SLC66A1 (solute carrier family 66 member 1)

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Gene: SLC66A1 (solute carrier family 66 member 1) Chlorocebus sabaeus

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Symbol:

SLC66A1

Name:

solute carrier family 66 member 1

RGD ID:

18498655

Description:

ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); INVOLVED IN intracellular amino acid homeostasis (inferred); L-arginine transmembrane transport (inferred); L-histidine transmembrane transport (inferred); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); lysosomal membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysosomal amino acid transporter 1 homolog; PQ loop repeat containing 2; PQLC2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	113,217,379 - 113,234,176 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	113,216,715 - 113,233,964 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	2,925,128 - 2,941,705 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ISO)

chromosome 1p36 deletion syndrome (ISO)

congenital disorder of glycosylation Ir (ISO)

cystinosis (ISO)

hyperprolinemia type 2 (ISO)

Parkinson's disease 6 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular amino acid homeostasis (IEA)

L-arginine transmembrane transport (IEA)

L-histidine transmembrane transport (IEA)

L-lysine transmembrane transport (IEA)

lysine transport (IEA)

Cellular Component

intracellular membrane-bounded organelle (IEA)

lysosomal membrane (IEA)

membrane (IEA)

organelle membrane (IEA)

Molecular Function

basic amino acid transmembrane transporter activity (ISO)

L-arginine transmembrane transporter activity (IEA)

L-histidine transmembrane transporter activity (IEA)

L-lysine transmembrane transporter activity (IEA)

protein binding (ISO)

References

Genomics

Comparative Map Data

SLC66A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	113,217,379 - 113,234,176 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	113,216,715 - 113,233,964 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	2,925,128 - 2,941,705 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SLC66A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	19,312,326 - 19,334,463 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	19,312,326 - 19,329,300 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	19,638,820 - 19,658,922 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	19,511,327 - 19,528,381 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	19,384,125 - 19,404,227	NCBI
Celera	1	17,965,741 - 17,982,808 (+)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	17,885,165 - 17,902,100 (+)	NCBI		HuRef
CHM1_1	1	19,748,043 - 19,765,096 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	19,135,861 - 19,158,016 (+)	NCBI		T2T-CHM13v2.0

Slc66a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	139,021,341 - 139,038,025 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	139,021,340 - 139,038,019 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	139,294,030 - 139,310,760 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	139,294,029 - 139,310,708 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	138,853,920 - 138,866,615 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	138,570,606 - 138,582,754 (-)	NCBI		MGSCv36	mm8
Celera	4	141,084,526 - 141,097,214 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.63	NCBI

Slc66a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	156,821,084 - 156,835,558 (-)	NCBI		GRCr8
mRatBN7.2	5	151,537,870 - 151,552,259 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	151,542,376 - 151,552,259 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	154,240,875 - 154,250,750 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	156,015,223 - 156,025,098 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,996,194 - 156,006,086 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	157,744,945 - 157,759,370 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	157,745,490 - 157,759,322 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	161,485,179 - 161,499,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	158,087,137 - 158,097,572 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	158,097,687 - 158,106,359 (-)	NCBI
Celera	5	149,924,109 - 149,930,042 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Slc66a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	16,770 - 26,189 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	17,459 - 22,259 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC66A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	207,786,098 - 207,803,143 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	206,902,431 - 206,919,927 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	18,270,882 - 18,288,387 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	19,317,244 - 19,333,926 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	19,317,244 - 19,333,926 (+)	Ensembl	panpan1.1		panPan2

SLC66A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	79,318,200 - 79,334,047 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	79,318,345 - 79,320,885 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	75,831,339 - 75,848,952 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	79,940,414 - 79,956,745 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	79,939,336 - 79,956,723 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	76,701,369 - 76,717,652 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	77,711,001 - 77,727,285 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	78,780,655 - 78,798,382 (-)	NCBI		UU_Cfam_GSD_1.0

Slc66a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	39,748,339 - 39,763,537 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	5,576,507 - 5,590,279 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	5,573,175 - 5,588,319 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC66A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	77,761,782 - 77,778,571 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	77,761,861 - 77,778,570 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	71,823,957 - 71,840,716 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Slc66a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	4,457,156 - 4,465,109 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	4,455,843 - 4,466,413 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007980260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007980266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017654 ⟹ ENSCSAP00000017128

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	113,216,715 - 113,233,964 (-)	Ensembl

RefSeq Acc Id:

XM_007980261 ⟹ XP_007978452

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	113,217,685 - 113,234,176 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	2,925,164 - 2,941,705 (+)	NCBI

