Swd2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Swd2 (Spike wave discharge measurement QTL 2) Rattus norvegicus

Symbol: Swd2
Name: Spike wave discharge measurement QTL 2
RGD ID: 1354631
Previously known as: T2swd/wag
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: brain total spike-and-wave discharge duration   (CMO:0001740)    
LOD Score: 3.64
P Value: 2.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85156,396,728 - 172,190,305RGD_MAPPER_PIPELINE
mRatBN7.25151,113,452 - 164,465,185RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05157,319,671 - 171,194,163RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05161,060,798 - 174,683,006RGDRnor5.0
RGSC_v3.45157,691,737 - 170,688,737RGDRGSC3.4
RGSC_v3.15157,701,777 - 170,699,258RGD
Cross Type: Intercross
Strains Crossed: ACI/N WAG/Rij 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
WAG/Rij  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Chromosomal mapping of genetic loci controlling absence epilepsy phenotypes in the WAG/Rij rat. Gauguier D, etal., Epilepsia 2004 Aug;45(8):908-15.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1309611Pla2g2ephospholipase A2, group IIE5151121363151127147Rat
1560468Otud3OTU deubiquitinase 35151135826151162207Rat
1596075Rnf186ring finger protein 1865151210492151211716Rat
1566357Tmco4transmembrane and coiled-coil domains 45151216499151294726Rat
62044Htr65-hydroxytryptamine receptor 65151295269151312853Rat
40978356LOC120103015uncharacterized LOC1201030155151317157151325656Rat
3151Nbl1NBL1, DAN family BMP antagonist5151318752151329948Rat
1560187Micos10mitochondrial contact site and cristae organizing system subunit 105151341124151367403Rat
41362887LOC120103016uncharacterized LOC1201030165151366710151367798Rat
41043490Trnap-agg30transfer RNA proline (anticodon AGG) 305151400838151400918Rat
41327343LOC120103017uncharacterized LOC1201030175151406408151413716Rat
1359099Capzbcapping actin protein of muscle Z-line subunit beta5151435600151535409Rat
1311627Slc66a1solute carrier family 66 member 15151537870151552259Rat
620311Akr7a2aldo-keto reductase family 7, member A25151552375151560914Rat
11403420LOC10835104960S ribosomal protein L21 pseudogene5151557706151558692Rat
41081152Rpl9-ps6ribosomal protein L9, pseudogene 65151561590151564762Rat
41396958Rps21-ps9ribosomal protein S21, pseudogene 95151575060151575295Rat
628635Akr7a3aldo-keto reductase family 7 member A35151590968151601394Rat
1311709Mrto4MRT4 homolog, ribosome maturation factor5151601780151608533Rat
1310427Emc1ER membrane protein complex subunit 15151608557151633888Rat
1563121Ubr4ubiquitin protein ligase E3 component n-recognin 45151635825151743931Rat
11510646Trnav-aac3transfer RNA valine (anticodon AAC) 35151685931151686002Rat
1624207Iffo2intermediate filament family orphan 25151830900151876948Rat
7489030Mir6215microRNA 62155151850759151850825Rat
1624206Aldh4a1aldehyde dehydrogenase 4 family, member A15151880002151905491Rat
61894Tas1r2taste 1 receptor member 25151909617151925760Rat
1564360Pax7paired box 75151996368152098023Rat
1309439Klhdc7akelch domain containing 7A5152218604152224707Rat
41310584LOC120103106NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like5152238538152242340Rat
1310117Igsf21immunoglobin superfamily, member 215152287834152512174Rat
40990336LOC120103019uncharacterized LOC1201030195152732403152760308Rat
1585585Arhgef10lRho guanine nucleotide exchange factor 10 like5152792247152935255Rat
41381585LOC120103021uncharacterized LOC1201030215152866852152870722Rat
41399912LOC120103020uncharacterized LOC1201030205152948438152954138Rat
41012019LOC120103022uncharacterized LOC1201030225152988982152994946Rat
1309986Rcc2regulator of chromosome condensation 25152994406153017223Rat
41224842LOC120103272small nucleolar RNA SNORA155153013761153013890Rat
1560424Padi6peptidyl arginine deiminase 65153021855153037443Rat
3290Padi4peptidyl arginine deiminase 45153041351153074412Rat
3289Padi3peptidyl arginine deiminase 35153089717153117146Rat
3287Padi1peptidyl arginine deiminase 15153119566153152034Rat
11392000Trnaa-ggc1transfer RNA alanine (anticodon GGC) 15153148357153148428Rat
7706312LOC102546642uncharacterized LOC1025466425153179682153185652Rat
3288Padi2peptidyl arginine deiminase 25153209053153251632Rat
1308598Sdhbsuccinate dehydrogenase complex iron sulfur subunit B5153264906153285570Rat
1307977Atp13a2ATPase cation transporting 13A25153292722153312143Rat
1306031Mfap2microfibril associated protein 25153312068153320266Rat
1305364Croccciliary rootlet coiled-coil, rootletin5153320962153363734Rat
40931018LOC120103023uncharacterized LOC1201030235153336474153344047Rat
735063Necap2NECAP endocytosis associated 25153370338153382753Rat
1591001Mien1-ps1migration and invasion enhancer 1, pseudogene 15153384604153386335Rat
2323583Rps21-ps1ribosomal protein S21, pseudogene 15153387133153387476Rat
41373048LOC120103386U6 spliceosomal RNA5153389988153390094Rat
1302954Spata21spermatogenesis associated 215153393309153419430Rat
1560286Szrd1SUZ RNA binding domain containing 15153418748153443286Rat
1304787Fbxo42F-box protein 425153451162153509564Rat
41150313LOC120103024ciliogenesis and planar polarity effector 2-like5153515263153522456Rat
1561421Cplane2ciliogenesis and planar polarity effector complex subunit 25153515507153516455Rat
11372222LOC108351054uncharacterized LOC1083510545153527374153541618Rat
1304766Arhgef19Rho guanine nucleotide exchange factor 195153536038153554203Rat
1307204Epha2Eph receptor A25153605644153634115Rat
2321550Rps27a-ps2ribosomal protein S27a, pseudogene 25153654975153655513Rat
1590955Fam131cfamily with sequence similarity 131, member C5153674459153690791Rat
68435Clcnkachloride voltage-gated channel Ka5153691208153706295Rat
628639Clcnkbchloride voltage-gated channel Kb5153710086153733162Rat
62021Hspb7heat shock protein family B (small) member 75153727782153731268Rat
1566083Srarpsteroid receptor associated and regulated protein5153740973153745077Rat
41131608Trnap-agg71transfer RNA proline (anticodon AGG) 715153742582153742654Rat
1307143Zbtb17zinc finger and BTB domain containing 175153753508153774613Rat
1589867Spenspen family transcriptional repressor5153775287153848677Rat
1359551Fblim1filamin binding LIM protein 15153883945153915524Rat
1566169Tmem82transmembrane protein 825153927486153931942Rat
1359157Slc25a34solute carrier family 25, member 345153932081153936854Rat
1307005Plekhm2pleckstrin homology and RUN domain containing M25153939582153978625Rat
1311815Ddi2DNA damage inducible 1 homolog 25153989591154035342Rat
1308424Agmatagmatinase5154043665154074278Rat
1359395Dnajc16DnaJ heat shock protein family (Hsp40) member C165154073372154106246Rat
61867Casp9caspase 95154108872154126628Rat
2548Cela2achymotrypsin like elastase 2A5154126879154136630Rat
1308379Ctrcchymotrypsin C5154147314154156540Rat
1307585Efhd2EF-hand domain family, member D25154160945154176980Rat
41372683LOC120103027uncharacterized LOC1201030275154166191154176642Rat
1563444Fhad1forkhead associated phosphopeptide binding domain 15154191593154310442Rat
1565452Tmem51transmembrane protein 515154325853154375882Rat
1359147Kaznkazrin, periplakin interacting protein5154392793155381567Rat
7556798LOC102556543uncharacterized LOC1025565435155086112155117875Rat
41390844LOC120103134uncharacterized LOC1201031345155094047155098985Rat
1594531Prdm2PR/SET domain 25155421066155531884Rat
9275519LOC103692503uncharacterized LOC1036925035155427014155438025Rat
41343775LOC120103347small nucleolar RNA SNORA175155523983155524131Rat
2324274Rps20-ps11ribosomal protein S20, pseudogene 115155541751155542269Rat
1587379Tuba1a-ps1tubulin, alpha 1A, pseudogene 15155578986155580721Rat
61819Pdpnpodoplanin5155601691155635656Rat
41178188Mrps18c-ps1mitochondrial ribosomal protein S18C, pseudogene 15155653808155654252Rat
11357843LOC108351056uncharacterized LOC1083510565155683180155686367Rat
1311416Lrrc38leucine rich repeat containing 385155685495155707578Rat
1588644Pramef27PRAME family member 275155752765155759663Rat
1564061Pramef8PRAME family member 85155778156155793935Rat
40956350LOC120103184uncharacterized LOC1201031845155836337155842393Rat
1565680Oog1oogenesin 15155841222155844210Rat
11425965Oog1l1oogenesin 1 like 15155872609155880103Rat
1587378Pramef5PRAME family member 55155905179155907727Rat
1588616Oog2l-ps1oogenesin 2 like, pseudogene 15155916280155919130Rat
1587479Klf4-ps1Kruppel like factor 4, pseudogene 15155920984155975266Rat
2324757Hspa8-ps14heat shock protein family A (Hsp70) member 8, pseudogene 145155934803155936915Rat
1565870Oog3oogenesin 35155941965155950037Rat
11422918Oog1-ps3oogenesin 1, pseudogene 35155975473155978753Rat
9144788LOC103692410uncharacterized LOC1036924105155998891156003422Rat
40938591LOC120103107PRAME family member 12-like5156009794156012390Rat
1306186Oog3l1oogenesin 3 like 15156075011156081595Rat
1587447Pramef17PRAME family member 175156138800156142916Rat
1561813Pramef25PRAME family member 255156157471156167485Rat
1587437Pramef20PRAME family member 205156171125156175601Rat
1587431Pramef12PRAME family member 125156193666156197199Rat
1587426Cfap107cilia and flagella associated protein 1075156212385156231481Rat
7240728LOC101241876ubiquitin-conjugating enzyme E2H pseudogene5156222650156224392Rat
1563257Aadacl3arylacetamide deacetylase-like 35156242182156252215Rat
1584908Pkm-ps9pyruvate kinase M1/2, pseudogene 95156327765156333340Rat
1593379Rps4x-ps4ribosomal protein S4, X-linked, pseudogene 45156331496156332390Rat
1308878Aadacl4fm1AADACL4 family member 15156356868156366479Rat
1563334Aadacl4fm2AADACL4 family member 25156426706156435333Rat
1565761Aadacl4arylacetamide deacetylase-like 45156514021156524567Rat
1559644AAdacl4fm3AADACL4 family member 35156562957156601387Rat
1587396AAdacl4fm3l1AADACL4 family member 3 like 15156616340156660184Rat
41325105Slc50a1-ps1solute carrier family 50 member 1, pseudogene 15156652637156654288Rat
40938168LOC120103322U2 spliceosomal RNA5156731160156731307Rat
41252684LOC120103202U1 spliceosomal RNA5156736935156737098Rat
7688236LOC102550246uncharacterized LOC1025502465156744643156747664Rat
1305584Dhrs3dehydrogenase/reductase 35156747939156782420Rat
1308403Vps13dvacuolar protein sorting 13 homolog D5156830509157055895Rat
7497539Rpl36-ps2ribosomal protein L36, pseudogene5157058147157063838Rat
621238Tnfrsf1bTNF receptor superfamily member 1B5157070642157104216Rat
3879Tnfrsf8TNF receptor superfamily member 85157123183157168421Rat
2319953Zfp54-ps1zinc finger protein 54, pseudogene 15157260727157263090Rat
9212267Rex2l5reduced expression 2 like 55157289647157297045Rat
41185038LOC120103190U6 spliceosomal RNA5157415839157415945Rat
7623967Rex2l4reduced expression 2 like 45157422388157447357Rat
7603077Csnk1g3-ps3casein kinase 1, gamma 3, pseudogene 35157457865157462163Rat
1586278Rex2l1-ps1reduced expression 2 like 1, pseudogene 15157462164157467683Rat
2319680Zfp34zinc finger protein 345157509762157513970Rat
9461644Rpl9l3ribosomal protein L9 like 35157529246157529919Rat
6484979Zfp715-ps3zinc finger protein 715, pseudogene 35157578907157600857Rat
6499833Csnk1g3-ps2casein kinase 1, gamma 3, pseudogene 25157602768157604408Rat
1586256Rex2reduced expression 25157624407157655095Rat
41309319LOC120103192U6 spliceosomal RNA5157661668157661774Rat
41208288Envl-ps9MLV-related proviral Env polyprotein-like, pseudogene 95157667260157668605Rat
41054755LOC120103207U6 spliceosomal RNA5157757303157757409Rat
41358647Csnk1g3-ps4casein kinase 1, gamma 3, pseudogene 45157777077157779988Rat
1598209Zfp534l1zinc finger protein 534 like 15157780156157799489Rat
41014938Rex2l6reduced expression 2 like 65157854013157869026Rat
41187377LOC120103211U6 spliceosomal RNA5157883496157883602Rat
1586249Rex2l2reduced expression 2 like 25157884460157919072Rat
41051487Gzfpx-ps1gastrula zinc finger protein XlCGF49.1-like, pseudogene 15157919226157928288Rat
1625998Vom2r-ps78vomeronasal 2 receptor, pseudogene 785157972263157972466Rat
41262442LOC120103205U6 spliceosomal RNA5157996975157997081Rat
41345120Csnk1g3-ps6casein kinase 1, gamma 3, pseudogene 65157998033158006335Rat
40962626Rex2l1reduced expression 2 like 15158006483158028876Rat
11425502Mzf1-ps1myeloid zinc finger 1, pseudogene 15158056614158075847Rat
1561413Zfp534l2zinc finger protein 534 like 25158083332158121374Rat
40937261LOC120103200U6 spliceosomal RNA5158193202158193308Rat
1565622Rex2l3reduced expression 2 like 35158197614158206543Rat
1586231Zfp933zinc finger protein 9335158264875158285036Rat
1587376Miipmigration and invasion inhibitory protein5158292510158299533Rat
628843Mfn2mitofusin 25158304285158335502Rat
621382Plod1procollagen-lysine, 2-oxoglutarate 5-dioxygenase 15158340674158367581Rat
13053502510039O18RiklRIKEN cDNA 2510039O18 gene like5158371925158378195Rat
3194Nppbnatriuretic peptide B5158416813158418175Rat
3193Nppanatriuretic peptide A5158429042158430351Rat
1305379Clcn6chloride voltage-gated channel 65158434299158465174Rat
1309952Mthfrmethylenetetrahydrofolate reductase5158465248158484999Rat
9312074LOC103692509NHP2-like protein 1 pseudogene5158486178158487351Rat
7658417C5h1orf167similar to human chromosome 1 open reading frame 1675158495514158505671Rat
1359346Agtrapangiotensin II receptor-associated protein5158507427158519036Rat
7646732LOC102551534uncharacterized LOC1025515345158519138158525313Rat
7635238LOC102551596uncharacterized LOC1025515965158527525158537091Rat
1585098Draxindorsal inhibitory axon guidance protein5158530149158563457Rat
11399174Rpl35a-ps7ribosomal protein L35A, pseudogene 75158543667158544122Rat
1307499Mad2l2mitotic arrest deficient 2 like 25158563545158576698Rat
620418Fbxo6F-box protein 65158576729158582520Rat
1562463Fbxo44F-box protein 445158583363158592510Rat
621751Fbxo2F-box protein 25158592926158598355Rat
11370875LOC108351059uncharacterized LOC1083510595158642708158648830Rat
1305820Disp3dispatched RND transporter family member 35158672015158720806Rat
7568401LOC102551951uncharacterized LOC1025519515158790419158814003Rat
1309588Ubiad1UbiA prenyltransferase domain containing 15158856582158880490Rat
68371Mtormechanistic target of rapamycin kinase5158884856158994311Rat
7553363Angptl7angiopoietin like 75158932096158937281Rat
41178027LOC120103237U6 spliceosomal RNA5158992110158992191Rat
1593248Exosc10exosome component 105158995313159018940Rat
620796Srmspermidine synthase5159025875159029076Rat
620214Masp2MBL associated serine protease 25159035892159049561Rat
1310906TardbpTAR DNA binding protein5159050518159062218Rat
1585063C5h1orf127similar to human chromosome 1 open reading frame 1275159075217159110642Rat
1583785Rpl14-ps2ribosomal protein L14, pseudogene 25159083415159084154Rat
9103835LOC103692510uncharacterized LOC1036925105159177068159182477Rat
1585054Rpl36-ps9ribosomal protein L36, pseudogene5159193171159193526Rat
1563533Casz1castor zinc finger 15159243965159393935Rat
40976780LOC120103035uncharacterized LOC1201030355159315651159317385Rat
41005014LOC120103036uncharacterized LOC1201030365159385958159387911Rat
68336Pex14peroxisomal biogenesis factor 145159399776159536260Rat
620334DffaDNA fragmentation factor subunit alpha5159540715159553639Rat
2383Cortcortistatin5159560591159562032Rat
5128728Cenpscentromere protein S5159563917159573534Rat
1583832Pgdphosphogluconate dehydrogenase5159582746159598945Rat
621520Kif1bkinesin family member 1B5159607697159742778Rat
7740951LOC102547502uncharacterized LOC1025475025159750135159753986Rat
1304738Ube4bubiquitination factor E4B5159766829159870509Rat
1562168Rbp7retinol binding protein 75159889723159894338Rat
1310996Nmnat1nicotinamide nucleotide adenylyltransferase 15159910242159928201Rat
1309253Lzicleucine zipper and CTNNBIP1 domain containing5159928260159941512Rat
1562749Ctnnbip1catenin, beta-interacting protein 15159961961160010942Rat
1306458Clstn1calsyntenin 15160031235160094585Rat
1310990Pik3cdphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta5160094952160142962Rat
41104095LOC120103039uncharacterized LOC1201030395160121608160136130Rat
1583947Tmem201transmembrane protein 2015160166240160188874Rat
1583942Slc25a33solute carrier family 25 member 335160195040160219961Rat
7665827LOC102548220uncharacterized LOC1025482205160221868160230064Rat
11081182Rps2-ps44ribosomal protein S2, pseudogene 445160315121160316979Rat
40999891LOC120103040uncharacterized LOC1201030405160327597160335926Rat
7685779LOC102548366uncharacterized LOC1025483665160334477160342093Rat
1309319Spsb1splA/ryanodine receptor domain and SOCS box containing 15160358292160418541Rat
41076681LOC120103041uncharacterized LOC1201030415160363004160374305Rat
1306562H6pdhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)5160434499160470203Rat
9106117LOC103692514uncharacterized LOC1036925145160492438160536093Rat
2325584Mir34amicroRNA 34a5160533002160533103Rat
1311096Gpr157G protein-coupled receptor 1575160550703160566432Rat
68328Slc2a5solute carrier family 2 member 55160583055160609994Rat
41108681Trnap-agg69transfer RNA proline (anticodon AGG) 695160593071160593143Rat
1583902Slc2a7solute carrier family 2 member 75160624793160643994Rat
70516Car6carbonic anhydrase 65160658104160676644Rat
40957798LOC120103042uncharacterized LOC1201030425160700913160702509Rat
2553Eno1enolase 15160719951160731337Rat
629475Rerearginine-glutamic acid dipeptide repeats5160765855161097678Rat
11484356LOC108351064small nuclear ribonucleoprotein G pseudogene5160808304160808653Rat
41403641LOC120103044uncharacterized LOC1201030445160819820160826047Rat
7489027Mir6332microRNA 63325160837304160837424Rat
11382308Lyrm1-ps1LYR motif containing 1, pseudogene 15160985501160990216Rat
708502Slc45a1solute carrier family 45, member 15161105137161129375Rat
