Elovl1 (ELOVL fatty acid elongase 1) - Rat Genome Database

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Gene: Elovl1 (ELOVL fatty acid elongase 1) Rattus norvegicus
Analyze
Symbol: Elovl1
Name: ELOVL fatty acid elongase 1
RGD ID: 1587151
Description: Predicted to enable fatty acid elongase activity. Predicted to be involved in ceramide biosynthetic process; establishment of skin barrier; and fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1; elongation of very long chain fatty acids protein 1; hypothetical protein LOC679532; LOC679532; similar to Elongation of very long chain fatty acids protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,961,478 - 131,965,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,961,322 - 131,965,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,670,003 - 134,673,190 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05136,424,640 - 136,427,827 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05136,447,038 - 136,450,225 (+)NCBIRnor_WKY
Rnor_6.05137,255,868 - 137,260,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,255,908 - 137,260,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,046,751 - 141,049,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,909,438 - 138,912,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,508,244 - 130,511,440 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlormequat chloride  (EXP)
chloroprene  (ISO)
copper(II) chloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cyproconazole  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
fonofos  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
GW 7647  (ISO)
hydrogen cyanide  (ISO)
indole-3-methanol  (EXP)
isoprenaline  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
obeticholic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium cyanide  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
tamoxifen  (ISO)
terbufos  (ISO)
tetraphene  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10970790   PMID:12477932   PMID:19946888   PMID:20166112   PMID:20253178   PMID:20937905   PMID:23689133  


Genomics

Comparative Map Data
Elovl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,961,478 - 131,965,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,961,322 - 131,965,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,670,003 - 134,673,190 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05136,424,640 - 136,427,827 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05136,447,038 - 136,450,225 (+)NCBIRnor_WKY
Rnor_6.05137,255,868 - 137,260,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,255,908 - 137,260,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,046,751 - 141,049,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,909,438 - 138,912,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,508,244 - 130,511,440 (+)NCBICelera
Cytogenetic Map5q36NCBI
ELOVL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,363,401 - 43,368,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl143,363,398 - 43,368,074 (-)EnsemblGRCh38hg38GRCh38
GRCh37143,829,072 - 43,833,682 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,601,659 - 43,606,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 34143,498,165 - 43,502,792NCBI
Celera142,111,226 - 42,115,853 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,948,810 - 41,953,487 (-)NCBIHuRef
CHM1_1143,945,527 - 43,950,204 (-)NCBICHM1_1
T2T-CHM13v2.0143,233,949 - 43,238,559 (-)NCBIT2T-CHM13v2.0
Elovl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,284,044 - 118,290,150 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,285,290 - 118,290,150 (+)EnsemblGRCm39 Ensembl
GRCm384118,426,874 - 118,432,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,428,093 - 118,432,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,100,698 - 118,105,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,926,025 - 117,930,848 (+)NCBIMGSCv36mm8
Celera4117,153,631 - 117,158,454 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
Elovl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,945,509 - 2,950,146 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,945,509 - 2,950,146 (-)NCBIChiLan1.0ChiLan1.0
ELOVL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,044,693 - 44,064,111 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,044,693 - 44,048,769 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0142,664,818 - 42,686,475 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ELOVL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,798,305 - 16,803,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,798,370 - 16,802,899 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,925,313 - 16,930,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,965,026 - 16,969,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,965,100 - 16,969,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,757,503 - 16,762,275 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,826,506 - 16,831,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,900,074 - 16,904,850 (+)NCBIUU_Cfam_GSD_1.0
Elovl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,940,387 - 58,945,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,764,718 - 24,769,947 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647424,765,173 - 24,769,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,881,352 - 167,886,124 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,881,357 - 167,886,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26155,333,073 - 155,340,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,444,146 - 89,448,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603327,472,819 - 27,477,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elovl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,675,421 - 2,684,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,679,872 - 2,684,499 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elovl1
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:65
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000037160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat

Markers in Region
D5Wox40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,965,869 - 131,966,040 (+)MAPPERmRatBN7.2
Rnor_6.05137,260,395 - 137,260,565NCBIRnor6.0
Rnor_5.05141,049,859 - 141,050,029UniSTSRnor5.0
Celera5130,511,352 - 130,511,522UniSTS
Cytogenetic Map5q36UniSTS
BB151133  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,965,773 - 131,965,865 (+)MAPPERmRatBN7.2
Rnor_6.05137,260,299 - 137,260,390NCBIRnor6.0
Rnor_5.05141,049,763 - 141,049,854UniSTSRnor5.0
Celera5130,511,256 - 130,511,347UniSTS
Cytogenetic Map5q36UniSTS
AA963388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,965,784 - 131,965,938 (+)MAPPERmRatBN7.2
Rnor_6.05137,260,310 - 137,260,463NCBIRnor6.0
Rnor_5.05141,049,774 - 141,049,927UniSTSRnor5.0
Celera5130,511,267 - 130,511,420UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 39 57 41 19 41 2 3 74 35 35 11 2
Low 4 6 8 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000037160   ⟹   ENSRNOP00000033374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,961,446 - 131,965,956 (+)Ensembl
Rnor_6.0 Ensembl5137,257,287 - 137,260,483 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088022   ⟹   ENSRNOP00000074677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,961,322 - 131,965,937 (+)Ensembl
Rnor_6.0 Ensembl5137,255,924 - 137,259,796 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092755   ⟹   ENSRNOP00000075935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,963,915 - 131,965,958 (+)Ensembl
Rnor_6.0 Ensembl5137,255,925 - 137,259,949 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,255,908 - 137,258,982 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,258,844 - 137,259,804 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,258,424 - 137,259,626 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093001   ⟹   ENSRNOP00000075969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,963,037 - 131,965,956 (+)Ensembl
Rnor_6.0 Ensembl5137,257,637 - 137,259,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,255,922 - 137,259,177 (+)Ensembl
RefSeq Acc Id: NM_001044275   ⟹   NP_001037740
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25131,962,762 - 131,965,958 (+)NCBI
Rnor_6.05137,257,287 - 137,260,483 (+)NCBI
Rnor_5.05141,046,751 - 141,049,947 (+)NCBI
RGSC_v3.45138,909,438 - 138,912,186 (+)RGD
Celera5130,508,244 - 130,511,440 (+)RGD
Sequence:
RefSeq Acc Id: XM_017593616   ⟹   XP_017449105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25131,961,478 - 131,965,961 (+)NCBI
Rnor_6.05137,255,868 - 137,260,486 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593617   ⟹   XP_017449106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25131,961,573 - 131,965,959 (+)NCBI
Rnor_6.05137,256,253 - 137,260,486 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593618   ⟹   XP_017449107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25131,961,573 - 131,965,959 (+)NCBI
Rnor_6.05137,256,253 - 137,260,486 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001037740   ⟸   NM_001044275
- UniProtKB: Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449105   ⟸   XM_017593616
- Peptide Label: isoform X1
- UniProtKB: Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449107   ⟸   XM_017593618
- Peptide Label: isoform X1
- UniProtKB: Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449106   ⟸   XM_017593617
- Peptide Label: isoform X1
- UniProtKB: Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075935   ⟸   ENSRNOT00000092755
RefSeq Acc Id: ENSRNOP00000075969   ⟸   ENSRNOT00000093001
RefSeq Acc Id: ENSRNOP00000074677   ⟸   ENSRNOT00000088022
RefSeq Acc Id: ENSRNOP00000033374   ⟸   ENSRNOT00000037160

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Z8-F1-model_v2 AlphaFold Q5U2Z8 1-279 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693965
Promoter ID:EPDNEW_R4488
Type:initiation region
Name:Elovl1_1
Description:ELOVL fatty acid elongase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4489  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05137,255,911 - 137,255,971EPDNEW
RGD ID:13693969
Promoter ID:EPDNEW_R4489
Type:initiation region
Name:Elovl1_2
Description:ELOVL fatty acid elongase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4488  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05137,257,590 - 137,257,650EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587151 AgrOrtholog
BioCyc Gene G2FUF-40156 BioCyc
Ensembl Genes ENSRNOG00000028448 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000033374 ENTREZGENE
  ENSRNOP00000033374.2 UniProtKB/TrEMBL
  ENSRNOP00000074677.3 UniProtKB/TrEMBL
  ENSRNOP00000075935.2 UniProtKB/TrEMBL
  ENSRNOP00000075969.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037160 ENTREZGENE
  ENSRNOT00000037160.4 UniProtKB/TrEMBL
  ENSRNOT00000088022.3 UniProtKB/TrEMBL
  ENSRNOT00000092755.2 UniProtKB/TrEMBL
  ENSRNOT00000093001.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109632 IMAGE-MGC_LOAD
InterPro ELO_CS UniProtKB/TrEMBL
  ELOVL1 UniProtKB/TrEMBL
  GNS1_SUR4 UniProtKB/TrEMBL
KEGG Report rno:679532 UniProtKB/TrEMBL
MGC_CLONE MGC:93791 IMAGE-MGC_LOAD
NCBI Gene 679532 ENTREZGENE
PANTHER GNS1_SUR4 UniProtKB/TrEMBL
Pfam ELO UniProtKB/TrEMBL
PhenoGen Elovl1 PhenoGen
PROSITE ELO UniProtKB/TrEMBL
UniProt A0A0G2K8N7_RAT UniProtKB/TrEMBL
  A0A1B0GWL0_RAT UniProtKB/TrEMBL
  A0A1B0GWP1_RAT UniProtKB/TrEMBL
  F7F9G6_RAT UniProtKB/TrEMBL
  Q5U2Z8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Elovl1  ELOVL fatty acid elongase 1  Elovl1  elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Elovl1  elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1  LOC679532  similar to Elongation of very long chain fatty acids protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC679532  similar to Elongation of very long chain fatty acids protein 1  LOC684910  similar to Elongation of very long chain fatty acids protein 1  Data Merged 1643240 APPROVED
2006-11-19 LOC679532  similar to Elongation of very long chain fatty acids protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684910  similar to Elongation of very long chain fatty acids protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL