Elovl1 (ELOVL fatty acid elongase 1)

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Gene: Elovl1 (ELOVL fatty acid elongase 1) Rattus norvegicus

Analyze

Symbol:

Elovl1

Name:

ELOVL fatty acid elongase 1

RGD ID:

1587151

Description:

Predicted to enable fatty acid elongase activity. Predicted to be involved in ceramide biosynthetic process; establishment of skin barrier; and fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1; elongation of very long chain fatty acids protein 1; hypothetical protein LOC679532; LOC679532; similar to Elongation of very long chain fatty acids protein 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELOVL1 (ELOVL fatty acid elongase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elovl1 (elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elovl1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELOVL1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELOVL1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elovl1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELOVL1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELOVL1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elovl1 (ELOVL fatty acid elongase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELOVL1 (ELOVL fatty acid elongase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elovl1 (elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elovl1b (ELOVL fatty acid elongase 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elovl1a (ELOVL fatty acid elongase 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16904	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ELO2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Drosophila melanogaster (fruit fly):	CG17821	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG18609	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG2781	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG30008	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG31141	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG31522	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31523	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33110	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG5326	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG6660	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG8534	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9458	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9459	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	bond	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	eloF	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	sit	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	131,961,478 - 131,965,961 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	131,961,322 - 131,965,958 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	134,670,003 - 134,673,190 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	136,424,640 - 136,427,827 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	136,447,038 - 136,450,225 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	137,255,868 - 137,260,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	137,255,908 - 137,260,483 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	141,046,751 - 141,049,947 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	138,909,438 - 138,912,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	130,508,244 - 130,511,440 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

ICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

alpha-phellandrene (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

benzalkonium chloride (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

chloroprene (ISO)

copper(II) chloride (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cyproconazole (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

diuron (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenamidone (ISO)

fluoranthene (ISO)

folic acid (ISO)

fonofos (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

GW 4064 (ISO)

GW 7647 (ISO)

hydrogen cyanide (ISO)

indole-3-methanol (EXP)

isoprenaline (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lead diacetate (EXP)

obeticholic acid (ISO)

ozone (ISO)

paracetamol (ISO)

parathion (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

potassium cyanide (ISO)

progesterone (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

senecionine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

tamoxifen (ISO)

terbufos (ISO)

tetraphene (ISO)

trichostatin A (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ceramide biosynthetic process (ISO)

establishment of skin barrier (ISO)

fatty acid elongation, monounsaturated fatty acid (IBA,ISO)

fatty acid elongation, polyunsaturated fatty acid (IBA)

fatty acid elongation, saturated fatty acid (IBA,ISO)

long-chain fatty-acyl-CoA biosynthetic process (IEA)

sphingolipid biosynthetic process (IBA,ISO)

unsaturated fatty acid biosynthetic process (IEA)

very long-chain fatty acid biosynthetic process (IBA,ISO)

Cellular Component

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IBA)

Molecular Function

fatty acid elongase activity (IBA,ISO)

protein binding (ISO)

very-long-chain 3-ketoacyl-CoA synthase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10970790	PMID:12477932	PMID:19946888	PMID:20166112	PMID:20253178	PMID:20937905	PMID:23689133

Genomics

Comparative Map Data

Elovl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	131,961,478 - 131,965,961 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	131,961,322 - 131,965,958 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	134,670,003 - 134,673,190 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	136,424,640 - 136,427,827 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	136,447,038 - 136,450,225 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	137,255,868 - 137,260,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	137,255,908 - 137,260,483 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	141,046,751 - 141,049,947 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	138,909,438 - 138,912,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	130,508,244 - 130,511,440 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ELOVL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	43,363,401 - 43,368,011 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	43,363,398 - 43,368,074 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	43,829,072 - 43,833,682 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	43,601,659 - 43,606,286 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	43,498,165 - 43,502,792	NCBI
Celera	1	42,111,226 - 42,115,853 (-)	NCBI		Celera
Cytogenetic Map	1	p34.2	NCBI
HuRef	1	41,948,810 - 41,953,487 (-)	NCBI		HuRef
CHM1_1	1	43,945,527 - 43,950,204 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	43,233,949 - 43,238,559 (-)	NCBI		T2T-CHM13v2.0

Elovl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	118,284,044 - 118,290,150 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	118,285,290 - 118,290,150 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	118,426,874 - 118,432,953 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	118,428,093 - 118,432,953 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	118,100,698 - 118,105,521 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	117,926,025 - 117,930,848 (+)	NCBI		MGSCv36	mm8
Celera	4	117,153,631 - 117,158,454 (+)	NCBI		Celera
Cytogenetic Map	4	D2.1	NCBI

Elovl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955537	2,945,509 - 2,950,146 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955537	2,945,509 - 2,950,146 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELOVL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	44,044,693 - 44,064,111 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	44,044,693 - 44,048,769 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	42,664,818 - 42,686,475 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ELOVL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	16,798,305 - 16,803,071 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	16,798,370 - 16,802,899 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	16,925,313 - 16,930,087 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	16,965,026 - 16,969,802 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	16,965,100 - 16,969,969 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	16,757,503 - 16,762,275 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	16,826,506 - 16,831,275 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	16,900,074 - 16,904,850 (+)	NCBI		UU_Cfam_GSD_1.0

Elovl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	58,940,387 - 58,945,152 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	24,764,718 - 24,769,947 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936474	24,765,173 - 24,769,903 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELOVL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	167,881,352 - 167,886,124 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	167,881,357 - 167,886,125 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	155,333,073 - 155,340,903 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELOVL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	89,444,146 - 89,448,802 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	27,472,819 - 27,477,500 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elovl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624892	2,675,421 - 2,684,622 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624892	2,679,872 - 2,684,499 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Elovl1
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	65
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000037160
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	128033842	133011550	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat

Markers in Region

D5Wox40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	131,965,869 - 131,966,040 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	137,260,395 - 137,260,565	NCBI	Rnor6.0
Rnor_5.0	5	141,049,859 - 141,050,029	UniSTS	Rnor5.0
Celera	5	130,511,352 - 130,511,522	UniSTS
Cytogenetic Map	5	q36	UniSTS

BB151133

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	131,965,773 - 131,965,865 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	137,260,299 - 137,260,390	NCBI	Rnor6.0
Rnor_5.0	5	141,049,763 - 141,049,854	UniSTS	Rnor5.0
Celera	5	130,511,256 - 130,511,347	UniSTS
Cytogenetic Map	5	q36	UniSTS

AA963388

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	131,965,784 - 131,965,938 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	137,260,310 - 137,260,463	NCBI	Rnor6.0
Rnor_5.0	5	141,049,774 - 141,049,927	UniSTS	Rnor5.0
Celera	5	130,511,267 - 130,511,420	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	39	57	41	19	41	2	3	74	35	35	11	2
Low		4					6	8			6		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000037160 ⟹ ENSRNOP00000033374

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	131,961,446 - 131,965,956 (+)	Ensembl
Rnor_6.0 Ensembl	5	137,257,287 - 137,260,483 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088022 ⟹ ENSRNOP00000074677

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	131,961,322 - 131,965,937 (+)	Ensembl
Rnor_6.0 Ensembl	5	137,255,924 - 137,259,796 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092755 ⟹ ENSRNOP00000075935

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	131,963,915 - 131,965,958 (+)	Ensembl
Rnor_6.0 Ensembl	5	137,255,925 - 137,259,949 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092766

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	137,255,908 - 137,258,982 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092836

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	137,258,844 - 137,259,804 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092972

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	137,258,424 - 137,259,626 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093001 ⟹ ENSRNOP00000075969

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	131,963,037 - 131,965,956 (+)	Ensembl
Rnor_6.0 Ensembl	5	137,257,637 - 137,259,546 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093017

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	137,255,922 - 137,259,177 (+)	Ensembl

RefSeq Acc Id:

NM_001044275 ⟹ NP_001037740

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	131,962,762 - 131,965,958 (+)	NCBI
Rnor_6.0	5	137,257,287 - 137,260,483 (+)	NCBI
Rnor_5.0	5	141,046,751 - 141,049,947 (+)	NCBI
RGSC_v3.4	5	138,909,438 - 138,912,186 (+)	RGD
Celera	5	130,508,244 - 130,511,440 (+)	RGD

Sequence:

show sequence

CAAACTGAGAATTCATGGCTGGTTTGGGAGAGAATGCTGGGTGTGGATTTTTGGCAATTCTTCT
GGCTTTGGCCAGAGGTTCTGGCCAGAAGTTTCTGGAGAACCTACAAACGTAGCTTATCTGGCTG
GTCAAAGGTGAGTCCTTAGCCAGGATGGAGGCTGTTGTGAACTTGTACCAGGAATTGATGAAGT
GTGCAGATCCCCGGATCCAAAACTATCCTCTGATGGGATCCCCCTTGCTAATAACATCCATCCT
TCTGACCTATGTGTACTTCGTCCTATCACTTGGGCCTCGAATCATGGCTAATCGGAAGCCTTTC
CAACTTCGAGGCTTCATGATTGTCTACAATTTCTCACTGGTGACACTCTCCCTCTACATTGTCT
ATGAGTTCCTCATGTCTGGCTGGCTGAGTACGTATACCTGGCGCTGTGACCCTGTAGACTTTTC
CAATAACCCTGAAGCACTTCGGATGGTTCGAGTGGCCTGGCTCTTCATGCTTTCCAAGGTCATT
GAACTCATGGACACAGTGATATTTATTCTCCGGAAGAAGGATGGGCAAGTGACCTTCCTCCATG
TCTTCCACCACTCGGTGCTTCCCTGGAGCTGGTGGTGGGGGATAAAGATTGCTCCAGGAGGAAT
GGGCTCTTTCCATGCCATGATAAACTCCTCTGTACACGTCGTCATGTACCTCTACTACGGATTG
TCTGCCCTGGGCCCTGTGGCTCAGCCCTACCTTTGGTGGAAGAAACACATGACAGCCATTCAGC
TGATCCAGTTCGTCCTGGTCTCACTGCACATCAGCCAATACTACTTCATGCCCAGCTGCAACTA
CCAATATCCTATCATCATCCACCTCATCTGGATGTACGGCACCATCTTCTTCATACTGTTCTCC
AACTTCTGGTATCACTCTTACACCAAGGGGAAGCGGCTGCCCCGTGCAGTTCAGCAAAATGGAG
CTGCAGCGTCCATGAAGGTCAAGGCCAACTAGCACCAGGGCCTAGATGGTGCCCACCTAAGTGC
CTTGGGACTGCAGCTGGGCAGCACCCACAAGTGTCCTCTCCACCTACACCCATGACCAGGACTC
TTGTGGTCAGGACTGAATAGGCGGATTGGCTCTCTTCCCCACAGCTGGTCTACAGGGACCACTG
TCCCCATTCCTTCTCCCAGCCAGTTCCAGGGATGTGGCCTCATGCTGTCTGCCACCAGAACTGG
AGGCTGGAAAGGGCTGGACACTTACTTCCCACTCCCTGCCTTAAAAACTCGGGAGAACACTCAG
GGCTGGCCCGCGCCCGGGCCTTGTGGCCTTTCTCCTCACACTGAAGAGGTCAGCAATAATCTGT
CACTGTGGACTCAGGCGCCCTTTTCACTCCTCATGGAAGCATGAGCTTCTGGGCCAAAGGTCAG
GATGGGCAGGCCACAGGCCTGGCAATGCAGGCTGTGCACTCAACTGTGTCTTAATTAAAGTGAC
AGGAAACCACAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017593616 ⟹ XP_017449105

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	131,961,478 - 131,965,961 (+)	NCBI
Rnor_6.0	5	137,255,868 - 137,260,486 (+)	NCBI

Sequence:

show sequence

CGGCCCGCCCTCTCCCCCTCTGGTGACAGAAAGTCGGCCCAGCAGATGAGGAAGTGGCCGACAG
GAGGCCCTGGGGACTTCTCTCCGGCCCTGATCCCTTTGAACCCTTCACTGCTGCCCGCCTGGCT
CCCACTGAGTCCTTAGCCAGGATGGAGGCTGTTGTGAACTTGTACCAGGAATTGATGAAGTGTG
CAGATCCCCGGATCCAAAACTATCCTCTGATGGGATCCCCCTTGCTAATAACATCCATCCTTCT
GACCTATGTGTACTTCGTCCTATCACTTGGGCCTCGAATCATGGCTAATCGGAAGCCTTTCCAA
CTTCGAGGCTTCATGATTGTCTACAATTTCTCACTGGTGACACTCTCCCTCTACATTGTCTATG
AGTTCCTCATGTCTGGCTGGCTGAGTACGTATACCTGGCGCTGTGACCCTGTAGACTTTTCCAA
TAACCCTGAAGCACTTCGGATGGTTCGAGTGGCCTGGCTCTTCATGCTTTCCAAGGTCATTGAA
CTCATGGACACAGTGATATTTATTCTCCGGAAGAAGGATGGGCAAGTGACCTTCCTCCATGTCT
TCCACCACTCGGTGCTTCCCTGGAGCTGGTGGTGGGGGATAAAGATTGCTCCAGGAGGAATGGG
CTCTTTCCATGCCATGATAAACTCCTCTGTACACGTCGTCATGTACCTCTACTACGGATTGTCT
GCCCTGGGCCCTGTGGCTCAGCCCTACCTTTGGTGGAAGAAACACATGACAGCCATTCAGCTGA
TCCAGTTCGTCCTGGTCTCACTGCACATCAGCCAATACTACTTCATGCCCAGCTGCAACTACCA
ATATCCTATCATCATCCACCTCATCTGGATGTACGGCACCATCTTCTTCATACTGTTCTCCAAC
TTCTGGTATCACTCTTACACCAAGGGGAAGCGGCTGCCCCGTGCAGTTCAGCAAAATGGAGCTG
CAGCGTCCATGAAGGTCAAGGCCAACTAGCACCAGGGCCTAGATGGTGCCCACCTAAGTGCCTC
GGGACTGCAGCTGGGCAGCACCCACAAGTGTCCTCTCCACCTACACCCATGACCAGGACTCTTG
TGGTCAGGACTGAATAGGCGGATTGGCTCTCTTCCCCACAGCTGGTCTACAGGGACCACTGTCC
CCATTCCTTCTCCCAGCCAGTTCCAGGGATGTGGCCTCATGCTGTCTGCCACCAGAACTGGAGG
CTGGAAAGGGCTGGACACTTACTTCCCACTCCCTGCCTTAAAAACTCGGGAGAACACTCAGGGC
TGGCCCGCGCCCGGGCCTTGTGGCCTTTCTCCTCACACTGAAGAGGTCAGCAATAATCTGTCAC
TGTGGACTCAGGCGCCCTTTTCACTCCTCATGGAAGCATGAGCTTCTGGGCCAAAGGTCAGGAT
GGGCAGGCCACAGGCCTGGCAATGCAGGCTGTGCACTCAACTGTGTCTTAATTAAAGTGACAGG
AAACCACTGA

hide sequence

RefSeq Acc Id:

XM_017593617 ⟹ XP_017449106

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	131,961,573 - 131,965,959 (+)	NCBI
Rnor_6.0	5	137,256,253 - 137,260,486 (+)	NCBI

Sequence:

show sequence

CACCTTGGCCCTCTGACCCCCATTTGCTCACACCTAGTTCTTTTCCAGTATCTCCTGGCCTTCC
TCCCTTTGCTCCCTCCTCTCGTTCCCTTTCCTGCTCCTTGCCGGTGCCCTTTTTCCTTCCCATC
CATCTTAAGGGAACTGGCCCTGTTCCACCGCGGGACAGGGTGGGGGCACACCCGGGTTTCCCTC
AAGTTTAGGGAGAGATCCCTCTCAGAAGTCTGGATTCCCTCCAGTCCTCGGGGTCACTGTGTAT
CTACCGGTGTTAAGTGGTAGTGAAGGGCGAGAGTATTGGAGGAGGTGGTTGAAGCAGATAAGGA
GCTGGCAAGCTCACATGTGTCAGAGAGGAACTGTGTGTGATAGCACATGCCTAAGTGCTAGGCC
CCACTCCGACATAGGCCACCAACAAAAGTGTGGCTGAAGGAAGAAATGAGTGCTGCTCACCCAG
AGCTCTGTGTGAAGAAAGGGAGGTGTGGGTGAGATGTACCCGTGCCTGGTCAAGTAGCCACAGT
TAATGCAGTCCCTGACAGGCATGAAGTTGAGGAGCCTAGCATGTCAGAGTCCAGTAGGGGAGGC
AATTTTGGTGGTGTGGTCAGCATGATATGTATGGGCTGTGTGTGGATGTGTGCTAGCTCCTGGT
ACCGTACGCATATCTCTAAGGTGGTTGAGAGTCGTATGATGAAGGTATGTATTTATTAATGTGT
GAGGTAGATGGTAGAACTTGAGCCCCAAGGCAGGAGAGTGATGGAGAGCGAGCACCCAGAGCAC
TCAGGTTGTTAGGCAATTGCCTGATCCCTCTGGGACAAAGTCCTAGGCTTTCCTGGGTCTAGAC
TAAGTTACTGTATCCCTGTAAGCTTTCTCTTGACATTCTTTCCAACTTTAAGGAGGAGGGGGCC
TAGCCCATGAGGCTCCCTCCCAGAGGAGGGAAAGATTCCTGAGACCTCCCCCACAACCCCCACC
AGGTCCTCACATACCACTGGTGTCCTTACCCTCCCTCCCTGGTAGGGAAGGGTGATGCCCATTC
TGAAGTAGGACAAACTGAGAATTCATGGCTGGTTTGGGAGAGAATGCTGGGTGTGGATTTTTGG
CAATTCTTCTGGCTTTGGCCAGAGGTTCTGGCCAGAAGTTTCTGGAGAACCTACAAACGTAGCT
TATCTGGCTGGTCAAAGGTGGTGAGTCTGGGGCCTTACTTGGCTTTCTCAATTCTGGTGGGTCC
TGCTTCTCTAGGCATTGACCTGTGGCCTGGACCCACCCTCCACCCCATGCCCAATGTAGCGGGG
GCGGGAGTTGGGCGGGGCTGCTGCAAGATCTAGTCAGACAGGTGGAGCCGCCAGGGCAGGAGTC
TCAAAGAGCCAGGCTCCTGGAGTGGAAGAGAGAGAGAGGCAGAACTTGCCGGTGAAAAGAGGGG
AGGAGAGAGGCTGGAGGTGAAACACTGGAAGAAGGCAGAAGGCTGGAGAGTCCTTAGCCAGGAT
GGAGGCTGTTGTGAACTTGTACCAGGAATTGATGAAGTGTGCAGATCCCCGGATCCAAAACTAT
CCTCTGATGGGATCCCCCTTGCTAATAACATCCATCCTTCTGACCTATGTGTACTTCGTCCTAT
CACTTGGGCCTCGAATCATGGCTAATCGGAAGCCTTTCCAACTTCGAGGCTTCATGATTGTCTA
CAATTTCTCACTGGTGACACTCTCCCTCTACATTGTCTATGAGTTCCTCATGTCTGGCTGGCTG
AGTACGTATACCTGGCGCTGTGACCCTGTAGACTTTTCCAATAACCCTGAAGCACTTCGGATGG
TTCGAGTGGCCTGGCTCTTCATGCTTTCCAAGGTCATTGAACTCATGGACACAGTGATATTTAT
TCTCCGGAAGAAGGATGGGCAAGTGACCTTCCTCCATGTCTTCCACCACTCGGTGCTTCCCTGG
AGCTGGTGGTGGGGGATAAAGATTGCTCCAGGAGGAATGGGCTCTTTCCATGCCATGATAAACT
CCTCTGTACACGTCGTCATGTACCTCTACTACGGATTGTCTGCCCTGGGCCCTGTGGCTCAGCC
CTACCTTTGGTGGAAGAAACACATGACAGCCATTCAGCTGATCCAGTTCGTCCTGGTCTCACTG
CACATCAGCCAATACTACTTCATGCCCAGCTGCAACTACCAATATCCTATCATCATCCACCTCA
TCTGGATGTACGGCACCATCTTCTTCATACTGTTCTCCAACTTCTGGTATCACTCTTACACCAA
GGGGAAGCGGCTGCCCCGTGCAGTTCAGCAAAATGGAGCTGCAGCGTCCATGAAGGTCAAGGCC
AACTAGCACCAGGGCCTAGATGGTGCCCACCTAAGTGCCTCGGGACTGCAGCTGGGCAGCACCC
ACAAGTGTCCTCTCCACCTACACCCATGACCAGGACTCTTGTGGTCAGGACTGAATAGGCGGAT
TGGCTCTCTTCCCCACAGCTGGTCTACAGGGACCACTGTCCCCATTCCTTCTCCCAGCCAGTTC
CAGGGATGTGGCCTCATGCTGTCTGCCACCAGAACTGGAGGCTGGAAAGGGCTGGACACTTACT
TCCCACTCCCTGCCTTAAAAACTCGGGAGAACACTCAGGGCTGGCCCGCGCCCGGGCCTTGTGG
CCTTTCTCCTCACACTGAAGAGGTCAGCAATAATCTGTCACTGTGGACTCAGGCGCCCTTTTCA
CTCCTCATGGAAGCATGAGCTTCTGGGCCAAAGGTCAGGATGGGCAGGCCACAGGCCTGGCAAT
GCAGGCTGTGCACTCAACTGTGTCTTAATTAAAGTGACAGGAAACCACTGA

hide sequence

RefSeq Acc Id:

XM_017593618 ⟹ XP_017449107

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	131,961,573 - 131,965,959 (+)	NCBI
Rnor_6.0	5	137,256,253 - 137,260,486 (+)	NCBI

Sequence:

show sequence

CACCTTGGCCCTCTGACCCCCATTTGCTCACACCTAGTTCTTTTCCAGTATCTCCTGGCCTTCC
TCCCTTTGCTCCCTCCTCTCGTTCCCTTTCCTGCTCCTTGCCGGTGCCCTTTTTCCTTCCCATC
CATCTTAAGGGAACTGGCCCTGTTCCACCGCGGGACAGGGTGGGGGCACACCCGGGTTTCCCTC
AAGTTTAGGGAGAGATCCCTCTCAGAAGTCTGGATTCCCTCCAGTCCTCGGGGTCACTGTGTAT
CTACCGGTGTTAAGTGGTAGTGAAGGGCGAGAGTATTGGAGGAGGTGGTTGAAGCAGATAAGGA
GCTGGCAAGCTCACATGTGTCAGAGAGGAACTGTGTGTGATAGCACATGCCTAAGTGCTAGGCC
CCACTCCGACATAGGCCACCAACAAAAGTGTGGCTGAAGGAAGAAATGAGTGCTGCTCACCCAG
AGCTCTGTGTGAAGAAAGGGAGGTGTGGGTGAGATGTACCCGTGCCTGGTCAAGTAGCCACAGT
TAATGCAGTCCCTGACAGGCATGAAGTTGAGGAGCCTAGCATGTCAGAGTCCAGTAGGGGAGGC
AATTTTGGTGGTGTGGTCAGCATGATATGTATGGGCTGTGTGTGGATGTGTGCTAGCTCCTGGT
ACCGTACGCATATCTCTAAGGTGGTTGAGAGTCGTATGATGAAGGTATGTATTTATTAATGTGT
GAGGTAGATGGTAGAACTTGAGCCCCAAGGCAGGAGAGTGATGGAGAGCGAGCACCCAGAGCAC
TCAGGTTGTTAGGCAATTGCCTGATCCCTCTGGGACAAAGTCCTAGGCTTTCCTGGGTCTAGAC
TAAGTTACTGTATCCCTGTAAGCTTTCTCTTGACATTCTTTCCAACTTTAAGGAGGAGGGGGCC
TAGCCCATGAGGCTCCCTCCCAGAGGAGGGAAAGATTCCTGAGACCTCCCCCACAACCCCCACC
AGGTCCTCACATACCACTGGTGTCCTTACCCTCCCTCCCTGGTAGGGAAGGGTGATGCCCATTC
TGAAGTAGGACAAACTGAGAATTCATGGCTGGTTTGGGAGAGAATGCTGGGTGTGGATTTTTGG
CAATTCTTCTGGCTTTGGCCAGAGGTTCTGGCCAGAAGTTTCTGGAGAACCTACAAACGTAGCT
TATCTGGCTGGTCAAAGGTGGTGAGTCTGGGGCCTTACTTGGCTTTCTCAATTCTGGTGGGTCC
TGCTTCTCTAGGCATTGACCTGTGGCCTGGACCCACCCTCCACCCCATGCCCAATGTAGCGGGG
GCGGGAGTTGGGCGGGGCTGCTGCAAGATCTAGTCAGACAGGTGGAGCCGCCAGGGCAGGAGTC
TCAAAGAGCCAGGCTCCTGGAGTGGAAGAGAGAGAGAGGCAGAACTTGCCGGTGAAAAGAGGGG
AGGAGAGAGGCTGGAGGTGAAACACTGGAAGAAGGCAGAAGGCTGGAGGTACTAGAAAGAACGA
GAGGTGACCATGGAGGTGGGAGTCCCAGCAGGGAACAGAGGGGAGATGGGAGTCTTGGGACAGG
ACCAGAGAGACTTTACCTGAGAGAAGGAGACCGTGAGAGGAGTGGCTGAAGGGGAGAATCTCTG
GAAAGAAGAGTGTCTCTCAAAGCAGAGTTAAGACTGCTTGCCAGTACAGAGTCCTTAGCCAGGA
TGGAGGCTGTTGTGAACTTGTACCAGGAATTGATGAAGTGTGCAGATCCCCGGATCCAAAACTA
TCCTCTGATGGGATCCCCCTTGCTAATAACATCCATCCTTCTGACCTATGTGTACTTCGTCCTA
TCACTTGGGCCTCGAATCATGGCTAATCGGAAGCCTTTCCAACTTCGAGGCTTCATGATTGTCT
ACAATTTCTCACTGGTGACACTCTCCCTCTACATTGTCTATGAGTTCCTCATGTCTGGCTGGCT
GAGTACGTATACCTGGCGCTGTGACCCTGTAGACTTTTCCAATAACCCTGAAGCACTTCGGATG
GTTCGAGTGGCCTGGCTCTTCATGCTTTCCAAGGTCATTGAACTCATGGACACAGTGATATTTA
TTCTCCGGAAGAAGGATGGGCAAGTGACCTTCCTCCATGTCTTCCACCACTCGGTGCTTCCCTG
GAGCTGGTGGTGGGGGATAAAGATTGCTCCAGGAGGAATGGGCTCTTTCCATGCCATGATAAAC
TCCTCTGTACACGTCGTCATGTACCTCTACTACGGATTGTCTGCCCTGGGCCCTGTGGCTCAGC
CCTACCTTTGGTGGAAGAAACACATGACAGCCATTCAGCTGATCCAGTTCGTCCTGGTCTCACT
GCACATCAGCCAATACTACTTCATGCCCAGCTGCAACTACCAATATCCTATCATCATCCACCTC
ATCTGGATGTACGGCACCATCTTCTTCATACTGTTCTCCAACTTCTGGTATCACTCTTACACCA
AGGGGAAGCGGCTGCCCCGTGCAGTTCAGCAAAATGGAGCTGCAGCGTCCATGAAGGTCAAGGC
CAACTAGCACCAGGGCCTAGATGGTGCCCACCTAAGTGCCTCGGGACTGCAGCTGGGCAGCACC
CACAAGTGTCCTCTCCACCTACACCCATGACCAGGACTCTTGTGGTCAGGACTGAATAGGCGGA
TTGGCTCTCTTCCCCACAGCTGGTCTACAGGGACCACTGTCCCCATTCCTTCTCCCAGCCAGTT
CCAGGGATGTGGCCTCATGCTGTCTGCCACCAGAACTGGAGGCTGGAAAGGGCTGGACACTTAC
TTCCCACTCCCTGCCTTAAAAACTCGGGAGAACACTCAGGGCTGGCCCGCGCCCGGGCCTTGTG
GCCTTTCTCCTCACACTGAAGAGGTCAGCAATAATCTGTCACTGTGGACTCAGGCGCCCTTTTC
ACTCCTCATGGAAGCATGAGCTTCTGGGCCAAAGGTCAGGATGGGCAGGCCACAGGCCTGGCAA
TGCAGGCTGTGCACTCAACTGTGTCTTAATTAAAGTGACAGGAAACCACTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001037740	(Get FASTA)	NCBI Sequence Viewer
	XP_017449105	(Get FASTA)	NCBI Sequence Viewer
	XP_017449106	(Get FASTA)	NCBI Sequence Viewer
	XP_017449107	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85795	(Get FASTA)	NCBI Sequence Viewer
	EDL90170	(Get FASTA)	NCBI Sequence Viewer
	EDL90171	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001037740 ⟸ NM_001044275

- UniProtKB:

Q5U2Z8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAVVNLYQELMKCADPRIQNYPLMGSPLLITSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV
YNFSLVTLSLYIVYEFLMSGWLSTYTWRCDPVDFSNNPEALRMVRVAWLFMLSKVIELMDTVIF
ILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQ
PYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYT
KGKRLPRAVQQNGAAASMKVKAN

hide sequence

RefSeq Acc Id:	XP_017449105 ⟸ XM_017593616
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAVVNLYQELMKCADPRIQNYPLMGSPLLITSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV YNFSLVTLSLYIVYEFLMSGWLSTYTWRCDPVDFSNNPEALRMVRVAWLFMLSKVIELMDTVIF ILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQ PYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYT KGKRLPRAVQQNGAAASMKVKAN hide sequence

RefSeq Acc Id:	XP_017449107 ⟸ XM_017593618
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAVVNLYQELMKCADPRIQNYPLMGSPLLITSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV YNFSLVTLSLYIVYEFLMSGWLSTYTWRCDPVDFSNNPEALRMVRVAWLFMLSKVIELMDTVIF ILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQ PYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYT KGKRLPRAVQQNGAAASMKVKAN hide sequence

RefSeq Acc Id:	XP_017449106 ⟸ XM_017593617
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAVVNLYQELMKCADPRIQNYPLMGSPLLITSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV YNFSLVTLSLYIVYEFLMSGWLSTYTWRCDPVDFSNNPEALRMVRVAWLFMLSKVIELMDTVIF ILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQ PYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYT KGKRLPRAVQQNGAAASMKVKAN hide sequence

RefSeq Acc Id:

ENSRNOP00000075935 ⟸ ENSRNOT00000092755

RefSeq Acc Id:

ENSRNOP00000075969 ⟸ ENSRNOT00000093001

RefSeq Acc Id:

ENSRNOP00000074677 ⟸ ENSRNOT00000088022

RefSeq Acc Id:

ENSRNOP00000033374 ⟸ ENSRNOT00000037160

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2Z8-F1-model_v2	AlphaFold	Q5U2Z8	1-279	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693965

Promoter ID:

EPDNEW_R4488

Type:

initiation region

Name:

Elovl1_1

Description:

ELOVL fatty acid elongase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4489

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	137,255,911 - 137,255,971	EPDNEW

RGD ID:

13693969

Promoter ID:

EPDNEW_R4489

Type:

initiation region

Name:

Elovl1_2

Description:

ELOVL fatty acid elongase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4488

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	137,257,590 - 137,257,650	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587151	AgrOrtholog
BioCyc Gene	G2FUF-40156	BioCyc
Ensembl Genes	ENSRNOG00000028448	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000033374	ENTREZGENE
	ENSRNOP00000033374.2	UniProtKB/TrEMBL
	ENSRNOP00000074677.3	UniProtKB/TrEMBL
	ENSRNOP00000075935.2	UniProtKB/TrEMBL
	ENSRNOP00000075969.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037160	ENTREZGENE
	ENSRNOT00000037160.4	UniProtKB/TrEMBL
	ENSRNOT00000088022.3	UniProtKB/TrEMBL
	ENSRNOT00000092755.2	UniProtKB/TrEMBL
	ENSRNOT00000093001.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7109632	IMAGE-MGC_LOAD
InterPro	ELO_CS	UniProtKB/TrEMBL
	ELOVL1	UniProtKB/TrEMBL
	GNS1_SUR4	UniProtKB/TrEMBL
KEGG Report	rno:679532	UniProtKB/TrEMBL
MGC_CLONE	MGC:93791	IMAGE-MGC_LOAD
NCBI Gene	679532	ENTREZGENE
PANTHER	GNS1_SUR4	UniProtKB/TrEMBL
Pfam	ELO	UniProtKB/TrEMBL
PhenoGen	Elovl1	PhenoGen
PROSITE	ELO	UniProtKB/TrEMBL
UniProt	A0A0G2K8N7_RAT	UniProtKB/TrEMBL
	A0A1B0GWL0_RAT	UniProtKB/TrEMBL
	A0A1B0GWP1_RAT	UniProtKB/TrEMBL
	F7F9G6_RAT	UniProtKB/TrEMBL
	Q5U2Z8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Elovl1	ELOVL fatty acid elongase 1	Elovl1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-21	Elovl1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	LOC679532	similar to Elongation of very long chain fatty acids protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC679532	similar to Elongation of very long chain fatty acids protein 1	LOC684910	similar to Elongation of very long chain fatty acids protein 1	Data Merged	1643240	APPROVED
2006-11-19	LOC679532	similar to Elongation of very long chain fatty acids protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC684910	similar to Elongation of very long chain fatty acids protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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