41352911LOC120103185uncharacterized LOC1201031855161210596161213637Rat
11393480LOC108351065uncharacterized LOC1083510655161250833161259753Rat
41290417LOC120103045uncharacterized LOC1201030455161256550161271160Rat
7562865LOC102556220uncharacterized LOC1025562205161299020161308656Rat
1307599Errfi1ERBB receptor feedback inhibitor 15161323981161337289Rat
7515381LOC102556316uncharacterized LOC1025563165161338766161342775Rat
621808Park7Parkinsonism associated deglycase5161353718161376993Rat
1598208Tnfrsf9TNF receptor superfamily member 95161381662161408003Rat
41094677LOC120103213U1 spliceosomal RNA5161425753161425910Rat
7752004LOC102556501uncharacterized LOC1025565015161425916161432327Rat
3930Uts2urotensin 25161450846161456235Rat
621581Per3period circadian regulator 35161460228161495404Rat
61880Vamp3vesicle-associated membrane protein 35161498109161508704Rat
1562703Camta1calmodulin binding transcription activator 15161510283162356902Rat
41065227LOC120103136uncharacterized LOC1201031365161911199161914157Rat
41234809LOC120103137uncharacterized LOC1201031375162236317162237584Rat
2323948Rps7-ps23ribosomal protein S7, pseudogene 235162360919162361585Rat
1307731Dnajc11DnaJ heat shock protein family (Hsp40) member C115162442042162487966Rat
1308109Thap3THAP domain containing 35162488480162494149Rat
1308145Phf13PHD finger protein 135162494574162501350Rat
41032543Rps25-ps9ribosomal protein S25, pseudogene 95162512140162512644Rat
1305863Klhl21kelch-like family member 215162514888162523545Rat
1311581Zbtb48zinc finger and BTB domain containing 485162525234162533604Rat
61891Tas1r1taste 1 receptor member 15162533838162546408Rat
1566167Nol9nucleolar protein 95162546522162566625Rat
1303132Plekhg5pleckstrin homology and RhoGEF domain containing G55162577999162621518Rat
1598206Tnfrsf25TNF receptor superfamily member 255162621669162626341Rat
620652Espnespin5162626560162660439Rat
62082Hes2hes family bHLH transcription factor 25162667190162668235Rat
628856Acot7acyl-CoA thioesterase 75162686562162779309Rat
1564170Gpr153G protein-coupled receptor 1535162781587162792975Rat
621339Hes3hes family bHLH transcription factor 35162793611162799578Rat
621618Icmtisoprenylcysteine carboxyl methyltransferase5162804368162811129Rat
1586262Rnf207ring finger protein 2075162815351162828325Rat
621189Rpl22ribosomal protein L225162835241162843394Rat
1582725Chd5chromodomain helicase DNA binding protein 55162848273162898997Rat
41199189LOC120103139uncharacterized LOC1201031395162853752162869630Rat
61828Kcnab2potassium voltage-gated channel subfamily A regulatory beta subunit 25162899511162988057Rat
1560172Nphp4nephrocystin 45162986157163073708Rat
7592969LOC102549399uncharacterized LOC1025493995163254605163276115Rat
7559930LOC102549463uncharacterized LOC1025494635163372772163385090Rat
41139699LOC120102800uncharacterized LOC1201028005163412839163416456Rat
1583705Rps15l1ribosomal protein S15 like 15163534526163534957Rat
7567711LOC102550429uncharacterized LOC1025504295163882757163897322Rat
1590138Ajap1adherens junctions associated protein 15163907846164021004Rat
41074338LOC120102801uncharacterized LOC1201028015164197757164199030Rat
40995206LOC120103047uncharacterized LOC1201030475164309682164318401Rat
40962925LOC120103342small nucleolar RNA SNORA175164429616164429749Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10517D5Arb142575154137169154137426Ratregion
11001D5Wox101615158427876158428037Ratregion
11002D5Mit151425158430406158430550Ratregion
34206D5Mgh151595161165494161165651Ratregion
34467D5Mgh161355161317276161317411Ratregion
33702D5Mit161985154091335154091525Ratregion
36207D5Rat471195156756326156756443Ratregion
35348D5Rat451535152630083152630236Ratregion
36396D5Mgh311345154793327154793461Ratregion
36598D5Rat441585152400282152400440Ratregion
36628D5Rat481325159849133159849265Ratregion
35873D5Rat461115153178212153178323Ratregion
39700D5Rat1851245164465061164465185Ratregion
38026D5Rat1092495163581702163581951Ratregion
40654D5Rat1772095154083245154083454Ratregion
40740D5Rat1812175159171133159171350Ratregion
38574D5Rat1112255164202854164203083Ratregion
38958D5Rat672085152373157152373365Ratregion
39168D5Rat992415151113452151113693Ratregion
42767D5Rat2431395159978616159978755Ratregion
42768D5Rat2602375158424424158424661Ratregion
42769D5Rat2442005163026006163026191Ratregion
41492D5Rat1781635154828214154828377Ratregion
42320D5Rat561525152364409152364562Ratregion
41044D8Rat1422045159273379159273583Ratregion
41070D5Rat1801435159335183159335326Ratregion
44579D9Got1292915155486102155486134Ratregion
43873D5Got1141865159246389159246578Ratregion
43992D5Got1361175151308239151308356Ratregion
43993D5Got921275151308242151308369Ratregion
43995D5Got911845153109722153109906Ratregion
43996D5Got1041655157045927157046092Ratregion
43997D5Got1011255156801047156801172Ratregion
43998D5Got1371175156596715156596832Ratregion
43999D5Got982385156743652156743889Ratregion
44001D5Got971665157199462157199628Ratregion
44002D5Got963475155532103155532450Ratregion
44003D5Got1021365153559441153559577Ratregion
44007D5Got1132855160621260160621545Ratregion
44009D5Got1101985160311252160311450Ratregion
44010D5Got1052525158564104158564356Ratregion
44012D5Got1061635159098297159098460Ratregion
44013D5Got1182935164459038164459331Ratregion
44014D5Got1171195164183806164183925Ratregion
44015D5Got1161495164051770164051919Ratregion
44017D5Got1392025163264436163264638Ratregion
60473D5Got1003395153620771153621110Ratregion
60497D5Got942475152155183152155430Ratregion
69520D5Uwm441125151224880151224992Ratregion
69522D5Uwm452005151985430151985630Ratregion
69524D5Uwm461605153933738153933898Ratregion
69526D5Uwm472195153632528153632741Ratregion
69529D5Uwm492535159910699159910952Ratregion
69550D5Uwm501505162448268162448418Ratregion
61299D5Mco102455161481433161481680Ratregion
1630702D5Got2511415160701668160701809Ratregion
1631337D5Got2691755156007199156007374Ratregion
1579101D18Chm132255153685212153685449Ratregion
1629746D5Got2941005162579873162579979Ratregion
1635827D5Wox333455158414892158415237Ratregion
1634858D5Got2632415153628841153629082Ratregion
7206072Srm05159028206159028887Ratregion
7206480Mad2l21455158572165158572310Ratregion
7206498UniSTS:5466889235161512404161513327Ratregion
5035951PMC316718P14945158429171158429665Ratregion
5036075Afar1695151560717151560886Ratregion
7206402mMECIR6337715160404536160405309Ratregion
7206514UniSTS:5468138125160440463160441275Ratregion
7206686UniSTS:5475232175158429341158429558Ratregion
5036376Itga205151753551151753981Ratregion
5039142RH1275362045161097307161097511Ratregion
5037131HSC11D0222825159051958159052240Ratregion
5031274PMC123178P15135158429113158429626Ratregion
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7205832D17S18359575156176205156177162Ratregion
5031386PMC15566P12665158429401158429667Ratregion
5031564AU0479102365152075707152075941Ratregion
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5031898AU0467812215160403468160403687Ratregion
5034584AW2520872075153730940153731147Ratregion
5034648BI2750712345151601823151602057Ratregion
5026740RH1333542035151905182151905385Ratregion
5026760RH1334252055160095082160095287Ratregion
5034732BI2762051815161095586161095767Ratregion
5034734BF3919161635159938551159938714Ratregion
5035102RH444681655161512312161512477Ratregion
5035150AI1753511665151542434151542600Ratregion
5032367AU023234965155793793155793890Ratregion
5032489D4Ertd22e2075153421206153421413Ratregion
5032491D4Ertd432e2045159377476159377680Ratregion
5032517Nppa3525158428778158429130Ratregion
5035366BE1144971505160399752160399902Ratregion
5027169SGC382582575159511471159511728Ratregion
5032655RH1348051895156830675156830864Ratregion
5027281AI7853031005160439088160439188Ratregion
5027283AW5452841325153633602153633734Ratregion
5035192BG3813311545152287859152288013Ratregion
5035266BM3852181545162565303162565457Ratregion
5030083BE1100841545154704721154704875Ratregion
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5030317BE1057191625158257325158257487Ratregion
5033129RH1377041325154880824154880956Ratregion
5025246RH1275782205155600878155601098Ratregion
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5030853BE1207351805153506143153506323Ratregion
5025704RH1293371805159665942159666122Ratregion
5028251D4Mit312665154195329154195395Ratregion
5028322SHGC-741831745161095599161095773Ratregion
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5055029RH1435651945153731511153731705Ratregion
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5054127RH1430462075160791029160791236Ratregion
5057488BG3759202135152217073152217286Ratregion
5054435RH1432221485151514735151514883Ratregion
5054453RH1432331905162822191162822381Ratregion
5054727RH1433901075156832895156833002Ratregion
5057546BE0955212025161120136161120338Ratregion
5057704BF3860391745153207243153207417Ratregion
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5055855RH1440411095158691540158692676Ratregion
5059568BE0973021855154718913154719098Ratregion
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5056723RH1445432385154217589154217827Ratregion
5056495RH1444112205162793644162793864Ratregion
505221342.MMHAP20FRF12.seq1745155499161155499335Ratregion
5052438C759632485153691291153691539Ratregion
5058188AI1362511925151669609151669801Ratregion
5059728BE1030351515162982322162982473Ratregion
5059802BI2854182335158482344158482577Ratregion
5055527RH1438522215162501020162501241Ratregion
5055541RH1438612715160132974160133245Ratregion
5052843RH1423061645155602043155602207Ratregion
5053035RH1424161855154137407154137592Ratregion
5058334BF4194451265161476220161476346Ratregion
5058398AI7057921765162815512162815688Ratregion
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5057826BF3862291775154329173154329350Ratregion
5050702RH1342092055153119584153119789Ratregion
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5052440AU040698975153995867153995964Ratregion
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5052755RH1422531915153774337153774528Ratregion
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5049052RH1332581815158576936158577117Ratregion
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5048006RH1326542195153553483153553702Ratregion
5046830RH1319791935153994571153994764Ratregion
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5049434RH1334791955153633913153634108Ratregion
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5046994RH1320733015158576197158576498Ratregion
5047056RH1321082035162626083162626286Ratregion
5048226RH1327801885154075443154075631Ratregion
5042080RH1292272085160358949160359157Ratregion
5042126RH1292551505162814531162814681Ratregion
5047376RH1322911825162898803162898985Ratregion
5042272RH1293391605154160759154160919Ratregion
5042272RH1293391605154160759154160919Ratregion
5049552RH1335471805158432486158432666Ratregion
5040180RH1281352155153016933153017148Ratregion
5040236RH1281672025158305395158305597Ratregion
5042854RH1296841805160010714160010894Ratregion
5042860RH1296881815154427348154427529Ratregion
5039342RH1276512115158377905158378116Ratregion
5039430RH1277012185160094236160094454Ratregion
5042000RH1291801815153283964153285543Ratregion
5040514RH1283272205151535126151535346Ratregion
5039728RH1278731795161553467161553646Ratregion
5040742RH1284572205160731064160731284Ratregion
5040792RH1284861945158856592158856786Ratregion
5040108RH1280941965153251389153251585Ratregion
5042872RH1296952205153932181153932401Ratregion
5040990RH1286001825162662613162663181Ratregion
5043714RH1301851545159399852159400006Ratregion
5042912RH1297182005158868705158868905Ratregion
5043034RH12979105159037096159037746Ratregion
5043186RH1298811805153370369153370549Ratregion
5072650RH1369721975151339188151339385Ratregion
5074064RH1377981405159612894159613034Ratregion
5075540RH1386531825151646049151646231Ratregion
5072298RH136768995158598218158598317Ratregion
5074318RH1379471395151137990151138129Ratregion
5074558RH1380861555159599446159599601Ratregion
5074706RH1381716945162901917162902611Ratregion
5075208RH1384611715162487933162488104Ratregion
5076634RH1392901445151630611151630755Ratregion
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5079032RH1406951985154130449154131766Ratregion
5070676RH1346401955153311825153312020Ratregion
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5080302RH1415011825160421030160421212Ratregion
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5071004RH1348311865156823534156823720Ratregion
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5070796RH1347101705158994128158994298Ratregion
5071808RH1352962125155422169155422381Ratregion
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5065072BF4056241505162433190162433340Ratregion
5061840AW5338242015160077279160077480Ratregion
5067066AU0479852995151326895151327192Ratregion
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5068050AU0473771585163531038163531196Ratregion
5070043RH944351915157123186157123377Ratregion
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5062006BI2881001655159507383159507548Ratregion
5065132AW5360471555153763015153763170Ratregion
5065206AA9633471525151318773151318925Ratregion
5065358BI2972661645153224951153225115Ratregion
5062500BF4033241795161906184161906363Ratregion
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5065462BE1155731765159402171159402347Ratregion
5062526BE1067911505160535884160536034Ratregion
5062568BE1068662165164027884164028100Ratregion
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5064190BE1141941555161663269161663424Ratregion
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5060218BI2797923315153710226153710557Ratregion
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5066066BE1167031705153887111153887281Ratregion
5064634BF399470995159860681159860780Ratregion
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5061378BE0997241515153857032153857183Ratregion
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5061598BE1055821885155793710155793898Ratregion
5061632BE1057041765153741005153741181Ratregion
5082183BI2803865455158429613158430158Ratregion
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5087285AW5308001855162402953162403138Ratregion
5082515BI2749751095162669222162669331Ratregion
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5086405AI1703021565154191145154191301Ratregion
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5083113BI2751901655158340889158341054Ratregion
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5088581AU0486551035159659835159659938Ratregion
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5085615BM3840512205160533639160533859Ratregion
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5084986AI0088621805159672232159672412Ratregion
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5085264BE0965511705157058324157058494Ratregion
5083471BI2823031135159393130159393243Ratregion
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5503031MARC_65458-65459:1186500885:37375158347887158348624Ratregion
5503164ksks1603095155447866155448175Ratregion
5503954Klf45525155921461155922013Ratregion
5504604PMC312773P31205155479438155479558Ratregion
5504841ha241905164105724164107178Ratregion
5505384Epha27145153633275153633989Ratregion
5505564UniSTS:4822669195160651881160652800Ratregion
5505978UniSTS:496742955162496500162496595Ratregion
5506376UniSTS:4790445425159052390159052932Ratregion
5506859G465972515154175936154176187Ratregion
5507063UniSTS:2243111625151319532151319694Ratregion
5506937RH1018472175162525234162525451Ratregion
5507317G481167935152956092152956885Ratregion
5502158MARC_7131-7132:996687522:14625158986103158986565Ratregion
5502158MARC_7131-7132:996687522:14625158986103158986808Ratregion
5502158MARC_7131-7132:996687522:14625158986520158986565Ratregion
5499867UniSTS:2351021975161458137161458334Ratregion
5499865UniSTS:2350932815158432491158432772Ratregion
5501363RH159074015160078730160079132Ratregion
5501420Pax76455152094581152095226Ratregion
5501462D1S2335E1175162768913162769030Ratregion
5501578RH41831815153418786153418865Ratregion
5502152MARC_6491-6492:996689696:16715151604652151605323Ratregion
Position Markers

Flank 1: (D5Rat99)
Rat AssemblyChrPosition (strand)Source
GRCr85156,396,728 - 156,396,969 (+)Marker Load Pipeline
mRatBN7.25151,113,452 - 151,113,693 (+)MAPPER
Rnor_6.05157,319,671 - 157,319,911NCBI
Rnor_5.05161,060,798 - 161,061,038UniSTS
RGSC_v3.45157,691,737 - 157,691,978RGD
RGSC_v3.45157,691,738 - 157,691,978UniSTS
RGSC_v3.15157,701,777 - 157,702,017RGD
Celera5149,499,210 - 149,499,450UniSTS
RH 3.4 Map51033.5UniSTS
RH 3.4 Map51033.5RGD
RH 2.0 Map51026.6RGD
SHRSP x BN Map589.7999RGD
Peak: (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,165,494 - 161,165,651 (+)MAPPER
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.15167,854,767 - 167,854,925RGD
RH 3.4 Map51122.3RGD
RH 3.4 Map51122.3UniSTS
RH 2.0 Map51103.8RGD
Cytogenetic Map5 RGD
Flank 2: (D5Rat185)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,465,061 - 164,465,185 (+)MAPPER
Rnor_6.05171,194,040 - 171,194,163NCBI
Rnor_5.05174,682,883 - 174,683,006UniSTS
RGSC_v3.45170,688,613 - 170,688,737RGD
RGSC_v3.45170,688,614 - 170,688,737UniSTS
RGSC_v3.15170,698,877 - 170,699,258RGD
Celera5162,679,245 - 162,679,368UniSTS
FHH x ACI Map5101.9RGD
FHH x ACI Map5101.9UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
631498Bp100Blood pressure QTL 1004.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5158418175158429042Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Swd2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type Intercross  
qtl_general Region covered by the QTL shows synteny with mouse chromosome 4 (58-79 cM) and human 1pter-p32. 1302436