Sequence:

show sequence

CCTCCAGGCCGGGTCCGCCCCACAAGCGGCGTGGGGGCGGGGCCTGCGGTTCCCGGGGCCGGGC
GGCGGCGCGCGGTCAGCTGACCCGGCGGGCCCTGACCCAGAAGCTGGGCCCTGGCGGCGGATCT
GGACTTGAACCCTTGCTGGCCTCGGAACACCAGCACCTTCCCTCCCGTGCAGACCTGCCTGGCC
GGGGGCCCCTCCTCCACAGCCATGGTCTGGAAGAAACTGGGCTCCCGCAACTTCTCCAGCTGCC
CTAATGGTTCCATCCAGTGGATATGGGATGTGCTGGGTGAATGTGCCCAGGACGGCTGGGATGA
GGCCAGTGTGGGCCTGGGCTTGATCTCCATTCTCTGCTTTGCTGCGTCTACCTTCCCCCAGTTC
ATCAAAGCCTACAAGACGGGCAACATGGACCAGGCGCTGTCCCTGTGGTTCCTCCTGGGCTGGA
TCGGCGGAGACTCCTGCAACCTCATCGGCTCCTTCCTTGCTGACCAGCTGCCCCTGCAGTCCTA
CACAGCTGTGTATTACGTCATGGCAGACCTGGTGATGCTGACGCTGTACTTTTACTACAAGTTC
AGGAAACTCCCCTCTCCATGGGCCCGTTCGGCAGGCACAGCTCCAGCTCCTCCTCTGTGTCCAG
CCCTGGGCTTGGAGCTGGGGAAACGAGGACAAGTCACACAGGCTGCCTCTGCCCCAGCCTTCAG
GAGGAGCAGGAGACAAGTGTCTGCCCCCATCAACTCCATGCTGCTGTTCCTCATGGGGACGGCA
TGCGCCACACCGCTGCTGAGCGCTGCTGGGCCCGTGGCTGCCCCGAGGGAAGGCTTCCGGGGAC
GGGCGCTCCTGTCTGTGGAGCCGGGCAGCAAGCCCTTCACCCGGCAGGAAATCATCGGCTTCGT
CATCGGCTCCGTCTCCAGTGTGTTGTACCTGCTCTCCCGGCTGCCTCAGATCCGCACCAACGCG
CGATGTGGCCTGCCAGCCAGGCTGCAAGAGACCCATGTGTGTCTTGGAGGAGTAGGAGTTCAGG
GGAAGTTCCTCCGGAAGTCCACCCAGGGGATCTCCTACTCGCTGTTCGCGCTGGTGATGCTGGG
GAACACGCTGTATGGGCTGAGCGTGCTGCTCAAAAACCCCGAGGAGGGTCAGAGCGAGGGCAGC
TACTTGCTGCACCACCTCCCCTGGCTTGTGGGCAGCCTGGGCGTGCTGCTGCTCGACACCATCA
TCTCCATCCAGTTCTTGGTGTACAGGCGCAGCGCTGCCGCCTCGGAGCTTGAGCCCCTCCTCCT
CCCCAGCTGACCGAGGCCGGCTGAGCGCAGGAGGACGGGGACCACCGGATGCCACACCAGGCAG
GGGGAGGTGTGGGCAGTGATGGTGCTGCAGCTCTGCATCAGTGTGTGGGCGGCCTCTGGATCCC
CCATGGACCGAACCGTCCCCTCTGGGAACACACCTTCAGGTAGACCCTGAAGCCTCGAGGCCAG
GGCTGAAGCAGAGACCCCAGGGCCTCTCAGGAGACAGGCTGCCCCTCCTACCACCTACCTCATT
CTGCCTACTCACCCCAGGGGCCACAGCTGCAGCCTGCGGGACTCAGGACTGTCCTGTCAACTCC
AGACAACCGAGTAAACGGGCTGGGTGTGGTGTCTCA

hide sequence

RefSeq Acc Id:

XM_007980264 ⟹ XP_007978455

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	113,217,685 - 113,234,176 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	2,925,673 - 2,941,705 (+)	NCBI

Sequence:

show sequence

CCTCCAGGCCGGGTCCGCCCCACAAGCGGCGTGGGGGCGGGGCCTGCGGTTCCCGGGGCCGGGC
GGCGGCGCGCGGTCAGCTGACCCGGCGGGCCCTGACCCAGAAGCTGGGCCCTGGCGGCGGATCT
GGACTTGGCGGCCCGCGCCGGTCTGAGTCACCAGGAGGGAGCTGTGGCTGAGGACGCCGAGGCC
TGGAGTGGGTGGTAGCCCCGAGCCGGGACGCTCCTCCCCCCACATTCTCCCCAGGTCTGCAGGG
ACGAGTACCCACACTGCCTCCTCCCACGCCGTGCTTAGGCCAGTTCATCAAAGCCTACAAGACG
GGCAACATGGACCAGGCGCTGTCCCTGTGGTTCCTCCTGGGCTGGATCGGCGGAGACTCCTGCA
ACCTCATCGGCTCCTTCCTTGCTGACCAGCTGCCCCTGCAGTCCTACACAGCTGTGTATTACGT
CATGGCAGACCTGGTGATGCTGACGCTGTACTTTTACTACAAGTTCAGGAAACTCCCCTCTCCA
TGGGCCCGTTCGGCAGGCACAGCTCCAGCTCCTCCTCTGTGTCCAGCCCTGGGCTTGGAGCTGG
GGAAACGAGGACAAGTCACACAGGCTGCCTCTGCCCCAGCCTTCAGGAGGAGCAGGAGACAAGT
GTCTGCCCCCATCAACTCCATGCTGCTGTTCCTCATGGGGACGGCATGCGCCACACCGCTGCTG
AGCGCTGCTGGGCCCGTGGCTGCCCCGAGGGAAGGCTTCCGGGGACGGGCGCTCCTGTCTGTGG
AGCCGGGCAGCAAGCCCTTCACCCGGCAGGAAATCATCGGCTTCGTCATCGGCTCCGTCTCCAG
TGTGTTGTACCTGCTCTCCCGGCTGCCTCAGATCCGCACCAACGCGCGATGTGGCCTGCCAGCC
AGGCTGCAAGAGACCCATGTGTGTCTTGGAGGAGTAGGAGTTCAGGGGAAGTTCCTCCGGAAGT
CCACCCAGGGGATCTCCTACTCGCTGTTCGCGCTGGTGATGCTGGGGAACACGCTGTATGGGCT
GAGCGTGCTGCTCAAAAACCCCGAGGAGGGTCAGAGCGAGGGCAGCTACTTGCTGCACCACCTC
CCCTGGCTTGTGGGCAGCCTGGGCGTGCTGCTGCTCGACACCATCATCTCCATCCAGTTCTTGG
TGTACAGGCGCAGCGCTGCCGCCTCGGAGCTTGAGCCCCTCCTCCTCCCCAGCTGACCGAGGCC
GGCTGAGCGCAGGAGGACGGGGACCACCGGATGCCACACCAGGCAGGGGGAGGTGTGGGCAGTG
ATGGTGCTGCAGCTCTGCATCAGTGTGTGGGCGGCCTCTGGATCCCCCATGGACCGAACCGTCC
CCTCTGGGAACACACCTTCAGGTAGACCCTGAAGCCTCGAGGCCAGGGCTGAAGCAGAGACCCC
AGGGCCTCTCAGGAGACAGGCTGCCCCTCCTACCACCTACCTCATTCTGCCTACTCACCCCAGG
GGCCACAGCTGCAGCCTGCGGGACTCAGGACTGTCCTGTCAACTCCAGACAACCGAGTAAACGG
GCTGGGTGTGGTGTCTCA

hide sequence

RefSeq Acc Id:

XM_007980265 ⟹ XP_007978456

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	113,217,379 - 113,234,154 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	2,925,128 - 2,941,705 (+)	NCBI

Sequence:

show sequence

CAAGCGGCGTGGGGGCGGGGCCTGCGGTTCCCGGGGCCGGGCGGCGGCGCGCGGTCAGCTGACC
CGGCGGGCCCTGACCCAGAAGCTGGGCCCTGGCGGCGGATCTGGACTTGGCGGCCCGCGCCGGT
CTGAGTCACCAGGAGGGAGCTGTGGCTGAGGACGCCGAGGCCTGGAGTGGGTGGTAGCCCCGAG
CCGGGACGCTCCTCCCCCCACATTCTCCCCAGGTCTGCAGGGACGAGTACCCACACTGCCTCCT
CCCACGCCGTGCTTAGGAACCCTTGCTGGCCTCGGAACACCAGCACCTTCCCTCCCGTGCAGAC
CTGCCTGGCCGGGGGCCCCTCCTCCACAGCCATGGTCTGGAAGAAACTGGGCTCCCGCAACTTC
TCCAGCTGCCCTAATGGTTCCATCCAGTGGATATGGGATGTGCTGGGTGAATGTGCCCAGGACG
GCTGGGATGAGGCCAGTGTGGGCCTGGGCTTGATCTCCATTCTCTGCTTTGCTGCGTCTACCTT
CCCCCAGTTCATCAAAGCCTACAAGACGGGCAACATGGACCAGGCGCTGTCCCTGTGGTTCCTC
CTGGGCTGGATCGGCGGAGACTCCTGCAACCTCATCGGCTCCTTCCTTGCTGACCAGCTGCCCC
TGCAGTCCTACACAGCTGTGTATTACGTCATGGCAGACCTGGTGATGCTGACGCTGTACTTTTA
CTACAAGTTCAGGAAACTCCCCTCTCCATTGTCTGCCCCCATCAACTCCATGCTGCTGTTCCTC
ATGGGGACGGCATGCGCCACACCGCTGCTGAGCGCTGCTGGGCCCGTGGCTGCCCCGAGGGAAG
GCTTCCGGGGACGGGCGCTCCTGTCTGTGGAGCCGGGCAGCAAGCCCTTCACCCGGCAGGAAAT
CATCGGCTTCGTCATCGGCTCCGTCTCCAGTGTGTTGTACCTGCTCTCCCGGCTGCCTCAGATC
CGCACCAACTTCCTCCGGAAGTCCACCCAGGGGATCTCCTACTCGCTGTTCGCGCTGGTGATGC
TGGGGAACACGCTGTATGGGCTGAGCGTGCTGCTCAAAAACCCCGAGGAGGGTCAGAGCGAGGG
CAGCTACTTGCTGCACCACCTCCCCTGGCTTGTGGGCAGCCTGGGCGTGCTGCTGCTCGACACC
ATCATCTCCATCCAGTTCTTGGTGTACAGGCGCAGCGCTGCCGCCTCGGAGCTTGAGCCCCTCC
TCCTCCCCAGCTGACCGAGGCCGGCTGAGCGCAGGAGGACGGGGACCACCGGATGCCACACCAG
GCAGGGGGAGGTGTGGGCAGTGATGGTGCTGCAGCTCTGCATCAGTGTGTGGGCGGCCTCTGGA
TCCCCCATGGACCGAACCGTCCCCTCTGGGAACACACCTTCAGGTAGACCCTGAAGCCTCGAGG
CCAGGGCTGAAGCAGAGACCCCAGGGCCTCTCAGGAGACAGGCTGCCCCTCCTACCACCTACCT
CATTCTGCCTACTCACCCCAGGGGCCACAGCTGCAGCCTGCGGGACTCAGGACTGTCCTGTCAA
CTCCAGACAACCGAGTAAACGGGCTGGGTGTGGTGTCTCACACCTGTCATCCCAGAACTTTGGG
AGGCGGAAGCGGGTGGATCACTTGACGTCTGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAA
CCCCGTCTCTACCAAAAATACAAAAATTAGCCAGGCATGGTGGCACACACCTGTAGTCCCAGCT
ACTTGGGAGGCTGAGGCAGGAGAATTGTTTGAACCCAGGAGACAGAGGTTGCAGTGAGCTGAGA
TCGTGCCACTGAACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAATAAAAAAGACA
ACCGAGGAAACGGTACCTCCCCGCGA

hide sequence

RefSeq Acc Id:

XM_007980266 ⟹ XP_007978457

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	113,217,379 - 113,234,155 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	2,925,128 - 2,941,705 (+)	NCBI

Sequence:

show sequence

ACAAGCGGCGTGGGGGCGGGGCCTGCGGTTCCCGGGGCCGGGCGGCGGCGCGCGGTCAGCTGAC
CCGGCGGGCCCTGACCCAGAAGCTGGGCCCTGGCGGCGGATCTGGACTTGGCGGCCCGCGCCGG
TCTGAGTCACCAGGAGGGAGCTGTGGCTGAGGACGCCGAGGCCTGGAGTGGGTGGTAGCCCCGA
GCCGGGACGCTCCTCCCCCCACATTCTCCCCAGGTCTGCAGGGACGAGTACCCACACTGCCTCC
TCCCACGCCGTGCTTAGGCCAGTTCATCAAAGCCTACAAGACGGGCAACATGGACCAGGCGCTG
TCCCTGTGGTTCCTCCTGGGCTGGATCGGCGGAGACTCCTGCAACCTCATCGGCTCCTTCCTTG
CTGACCAGCTGCCCCTGCAGTCCTACACAGCTGTGTATTACGTCATGGCAGACCTGGTGATGCT
GACGCTGTACTTTTACTACAAGTTCAGGAAACTCCCCTCTCCATTGTCTGCCCCCATCAACTCC
ATGCTGCTGTTCCTCATGGGGACGGCATGCGCCACACCGCTGCTGAGCGCTGCTGGGCCCGTGG
CTGCCCCGAGGGAAGGCTTCCGGGGACGGGCGCTCCTGTCTGTGGAGCCGGGCAGCAAGCCCTT
CACCCGGCAGGAAATCATCGGCTTCGTCATCGGCTCCGTCTCCAGTGTGTTGTACCTGCTCTCC
CGGCTGCCTCAGATCCGCACCAACTTCCTCCGGAAGTCCACCCAGGGGATCTCCTACTCGCTGT
TCGCGCTGGTGATGCTGGGGAACACGCTGTATGGGCTGAGCGTGCTGCTCAAAAACCCCGAGGA
GGGTCAGAGCGAGGGCAGCTACTTGCTGCACCACCTCCCCTGGCTTGTGGGCAGCCTGGGCGTG
CTGCTGCTCGACACCATCATCTCCATCCAGTTCTTGGTGTACAGGCGCAGCGCTGCCGCCTCGG
AGCTTGAGCCCCTCCTCCTCCCCAGCTGACCGAGGCCGGCTGAGCGCAGGAGGACGGGGACCAC
CGGATGCCACACCAGGCAGGGGGAGGTGTGGGCAGTGATGGTGCTGCAGCTCTGCATCAGTGTG
TGGGCGGCCTCTGGATCCCCCATGGACCGAACCGTCCCCTCTGGGAACACACCTTCAGGTAGAC
CCTGAAGCCTCGAGGCCAGGGCTGAAGCAGAGACCCCAGGGCCTCTCAGGAGACAGGCTGCCCC
TCCTACCACCTACCTCATTCTGCCTACTCACCCCAGGGGCCACAGCTGCAGCCTGCGGGACTCA
GGACTGTCCTGTCAACTCCAGACAACCGAGTAAACGGGCTGGGTGTGGTGTCTCACACCTGTCA
TCCCAGAACTTTGGGAGGCGGAAGCGGGTGGATCACTTGACGTCTGGAGTTCGAGACCAGCCTG
GCCAACATGGTGAAACCCCGTCTCTACCAAAAATACAAAAATTAGCCAGGCATGGTGGCACACA
CCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGTTTGAACCCAGGAGACAGAGGT
TGCAGTGAGCTGAGATCGTGCCACTGAACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAA
AAAATAAAAAAGACAACCGAGGAAACGGTACCTCCCCGCGA

hide sequence

RefSeq Acc Id:

XM_038003476 ⟹ XP_037859404

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	2,925,679 - 2,941,705 (+)	NCBI

RefSeq Acc Id:

XM_038003482 ⟹ XP_037859410

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	2,925,679 - 2,941,705 (+)	NCBI

RefSeq Acc Id:

XM_038003485 ⟹ XP_037859413

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	2,925,679 - 2,941,705 (+)	NCBI

RefSeq Acc Id:

XM_038003490 ⟹ XP_037859418

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	2,925,164 - 2,941,705 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007978452	(Get FASTA)	NCBI Sequence Viewer
	XP_007978455	(Get FASTA)	NCBI Sequence Viewer
	XP_007978456	(Get FASTA)	NCBI Sequence Viewer
	XP_007978457	(Get FASTA)	NCBI Sequence Viewer
	XP_037859404	(Get FASTA)	NCBI Sequence Viewer
	XP_037859410	(Get FASTA)	NCBI Sequence Viewer
	XP_037859413	(Get FASTA)	NCBI Sequence Viewer
	XP_037859418	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000017128.1

RefSeq Acc Id:	XP_007978457 ⟸ XM_007980266
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_007978456 ⟸ XM_007980265
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_007978452 ⟸ XM_007980261
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007978455 ⟸ XM_007980264
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSCSAP00000017128 ⟸ ENSCSAT00000017654

RefSeq Acc Id:	XP_037859418 ⟸ XM_038003490
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S8D9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037859404 ⟸ XM_038003476
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037859410 ⟸ XM_038003482
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037859413 ⟸ XM_038003485
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S8D9 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000000879	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017654.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.290	UniProtKB/TrEMBL
InterPro	LAAT-1	UniProtKB/TrEMBL
	PQ-loop_rpt	UniProtKB/TrEMBL
NCBI Gene	SLC66A1	ENTREZGENE
PANTHER	LYSOSOMAL AMINO ACID TRANSPORTER 1 HOMOLOG	UniProtKB/TrEMBL
	SEVEN TRANSMEMBRANE PROTEIN 1-RELATED	UniProtKB/TrEMBL
Pfam	PQ-loop	UniProtKB/TrEMBL
SMART	CTNS	UniProtKB/TrEMBL
UniProt	A0A0D9S8D9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar