Swd2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Swd2 (Spike wave discharge measurement QTL 2) Rattus norvegicus

Symbol: Swd2
Name: Spike wave discharge measurement QTL 2
RGD ID: 1354631
Previously known as: T2swd/wag
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: brain total spike-and-wave discharge duration   (CMO:0001740)    
LOD Score: 3.64
P Value: 2.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85156,396,728 - 172,190,305RGD_MAPPER_PIPELINE
mRatBN7.25151,113,452 - 164,465,185RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05157,319,671 - 171,194,163RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.05161,060,798 - 174,683,006RGDRnor_5.0
RGSC_v3.45157,691,737 - 170,688,737RGDRGSC_v3.4
RGSC_v3.15157,701,777 - 170,699,258RGD
Cross Type: Intercross
Strains Crossed: ACI/N WAG/Rij 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
WAG/Rij  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Chromosomal mapping of genetic loci controlling absence epilepsy phenotypes in the WAG/Rij rat. Gauguier D, etal., Epilepsia 2004 Aug;45(8):908-15.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1309611Pla2g2ephospholipase A2, group IIE5156404639156410421Rat
1560468Otud3OTU deubiquitinase 35156419099156445341Rat
402324968LOC134487023uncharacterized LOC1344870235156480580156485473Rat
1596075Rnf186ring finger protein 1865156493750156494974Rat
1566357Tmco4transmembrane and coiled-coil domains 45156498506156577967Rat
62044Htr65-hydroxytryptamine receptor 65156579901156595147Rat
40978356LOC120103015uncharacterized LOC1201030155156599461156608890Rat
3151Nbl1NBL1, DAN family BMP antagonist5156601986156613182Rat
1560187Micos10mitochondrial contact site and cristae organizing system subunit 105156624356156650631Rat
41362887LOC120103016uncharacterized LOC1201030165156649968156657738Rat
41043490Trnap-agg30transfer RNA proline (anticodon AGG) 305156684059156684139Rat
41327343LOC120103017uncharacterized LOC1201030175156688288156699672Rat
402263070LOC134487024uncharacterized LOC1344870245156703892156718619Rat
1359099Capzbcapping actin protein of muscle Z-line subunit beta5156718619156818623Rat
1311627Slc66a1solute carrier family 66 member 15156821084156835558Rat
620311Akr7a2aldo-keto reductase family 7, member A25156835589156844127Rat
11403420LOC10835104960S ribosomal protein L21 pseudogene5156840984156841472Rat
41081152Rpl9-ps6ribosomal protein L9, pseudogene 65156844587156849655Rat
41396958Rps21-ps9ribosomal protein S21, pseudogene 95156858272156858507Rat
402214563LOC134487025uncharacterized LOC1344870255156863759156875481Rat
628635Akr7a3aldo-keto reductase family 7 member A35156876721156884599Rat
1311709Mrto4MRT4 homolog, ribosome maturation factor5156884985156891738Rat
1310427Emc1ER membrane protein complex subunit 15156891773156917092Rat
1563121Ubr4ubiquitin protein ligase E3 component n-recognin 45156919029157027127Rat
11510646Trnav-aac3transfer RNA valine (anticodon AAC) 35156969133156969204Rat
1624207Iffo2intermediate filament family orphan 25157114089157160135Rat
7489030Mir6215microRNA 62155157133945157134011Rat
402412689LOC134479043uncharacterized LOC1344790435157152669157154958Rat
1624206Aldh4a1aldehyde dehydrogenase 4 family, member A15157163189157188673Rat
61894Tas1r2taste 1 receptor member 25157192799157208937Rat
1564360Pax7paired box 75157279623157381188Rat
1309439Klhdc7akelch domain containing 7A5157501740157507843Rat
41310584LOC120103106NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like5157521672157527046Rat
1310117Igsf21immunoglobin superfamily, member 215157570964157795290Rat
402212064LOC134487088uncharacterized LOC1344870885157876759157879886Rat
402113038LOC134479044uncharacterized LOC1344790445157926001157947965Rat
40990336LOC120103019uncharacterized LOC1201030195158019647158042970Rat
1585585Arhgef10lRho guanine nucleotide exchange factor 10 like5158075370158218358Rat
41381585LOC120103021uncharacterized LOC1201030215158148524158152982Rat
402056218LOC134487026uncharacterized LOC1344870265158218360158221243Rat
41399912LOC120103020uncharacterized LOC1201030205158231775158237235Rat
41012019LOC120103022uncharacterized LOC1201030225158272053158278017Rat
1309986Rcc2regulator of chromosome condensation 25158277476158300294Rat
41224842LOC120103272small nucleolar RNA SNORA155158296832158296961Rat
1560424Padi6peptidyl arginine deiminase 65158304118158320508Rat
3290Padi4peptidyl arginine deiminase 45158324417158357466Rat
3289Padi3peptidyl arginine deiminase 35158372764158400193Rat
3287Padi1peptidyl arginine deiminase 15158402614158435077Rat
11392000Trnaa-ggc1transfer RNA alanine (anticodon GGC) 15158431401158431472Rat
7706312LOC102546642uncharacterized LOC1025466425158462719158467646Rat
3288Padi2peptidyl arginine deiminase 25158492087158534662Rat
1308598Sdhbsuccinate dehydrogenase complex iron sulfur subunit B5158547775158568589Rat
1307977Atp13a2ATPase cation transporting 13A25158575727158595157Rat
1306031Mfap2microfibril associated protein 25158595121158603283Rat
1305364Croccciliary rootlet coiled-coil, rootletin5158603979158646728Rat
40931018LOC120103023uncharacterized LOC1201030235158619480158627623Rat
735063Necap2NECAP endocytosis associated 25158653347158665761Rat
1591001Mien1-ps1migration and invasion enhancer 1, pseudogene 15158665769158669211Rat
2323583Rps21-ps1ribosomal protein S21, pseudogene 15158670141158670484Rat
41373048LOC120103386U6 spliceosomal RNA5158672996158673102Rat
1302954Spata21spermatogenesis associated 215158676224158701567Rat
1560286Szrd1SUZ RNA binding domain containing 15158701753158726276Rat
402461367LOC134487027uncharacterized LOC1344870275158729925158734096Rat
1304787Fbxo42F-box protein 425158734165158792560Rat
402434988LOC134487028uncharacterized LOC1344870285158741936158749132Rat
41150313LOC120103024ciliogenesis and planar polarity effector 2-like5158798246158806187Rat
1561421Cplane2ciliogenesis and planar polarity effector complex subunit 25158798503158799451Rat
11372222LOC108351054uncharacterized LOC1083510545158810365158824613Rat
1304766Arhgef19Rho guanine nucleotide exchange factor 195158818840158837196Rat
1307204Epha2Eph receptor A25158888629158917100Rat
2321550Rps27a-ps2ribosomal protein S27a, pseudogene 25158937957158938495Rat
1590955Fam131cfamily with sequence similarity 131, member C5158957444158973773Rat
68435Clcnkachloride voltage-gated channel Ka5158974190158989275Rat
628639Clcnkbchloride voltage-gated channel Kb5158993073159005618Rat
62021Hspb7heat shock protein family B (small) member 75159010759159014245Rat
1566083Srarpsteroid receptor associated and regulated protein5159023949159028053Rat
41131608Trnap-agg71transfer RNA proline (anticodon AGG) 715159025558159025630Rat
1307143Zbtb17zinc finger and BTB domain containing 175159036482159057580Rat
1589867Spenspen family transcriptional repressor5159058258159131789Rat
1359551Fblim1filamin binding LIM protein 15159167004159198578Rat
1566169Tmem82transmembrane protein 825159210531159214462Rat
402058056LOC134487029uncharacterized LOC1344870295159210777159211795Rat
1359157Slc25a34solute carrier family 25, member 345159215120159219892Rat
1307005Plekhm2pleckstrin homology and RUN domain containing M25159222620159261666Rat
1311815Ddi2DNA damage inducible 1 homolog 25159272625159318365Rat
1308424Agmatagmatinase5159326680159357300Rat
1359395Dnajc16DnaJ heat shock protein family (Hsp40) member C165159355279159389267Rat
2548Cela2achymotrypsin like elastase 2A5159409900159420282Rat
1308379Ctrcchymotrypsin C5159430333159439557Rat
1307585Efhd2EF-hand domain family, member D25159443959159459993Rat
41372683LOC120103027uncharacterized LOC1201030275159452187159459655Rat
1563444Fhad1forkhead associated phosphopeptide binding domain 15159474111159593455Rat
1565452Tmem51transmembrane protein 515159608865159658918Rat
1359147Kaznkazrin, periplakin interacting protein5159675803160666084Rat
402429599LOC134487032uncharacterized LOC1344870325159721632159725858Rat
402152061LOC134487033uncharacterized LOC1344870335159865973159867375Rat
402314808LOC134487030uncharacterized LOC1344870305159928284159942237Rat
402179432LOC134479045uncharacterized LOC1344790455160111554160119363Rat
402159161LOC134479046uncharacterized LOC1344790465160283576160287623Rat
7556798LOC102556543uncharacterized LOC1025565435160369936160401263Rat
41390844LOC120103134uncharacterized LOC1201031345160376983160383961Rat
402310451LOC134487031large ribosomal subunit protein uL5-like5160626721160663858Rat
1594531Prdm2PR/SET domain 25160704396160815184Rat
9275519LOC103692503uncharacterized LOC1036925035160710213160722513Rat
41343775LOC120103347small nucleolar RNA SNORA175160807298160807446Rat
2324274Rps20-ps11ribosomal protein S20, pseudogene 115160825066160825584Rat
1587379Tuba1a-ps1tubulin, alpha 1A, pseudogene 15160862294160864029Rat
61819Pdpnpodoplanin5160884995160919112Rat
41178188Mrps18c-ps1mitochondrial ribosomal protein S18C, pseudogene 15160937134160937553Rat
11357843LOC108351056uncharacterized LOC1083510565160964037160969441Rat
1311416Lrrc38leucine rich repeat containing 385160968790160990871Rat
1588644Pramef27PRAME family member 275161036419161043774Rat
1564061Pramef8PRAME family member 85161061444161077222Rat
40956350LOC120103184uncharacterized LOC1201031845161085873161125811Rat
1565680Oog1oogenesin 15161124509161127429Rat
11425965Oog1l1oogenesin 1 like 15161155896161163390Rat
1587378Pramef5PRAME family member 55161188489161191013Rat
1588616Oog2l-ps1oogenesin 2 like, pseudogene 15161199577161202417Rat
1587479Klf4-ps1Kruppel like factor 4, pseudogene 15161204268161258448Rat
2324757Hspa8-ps14heat shock protein family A (Hsp70) member 8, pseudogene 145161218088161220200Rat
1565870Oog3oogenesin 35161227831161230515Rat
11422918Oog1-ps3oogenesin 1, pseudogene 35161258955161262038Rat
9144788LOC103692410uncharacterized LOC1036924105161282176161286707Rat
40938591LOC120103107PRAME family member 12-like5161293121161295675Rat
1306186Oog3l1oogenesin 3 like 15161358296161364877Rat
1587447Pramef17PRAME family member 175161422477161426084Rat
1561813Pramef25PRAME family member 255161440744161450758Rat
1587437Pramef20PRAME family member 205161454398161458874Rat
1587431Pramef12PRAME family member 125161476048161487195Rat
1587426Cfap107cilia and flagella associated protein 1075161495655161514751Rat
7240728LOC101241876ubiquitin-conjugating enzyme E2H pseudogene5161505920161507662Rat
1563257Aadacl3arylacetamide deacetylase-like 35161525452161535485Rat
1584908Pkm-ps9pyruvate kinase M1/2, pseudogene 95161611208161616608Rat
9461644Rpl9l3ribosomal protein L9 like 35161614746162813117Rat
1593379Rps4x-ps4ribosomal protein S4, X-linked, pseudogene 45161614764161615658Rat
1308878Aadacl4fm1AADACL4 family member 15161640133161649744Rat
1563334Aadacl4fm2AADACL4 family member 25161707170161718664Rat
1565761Aadacl4arylacetamide deacetylase-like 45161797029161807851Rat
1559644Aadacl4fm3AADACL4 family member 35161846218161884648Rat
1587396Aadacl4fm3l1AADACL4 family member 3 like 15161899569161943434Rat
41325105Slc50a1-ps1solute carrier family 50 member 1, pseudogene 15161935924161937653Rat
40938168LOC120103322U2 spliceosomal RNA5162014399162014546Rat
41252684LOC120103202U1 spliceosomal RNA5162020171162020334Rat
7688236LOC102550246uncharacterized LOC1025502465162027877162030856Rat
1305584Dhrs3dehydrogenase/reductase 35162031853162065655Rat
1308403Vps13dvacuolar protein sorting 13 homolog D5162113732162339121Rat
7497539Rpl36-ps2ribosomal protein L36, pseudogene5162339056162348317Rat
621238Tnfrsf1bTNF receptor superfamily member 1B5162356250162387411Rat
3879Tnfrsf8TNF receptor superfamily member 85162406387162451620Rat
2319953Zfp54-ps1zinc finger protein 54, pseudogene 15162543922162547200Rat
9212267Rex2l5reduced expression 2 like 55162572842162580240Rat
7623967Rex2l4reduced expression 2 like 45162695137162730581Rat
41185038LOC120103190U6 spliceosomal RNA5162699035162699141Rat
7603077Csnk1g3-ps3casein kinase 1, gamma 3, pseudogene 35162743051162745347Rat
1586278Rex2l1-ps1reduced expression 2 like 1, pseudogene 15162746920162761746Rat
2319680Zfp34zinc finger protein 345162776433162797153Rat
6484979Zfp715-ps3zinc finger protein 715, pseudogene 35162862075162884006Rat
6499833Csnk1g3-ps2casein kinase 1, gamma 3, pseudogene 25162885933162888020Rat
1586256Rex2reduced expression 25162907599162938290Rat
41309319LOC120103192U6 spliceosomal RNA5162944863162944969Rat
41208288Envl-ps9MLV-related proviral Env polyprotein-like, pseudogene 95162950595162951914Rat
41054755LOC120103207U6 spliceosomal RNA5163040494163040600Rat
41358647Csnk1g3-ps4casein kinase 1, gamma 3, pseudogene 45163059925163063205Rat
1598209Zfp534l1zinc finger protein 534 like 15163063343163082695Rat
41014938Rex2l6reduced expression 2 like 65163131302163152456Rat
41187377LOC120103211U6 spliceosomal RNA5163166686163166792Rat
402341441LOC134487034casein kinase I-like5163173228163181692Rat
1586249Rex2l2reduced expression 2 like 25163183186163202283Rat
41051487Gzfpx-ps1gastrula zinc finger protein XlCGF49.1-like, pseudogene 15163202416163211478Rat
1625998Vom2r-ps78vomeronasal 2 receptor, pseudogene 785163255453163255656Rat
41262442LOC120103205U6 spliceosomal RNA5163280163163280269Rat
41345120Csnk1g3-ps6casein kinase 1, gamma 3, pseudogene 65163286291163289524Rat
40962626Rex2l1reduced expression 2 like 15163289671163312101Rat
11425502Mzf1-ps1myeloid zinc finger 1, pseudogene 15163340519163359035Rat
1561413Zfp534l2zinc finger protein 534 like 25163366482163404562Rat
402181575LOC134487035malate dehydrogenase, mitochondrial-like5163378956163381410Rat
40937261LOC120103200U6 spliceosomal RNA5163476385163476491Rat
1565622Rex2l3reduced expression 2 like 35163480797163545887Rat
1586231Zfp933zinc finger protein 9335163548058163570132Rat
1587376Miipmigration and invasion inhibitory protein5163575689163582739Rat
628843Mfn2mitofusin 25163587463163617363Rat
402448343LOC134487036uncharacterized LOC1344870365163618516163619382Rat
621382Plod1procollagen-lysine, 2-oxoglutarate 5-dioxygenase 15163623847163650737Rat
13053502510039O18RiklRIKEN cDNA 2510039O18 gene like5163655082163661346Rat
3194Nppbnatriuretic peptide B5163699955163701314Rat
3193Nppanatriuretic peptide A5163712184163713493Rat
1305379Clcn6chloride voltage-gated channel 65163715593163748301Rat
1309952Mthfrmethylenetetrahydrofolate reductase5163748346163768141Rat
9312074LOC103692509NHP2-like protein 1 pseudogene5163769320163770364Rat
7658417C5h1orf167similar to human chromosome 1 open reading frame 1675163770495163788791Rat
1359346Agtrapangiotensin II receptor-associated protein5163790565163802174Rat
7646732LOC102551534uncharacterized LOC1025515345163802267163809476Rat
7635238LOC102551596uncharacterized LOC1025515965163810675163820252Rat
1585098Draxindorsal inhibitory axon guidance protein5163813308163846609Rat
11399174Rpl35a-ps7ribosomal protein L35A, pseudogene 75163826826163827281Rat
1307499Mad2l2mitotic arrest deficient 2 like 25163846678163859851Rat
620418Fbxo6F-box protein 65163859909163865693Rat
1562463Fbxo44F-box protein 445163866517163875928Rat
621751Fbxo2F-box protein 25163876079163881508Rat
11370875LOC108351059uncharacterized LOC1083510595163925853163931975Rat
1305820Disp3dispatched RND transporter family member 35163955160164003980Rat
7568401LOC102551951uncharacterized LOC1025519515164073564164097281Rat
1309588Ubiad1UbiA prenyltransferase domain containing 15164139714164167777Rat
68371Mtormechanistic target of rapamycin kinase5164167985164277438Rat
7553363Angptl7angiopoietin like 75164215223164220408Rat
41178027LOC120103237U6 spliceosomal RNA5164275237164275318Rat
1593248Exosc10exosome component 105164278414164302067Rat
620796Srmspermidine synthase5164309002164312203Rat
620214Masp2MBL associated serine protease 25164319017164332686Rat
1310906TardbpTAR DNA binding protein5164330452164348435Rat
41325536Snora21small nucleolar RNA, H/ACA box 215164341679164341814Rat
1585063Cirozciliated left-right organizer protein containing ZP-N domains5164358333164393758Rat
1583785Rpl14-ps2ribosomal protein L14, pseudogene 25164366502164367290Rat
9103835LOC103692510uncharacterized LOC1036925105164460149164466232Rat
1585054Rpl36-ps9ribosomal protein L36, pseudogene5164476267164476622Rat
1563533Casz1castor zinc finger 15164527083164677037Rat
40976780LOC120103035uncharacterized LOC1201030355164595838164600610Rat
41005014LOC120103036uncharacterized LOC1201030365164669457164670995Rat
68336Pex14peroxisomal biogenesis factor 145164682876164819352Rat
620334DffaDNA fragmentation factor subunit alpha5164823807164836729Rat
2383Cortcortistatin5164843682164845796Rat
5128728Cenpscentromere protein S5164847009164856705Rat
1583832Pgdphosphogluconate dehydrogenase5164865830164882029Rat
621520Kif1bkinesin family member 1B5164890778165025848Rat
402127720LOC134487037uncharacterized LOC1344870375164942375164950772Rat
7740951LOC102547502uncharacterized LOC1025475025165033236165037072Rat
1304738Ube4bubiquitination factor E4B5165049897165153572Rat
1562168Rbp7retinol binding protein 75165169700165177427Rat
1310996Nmnat1nicotinamide nucleotide adenylyltransferase 15165193301165211213Rat
402287224LOC134479087uncharacterized LOC1344790875165211069165212236Rat
1309253Lzicleucine zipper and CTNNBIP1 domain containing5165211359165224569Rat
1562749Ctnnbip1catenin, beta-interacting protein 15165245019165293994Rat
1306458Clstn1calsyntenin 15165314128165377627Rat
1310990Pik3cdphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta5165377994165426620Rat
41104095LOC120103039uncharacterized LOC1201030395165404657165424011Rat
1583947Tmem201transmembrane protein 2015165449270165471901Rat
1583942Slc25a33solute carrier family 25 member 335165478070165518186Rat
7665827LOC102548220uncharacterized LOC1025482205165504800165512834Rat
11081182Rps2-ps44ribosomal protein S2, pseudogene 445165598096165599951Rat
40999891LOC120103040uncharacterized LOC1201030405165610938165619765Rat
7685779LOC102548366uncharacterized LOC1025483665165617427165625058Rat
1309319Spsb1splA/ryanodine receptor domain and SOCS box containing 15165641255165701482Rat
41076681LOC120103041uncharacterized LOC1201030415165654303165665060Rat
402116893LOC134487038uncharacterized LOC1344870385165703896165707775Rat
1306562H6pdhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)5165717456165753158Rat
9106117LOC103692514uncharacterized LOC1036925145165759259165819043Rat
2325584Mir34amicroRNA 34a5165815952165816053Rat
1311096Gpr157G protein-coupled receptor 1575165833651165849376Rat
68328Slc2a5solute carrier family 2 member 55165857412165892928Rat
41108681Trnap-agg69transfer RNA proline (anticodon AGG) 695165876010165876082Rat
402124085LOC134479047integumentary mucin C.1-like5165893327165903457Rat
1583902Slc2a7solute carrier family 2 member 75165907721165927277Rat
70516Ca6carbonic anhydrase 65165941028165959566Rat
40957798LOC120103042uncharacterized LOC1201030425165983679165986526Rat
402122025LOC134487039uncharacterized LOC1344870395165987784165995023Rat
2553Eno1enolase 15166002867166014252Rat
402294286LOC134487041uncharacterized LOC1344870415166039783166040758Rat
629475Rerearginine-glutamic acid dipeptide repeats5166048770166380559Rat
402108388LOC134487042uncharacterized LOC1344870425166050835166060485Rat
11484356LOC108351064small nuclear ribonucleoprotein G pseudogene5166091212166091561Rat
41403641LOC120103044uncharacterized LOC1201030445166097240166108972Rat
7489027Mir6332microRNA 63325166120210166120330Rat
402156591LOC134487040uncharacterized LOC1344870405166219432166240650Rat
11382308Lyrm1-ps1LYR motif containing 1, pseudogene 15166268394166273109Rat
708502Slc45a1solute carrier family 45, member 15166388115166412183Rat
41352911LOC120103185uncharacterized LOC1201031855166493472166497217Rat
11393480LOC108351065uncharacterized LOC1083510655166532483166542618Rat
41290417LOC120103045uncharacterized LOC1201030455166535698166554096Rat
7562865LOC102556220uncharacterized LOC1025562205166581526166591505Rat
1307599Errfi1ERBB receptor feedback inhibitor 15166606841166620124Rat
7515381LOC102556316uncharacterized LOC1025563165166618928166630783Rat
621808Park7Parkinsonism associated deglycase5166636551166659825Rat
1598208Tnfrsf9TNF receptor superfamily member 95166664494166690834Rat
402395473LOC134479048uncharacterized LOC1344790485166701857166704258Rat
41094677Rnvu1-33RNA, variant U1 small nuclear 335166708579166708736Rat
7752004LOC102556501uncharacterized LOC1025565015166709675166725305Rat
3930Uts2urotensin 25166725471166739063Rat
621581Per3period circadian regulator 35166740914166778243Rat
402165526LOC134487044uncharacterized LOC1344870445166778371166781801Rat
61880Vamp3vesicle-associated membrane protein 35166780927166791522Rat
1562703Camta1calmodulin binding transcription activator 15166791639167639502Rat
402011035LOC134487045uncharacterized LOC1344870455167115692167123541Rat
402344390LOC134487043uncharacterized LOC1344870435167130292167133158Rat
41065227LOC120103136uncharacterized LOC1201031365167177404167199061Rat
41234809LOC120103137uncharacterized LOC1201031375167513773167520331Rat
2323948Rps7-ps23ribosomal protein S7, pseudogene 235167643660167644326Rat
1307731Dnajc11DnaJ heat shock protein family (Hsp40) member C115167724776167770032Rat
1308109Thap3THAP domain containing 35167771209167776878Rat
1308145Phf13PHD finger protein 135167777303167784077Rat
41032543Rps25-ps9ribosomal protein S25, pseudogene 95167794862167795366Rat
1305863Klhl21kelch-like family member 215167797621167806276Rat
1311581Zbtb48zinc finger and BTB domain containing 485167807965167816332Rat
61891Tas1r1taste 1 receptor member 15167816566167829136Rat
1566167Nol9nucleolar protein 95167829249167849364Rat
1303132Plekhg5pleckstrin homology and RhoGEF domain containing G55167860730167904229Rat
1598206Tnfrsf25TNF receptor superfamily member 255167904377167909052Rat
620652Espnespin5167909271167943168Rat
62082Hes2hes family bHLH transcription factor 25167947948167964660Rat
402148161LOC134487047uncharacterized LOC1344870475167967221167968711Rat
628856Acot7acyl-CoA thioesterase 75167969284168062033Rat
1564170Gpr153G protein-coupled receptor 1535168064134168075697Rat
621339Hes3hes family bHLH transcription factor 35168076337168082270Rat
621618Icmtisoprenylcysteine carboxyl methyltransferase5168084487168097519Rat
1586262Rnf207ring finger protein 2075168098074168112585Rat
621189Rpl22ribosomal protein L225168114432168126114Rat
1582725Chd5chromodomain helicase DNA binding protein 55168130851168181705Rat
41199189LOC120103139uncharacterized LOC1201031395168134917168153562Rat
61828Kcnab2potassium voltage-gated channel subfamily A regulatory beta subunit 25168182228168270760Rat
402187674LOC134487046small ribosomal subunit protein eS27-like5168247689168248050Rat
1560172Nphp4nephrocystin 45168270522168356393Rat
402154648LOC134479049uncharacterized LOC1344790495168413354168414717Rat
7592969LOC102549399uncharacterized LOC1025493995168537328168567013Rat
402285235LOC134479050uncharacterized LOC1344790505168626337168628354Rat
402229852LOC134479052uncharacterized LOC1344790525168651283168653681Rat
402314632LOC134479051uncharacterized LOC1344790515168652046168668018Rat
7559930LOC102549463uncharacterized LOC1025494635168656202168667909Rat
41139699LOC120102800uncharacterized LOC1201028005168695501168699438Rat
402244571LOC134479053uncharacterized LOC1344790535168803494168805122Rat
1583705Rps15l1ribosomal protein S15 like 15168817178168817609Rat
7567711LOC102550429uncharacterized LOC1025504295169154264169179952Rat
1590138Ajap1adherens junctions associated protein 15169190477169302938Rat
402348207LOC134479054uncharacterized LOC1344790545169215925169221102Rat
41074338LOC120102801uncharacterized LOC1201028015169480349169481636Rat
40995206LOC120103047uncharacterized LOC1201030475169592122169607629Rat
402294193LOC134479055uncharacterized LOC1344790555169608297169622200Rat
402454231LOC134479056uncharacterized LOC1344790565169617354169622503Rat
40962925LOC120103342small nucleolar RNA SNORA175169712050169712183Rat
7751891LOC102551503uncharacterized LOC1025515035169773126169785523Rat
1304567C5h1orf174similar to human chromosome 1 open reading frame 1745169798004169802449Rat
620335DffbDNA fragmentation factor subunit beta5169804873169817157Rat
708505Cep104centrosomal protein 1045169817383169849681Rat
1308599Lrrc47leucine rich repeat containing 475169852926169862598Rat
1564257Smim1small integral membrane protein 1 (Vel blood group)5169861751169867070Rat
41047818LOC120103048uncharacterized LOC1201030485169867454169869929Rat
1587099Ccdc27coiled-coil domain containing 275169867706169881820Rat
7631678LOC102551562uncharacterized LOC1025515625169881905169905818Rat
402019689LOC134479057uncharacterized LOC1344790575169888212169894165Rat
1307083Tp73tumor protein p735169903801169988075Rat
1359137Wrap73WD repeat containing, antisense to TP735169988538170004071Rat
1590079Tprg1ltumor protein p63 regulated 1-like5170004577170007784Rat
621188Megf6multiple EGF-like-domains 65170020699170121557Rat
1588981Arhgef16Rho guanine nucleotide exchange factor 165170126573170148624Rat
2324431Prdm16PR/SET domain 165170162275170486371Rat
7704566LOC102555433uncharacterized LOC1025554335170355772170357231Rat
41154709LOC120103049uncharacterized LOC1201030495170398708170401501Rat
1359657Actrt2actin-related protein T25170518470170519870Rat
7643067LOC102555491uncharacterized LOC1025554915170579500170594545Rat
402071946LOC134479058uncharacterized LOC1344790585170615839170620840Rat
1304840Ttc34tetratricopeptide repeat domain 345170693410170711215Rat
1309299Mmel1membrane metallo-endopeptidase-like 15170713602170744058Rat
1308251Prxl2bperoxiredoxin like 2B5170744953170747556Rat
1310115Tnfrsf14TNF receptor superfamily member 145170768413170776749Rat
621340Hes5hes family bHLH transcription factor 55170804511170807988Rat
628857Pank4pantothenate kinase 45170807744170824478Rat
1304675Plch2phospholipase C, eta 25170826543170885012Rat
1591776Pex10peroxisomal biogenesis factor 105170910136170915302Rat
1306324Rer1retention in endoplasmic reticulum sorting receptor 15170916643170929073Rat
1359433Morn1MORN repeat containing 15170928086170987219Rat
11448041LOC108351067uncharacterized LOC1083510675170959711170967159Rat
1565591SkiSki proto-oncogene5170995851171064957Rat
9262356LOC103692526uncharacterized LOC1036925265171072036171080023Rat
1308923Faap20FA core complex associated protein 205171083328171097599Rat
3399Prkczprotein kinase C, zeta5171101774171212694Rat
7499193Pigp-ps1phosphatidylinositol glycan anchor biosynthesis, class P, pseudogene 15171215982171216369Rat
402357811LOC134479059uncharacterized LOC1344790595171216622171220927Rat
61901Gabrdgamma-aminobutyric acid type A receptor subunit delta5171240813171252709Rat
2324110Cfap74cilia and flagella associated protein 745171252907171328351Rat
2318502Tmem52transmembrane protein 525171330948171332704Rat
2718Gnb1G protein subunit beta 15171357778171424489Rat
41347628LOC120103052uncharacterized LOC1201030525171377287171400851Rat
1642420NadkNAD kinase5171427973171458586Rat
1597193Atp5pd-ps1ATP synthase peripheral stalk subunit d, pseudogene 15171446585171447176Rat
401987654LOC134487048uncharacterized LOC1344870485171461626171464526Rat
1309076Slc35e2bsolute carrier family 35, member E2B5171465222171493317Rat
628604Cdk11bcyclin-dependent kinase 11B5171495042171521143Rat
11489274Rpl27al10ribosomal protein L27A like 105171515774171516289Rat
620201Mmp23matrix metallopeptidase 235171521905171525007Rat
1359469Mib2MIB E3 ubiquitin protein ligase 25171526037171542479Rat
1583706Eef1g-ps6eukaryotic translation elongation factor 1 gamma, pseudogene 65171546947171548530Rat
41073946Trnas-aga54transfer RNA serine (anticodon AGA) 545171558460171558541Rat
1589420Fndc10fibronectin type III domain containing 105171581960171584519Rat
1307854Ssu72SSU72 homolog, RNA polymerase II CTD phosphatase5171595919171625675Rat
40993462LOC120103227U6 spliceosomal RNA5171613864171613965Rat
2318117Tmem240transmembrane protein 2405171625830171653836Rat
1305964Atad3aATPase family, AAA domain containing 3A5171632545171652725Rat
7575268Atad3aosATPase family, AAA domain containing 3A, opposite strand5171652867171653836Rat
1311476Vwa1von Willebrand factor A domain containing 15171659694171664880Rat
1588243Tmem278transmembrane protein 2785171673319171676143Rat
1588232Ankrd65ankyrin repeat domain 655171680597171682854Rat
1588219Mrpl20mitochondrial ribosomal protein L205171690664171695728Rat
1309149Ccnl2cyclin L25171698951171711037Rat
402294999LOC134487049uncharacterized LOC1344870495171709144171709909Rat
402303901LOC134487050uncharacterized LOC1344870505171712110171717165Rat
1303211Aurkaip1aurora kinase A interacting protein 15171717349171719123Rat
1359356Mxra8matrix remodeling associated 85171731153171735879Rat
620632Dvl1dishevelled segment polarity protein 15171738911171750967Rat
620539Tas1r3taste 1 receptor member 35171750937171754993Rat
1359656Cptpceramide-1-phosphate transfer protein5171757181171761271Rat
1306841Ints11integrator complex subunit 115171761370171779883Rat
1559560Pusl1pseudouridine synthase like 15171773284171782893Rat
1310711Acap3ArfGAP with coiled-coil, ankyrin repeat and PH domains 35171783382171797709Rat
1359523Ube2j2ubiquitin-conjugating enzyme E2, J25171815607171830037Rat
1307059C1qtnf12C1q and TNF related 125171833854171838229Rat
402019006LOC134487051uncharacterized LOC1344870515171846664171862270Rat
41034022LOC120103288small nucleolar RNA SNORA485171847736171847879Rat
1309558B3galt6Beta-1,3-galactosyltransferase 65171866428171868564Rat
621521Sdf4stromal cell derived factor 45171868591171885827Rat
3920Tnfrsf4TNF receptor superfamily member 45171889134171891824Rat
1565872Tnfrsf18TNF receptor superfamily member 185171901734171904578Rat
1560839Ttll10tubulin tyrosine ligase like 105171912371171937733Rat
10059730LOC106182250uncharacterized LOC1061822505171928488171935853Rat
2325537Mir429microRNA 4295171929682171929766Rat
4888608Mir3548microRNA 35485171930704171930823Rat
2325426Mir200amicroRNA 200a5171930717171930805Rat
2325552Mir200bmicroRNA 200b5171931495171931589Rat
1311517C5h1orf159similar to human chromosome 1 open reading frame 1595171983700172001373Rat
1587009Rnf223ring finger protein 2235172005566172008456Rat
2323751Ssbp2-ps1single-stranded DNA binding protein 2, pseudogene 15172022942172028770Rat
2067Agrnagrin5172031528172064429Rat
1310312Isg15ISG15 ubiquitin-like modifier5172066369172067656Rat
1304931Perm1PPARGC1 and ESRR induced regulator, muscle 15172082249172087542Rat
1311019Plekhn1pleckstrin homology domain containing N15172087524172095566Rat
708444Klhl17kelch-like family member 175172095701172101945Rat
1309387Noc2lNOC2-like nucleolar associated transcriptional repressor5172102369172114168Rat
1310271Samd11sterile alpha motif domain containing 115172113900172142026Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10517D5Arb142575159420190159420447Ratregion
11002D5Mit151425163713548163713690Ratregion
34248D5Mgh91345170842632170842766Ratregion
34467D5Mgh161355166600112166600247Ratregion
36207D5Rat471195162039559162039678Ratregion
36426D5Rat511245171330365171330489Ratregion
36628D5Rat481325165132197165132329Ratregion
35823D5Rat501595172128870172129029Ratregion
40654D5Rat1772095159366269159366478Ratregion
40740D5Rat1812175164454229164454446Ratregion
39168D5Rat992415156396728156396969Ratregion
39406D5Rat2052275160071170160071397Ratregion
42767D5Rat2431395165261669165261808Ratregion
42768D5Rat2602375163707566163707803Ratregion
42770D5Rat2451415167181623167181764Ratregion
41492D5Rat1781635160111176160111339Ratregion
41044D8Rat1422045164556489164556693Ratregion
41070D5Rat1801435164618285164618428Ratregion
41798D5Rat2461245171146414171146538Ratregion
44003D5Got1021365158842433158842569Ratregion
44004D5Got901295159582723159582852Ratregion
44011D5Wox12685165233987165234255Ratregion
44012D5Got1061635164381413164381576Ratregion
44015D5Got1161495169334391169334540Ratregion
44018D5Got1201315170738117170738248Ratregion
69520D5Uwm441125156508119156508231Ratregion
69522D5Uwm452005157268597157268797Ratregion
69529D5Uwm492535165193758165194011Ratregion
69550D5Uwm501505167731001167731151Ratregion
625815D5Got931265157368644157368770Ratregion
61299D5Mco102455166764253166764498Ratregion
1627786D5Cebr12345157964757157964991Ratregion
1629746D5Got2941005167862596167862696Ratregion
1640372D5Got2522045172081048172081252Ratregion
1634858D5Got2632415158911826158912067Ratregion
5025976RH1304246385163700508163701146Ratregion
5035050UniSTS:2596155305170804636170805166Ratregion
5029635BF3864511915171597426171597617Ratregion
5032367AU023234965161077081161077177Ratregion
5029817BF3875231935171366920171367113Ratregion
5030115BE1105382485166496222166496470Ratregion
5057492AA8190202885171718683171718971Ratregion
5054453RH1432331905168104914168105104Ratregion
5058474BE0962222825163966623163966905Ratregion
5050498RH1340912025168075497168075699Ratregion
5043990RH1303472485171779378171779626Ratregion
5047786RH1325277275158505861158506588Ratregion
5046994RH1320733015163859350163859651Ratregion
5039596RH1277961895172031689172031878Ratregion
5039728RH1278731795166836285166836464Ratregion
5040108RH1280941965158534420158534616Ratregion
5072464RH1368641845156419175156419359Ratregion
5074706RH1381716945168184634168185328Ratregion
5077090RH1395544485171241818171242266Ratregion
5061814AW5337091545171984212171984366Ratregion
5067536AU0476862905166528944166529234Ratregion
5070043RH944351915162406390162406581Ratregion
5068782AU0469361775168165387168165564Ratregion
5069442AU0464951795165261670165261849Ratregion
5070067RH944521535163713242163713395Ratregion
5062006BI2881001655164790475164790640Ratregion
5060218BI2797923315158993206158993537Ratregion
5062230BE1063891955165642869165643064Ratregion
5062944AA9556731355171703000171703135Ratregion
5082183BI2803865455163712755163713300Ratregion
5087376BM3896261525169781579169781731Ratregion
5089845AU0493971875158957057158957244Ratregion
5089967AU0494702335162417537162417770Ratregion
5080908RH1418522775171526710171526987Ratregion
5503031MARC_65458-65459:1186500885:37375163631059163631796Ratregion
5503364D4Mon541685171814634171814802Ratregion
5504492PMC23157P14505171244387171244837Ratregion
5504286D1S1828E1165170493573170493689Ratregion
5505273Tprgl7625170005570170006332Ratregion
5502158MARC_7131-7132:996687522:14625164269230164269692Ratregion
5501363RH159074015165361774165362175Ratregion
5501578RH41831815158701791158701872Ratregion
5502152MARC_6491-6492:996689696:16715156887857156888528Ratregion
Position Markers

Flank 1: (D5Rat99)
Rat AssemblyChrPosition (strand)Source
GRCr85156,396,728 - 156,396,969 (+)Marker Load Pipeline
mRatBN7.25151,113,452 - 151,113,693 (+)MAPPER
Rnor_6.05157,319,671 - 157,319,911NCBI
Rnor_5.05161,060,798 - 161,061,038UniSTS
RGSC_v3.45157,691,737 - 157,691,978RGD
RGSC_v3.45157,691,738 - 157,691,978UniSTS
Celera5149,499,210 - 149,499,450UniSTS
RGSC_v3.15157,701,777 - 157,702,017RGD
RH 3.4 Map51033.5RGD
RH 3.4 Map51033.5UniSTS
RH 2.0 Map51026.6RGD
SHRSP x BN Map589.7999RGD
Peak: (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,165,494 - 161,165,651 (+)MAPPER
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.15167,854,767 - 167,854,925RGD
RH 3.4 Map51122.3RGD
RH 3.4 Map51122.3UniSTS
RH 2.0 Map51103.8RGD
Cytogenetic Map5 RGD
Flank 2: (D5Rat185)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,465,061 - 164,465,185 (+)MAPPER
Rnor_6.05171,194,040 - 171,194,163NCBI
Rnor_5.05174,682,883 - 174,683,006UniSTS
RGSC_v3.45170,688,614 - 170,688,737UniSTS
RGSC_v3.45170,688,613 - 170,688,737RGD
Celera5162,679,245 - 162,679,368UniSTS
RGSC_v3.15170,698,877 - 170,699,258RGD
FHH x ACI Map5101.9UniSTS
FHH x ACI Map5101.9RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
631498Bp100Blood pressure QTL 1004.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5163701314163712184Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Swd2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type Intercross  
qtl_general Region covered by the QTL shows synteny with mouse chromosome 4 (58-79 cM) and human 1pter-p32. 1302436