
Slc66a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545216,770 - 26,189 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,459 - 22,259 (+)NCBIChiLan1.0ChiLan1.0
SLC66A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1119,317,244 - 19,333,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,317,244 - 19,333,926 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0118,270,882 - 18,288,387 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC66A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,318,200 - 79,334,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,318,345 - 79,320,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,831,339 - 75,848,952 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,940,414 - 79,956,745 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,939,336 - 79,956,723 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,701,369 - 76,717,652 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,711,001 - 77,727,285 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,780,655 - 78,798,382 (-)NCBIUU_Cfam_GSD_1.0
Slc66a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,748,339 - 39,763,537 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364745,576,507 - 5,590,279 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364745,573,175 - 5,588,319 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC66A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,761,782 - 77,778,571 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,761,861 - 77,778,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2671,823,957 - 71,840,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC66A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,217,379 - 113,234,176 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20113,216,715 - 113,233,964 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660332,925,128 - 2,941,705 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc66a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247644,457,156 - 4,465,109 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247644,455,843 - 4,466,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc66a1
68 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:86
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000023896
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat

Markers in Region
AI175351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25151,542,434 - 151,542,600 (+)MAPPERmRatBN7.2
Rnor_6.05157,749,510 - 157,749,675NCBIRnor6.0
Rnor_5.05161,489,744 - 161,489,909UniSTSRnor5.0
RGSC_v3.45158,087,708 - 158,087,873UniSTSRGSC3.4
Celera5149,922,648 - 149,922,813UniSTS
RH 3.4 Map51036.4UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 16 4 1
Low 3 43 57 41 9 41 8 11 58 31 40 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_174173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC158607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023896   ⟹   ENSRNOP00000023896
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5151,542,376 - 151,552,259 (-)Ensembl
Rnor_6.0 Ensembl5157,749,457 - 157,759,322 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083341   ⟹   ENSRNOP00000072028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5157,745,490 - 157,758,084 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099105   ⟹   ENSRNOP00000077592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5151,542,382 - 151,550,124 (-)Ensembl
RefSeq Acc Id: NM_001108689   ⟹   NP_001102159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25151,543,892 - 151,549,825 (-)NCBI
Rnor_6.05157,750,964 - 157,756,898 (-)NCBI
Rnor_5.05161,485,179 - 161,499,508 (-)NCBI
RGSC_v3.45158,087,137 - 158,097,572 (-)RGD
Celera5149,924,109 - 149,930,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239239   ⟹   XP_006239301
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25151,537,870 - 151,552,205 (-)NCBI
Rnor_6.05157,744,945 - 157,758,713 (-)NCBI
Rnor_5.05161,485,179 - 161,499,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239240   ⟹   XP_006239302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25151,537,870 - 151,552,338 (-)NCBI
Rnor_6.05157,744,945 - 157,759,370 (-)NCBI
Rnor_5.05161,485,179 - 161,499,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593523   ⟹   XP_017449012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25151,537,870 - 151,549,739 (-)NCBI
Rnor_6.05157,744,945 - 157,757,235 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001102159   ⟸   NM_001108689
- Sequence:
RefSeq Acc Id: XP_006239302   ⟸   XM_006239240
- Peptide Label: isoform X1
- UniProtKB: B0BMY1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006239301   ⟸   XM_006239239
- Peptide Label: isoform X1
- UniProtKB: F7FC79 (UniProtKB/Swiss-Prot),   B0BMY1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017449012   ⟸   XM_017593523
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000023896   ⟸   ENSRNOT00000023896
RefSeq Acc Id: ENSRNOP00000072028   ⟸   ENSRNOT00000083341
RefSeq Acc Id: ENSRNOP00000077592   ⟸   ENSRNOT00000099105
Protein Domains
PQ-loop

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BMY1-F1-model_v2 AlphaFold B0BMY1 1-293 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694204
Promoter ID:EPDNEW_R4727
Type:initiation region
Name:Pqlc2_1
Description:PQ loop repeat containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05157,759,316 - 157,759,376EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311627 AgrOrtholog
BioCyc Gene G2FUF-39421 BioCyc
Ensembl Genes ENSRNOG00000017706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000023896.7 UniProtKB/TrEMBL
  ENSRNOP00000077592 ENTREZGENE
  ENSRNOP00000077592.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023896.8 UniProtKB/TrEMBL
  ENSRNOT00000099105 ENTREZGENE
  ENSRNOT00000099105.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192223 IMAGE-MGC_LOAD
InterPro PQ-loop_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362642 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187473 IMAGE-MGC_LOAD
NCBI Gene 362642 ENTREZGENE
Pfam PQ-loop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc66a1 PhenoGen
SMART CTNS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y800_RAT UniProtKB/TrEMBL
  A0A8L2QDE2 ENTREZGENE, UniProtKB/TrEMBL
  B0BMY1 ENTREZGENE
  F7FC79 ENTREZGENE
  LAAT1_RAT UniProtKB/Swiss-Prot
UniProt Secondary F7FC79 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-09 Slc66a1  solute carrier family 66 member 1  Pqlc2  PQ loop repeat containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pqlc2  PQ loop repeat containing 2   Pqlc2_predicted  PQ loop repeat containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pqlc2_predicted  PQ loop repeat containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED