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Analyze GeneStrainQTL List |
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GOLF (Gene-Ortholog Location Finder) |
![]() Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 1,2,4-trimethylbenzene | decreases expression | EXP | | 6480464 | pseudocumene results in decreased expression of IPO13 protein | CTD | PMID:17337753 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:731321 | 6480464 | [Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of IPO13 mRNA | CTD | PMID:16214954 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:731321 | 6480464 | Tetrachlorodibenzodioxin affects the expression of IPO13 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:731321 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of IPO13 mRNA | CTD | PMID:18796159 | 2,4-dinitrotoluene | affects expression | EXP | | 6480464 | 2, 4-dinitrotoluene affects the expression of IPO13 mRNA | CTD | PMID:21346803 | 2,6-dinitrotoluene | affects expression | EXP | | 6480464 | 2, 6-dinitrotoluene affects the expression of IPO13 mRNA | CTD | PMID:21346803 | 2-hydroxypropanoic acid | decreases expression | ISO | RGD:731320 | 6480464 | Lactic Acid results in decreased expression of IPO13 mRNA | CTD | PMID:30851411 | 3-isobutyl-1-methyl-7H-xanthine | multiple interactions | ISO | RGD:731320 | 6480464 | [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of IPO13 mRNA | CTD | PMID:28628672 | 4-amino-2,6-dinitrotoluene | affects expression | EXP | | 6480464 | 4-amino-2, 6-dinitrotoluene affects the expression of IPO13 mRNA | CTD | PMID:21346803 | 6-propyl-2-thiouracil | decreases expression | EXP | | 6480464 | Propylthiouracil results in decreased expression of IPO13 mRNA | CTD | PMID:24780913 | aflatoxin B1 | increases expression | ISO | RGD:731320 | 6480464 | Aflatoxin B1 results in increased expression of IPO13 mRNA | CTD | PMID:22100608 | aflatoxin B1 | increases methylation | ISO | RGD:731320 | 6480464 | Aflatoxin B1 results in increased methylation of IPO13 gene | CTD | PMID:27153756 | all-trans-retinoic acid | increases expression | EXP | | 6480464 | Tretinoin results in increased expression of IPO13 mRNA | CTD | PMID:20488242 | ammonium chloride | affects expression | EXP | | 6480464 | Ammonium Chloride affects the expression of IPO13 mRNA | CTD | PMID:16483693 | bisphenol A | increases expression | ISO | RGD:731321 | 6480464 | bisphenol A results in increased expression of IPO13 mRNA | CTD | PMID:21932408 | bisphenol A | affects expression | EXP | | 6480464 | bisphenol A affects the expression of IPO13 mRNA | CTD | PMID:25181051 | bisphenol A | increases expression | ISO | RGD:731320 | 6480464 | bisphenol A results in increased expression of IPO13 mRNA | CTD | PMID:19371625 | bisphenol F | multiple interactions | ISO | RGD:731320 | 6480464 | [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of IPO13 mRNA | CTD | PMID:28628672 | calcitriol | decreases expression | ISO | RGD:731320 | 6480464 | Calcitriol results in decreased expression of IPO13 mRNA | CTD | PMID:16847355 | carbon nanotube | decreases expression | ISO | RGD:731321 | 6480464 | Nanotubes, Carbon results in decreased expression of IPO13 mRNA | CTD | PMID:25554681 | cisplatin | increases expression | ISO | RGD:731320 | 6480464 | Cisplatin results in increased expression of IPO13 mRNA | CTD | PMID:27392435 | dexamethasone | multiple interactions | ISO | RGD:731320 | 6480464 | [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of IPO13 mRNA | CTD | PMID:28628672 | ethanol | affects splicing | ISO | RGD:731321 | 6480464 | Ethanol affects the splicing of IPO13 mRNA | CTD | PMID:30319688 | flutamide | increases expression | EXP | | 6480464 | Flutamide results in increased expression of IPO13 mRNA | CTD | PMID:24136188 | genistein | increases expression | ISO | RGD:731320 | 6480464 | Genistein results in increased expression of IPO13 mRNA | CTD | PMID:19371625 | indometacin | multiple interactions | ISO | RGD:731320 | 6480464 | [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of IPO13 mRNA | CTD | PMID:28628672 | isoprenaline | decreases expression | ISO | RGD:731321 | 6480464 | Isoproterenol results in decreased expression of IPO13 mRNA | CTD | PMID:20003209 | paracetamol | increases expression | ISO | RGD:731320 | 6480464 | Acetaminophen results in increased expression of IPO13 mRNA | CTD | PMID:22230336 | rac-lactic acid | decreases expression | ISO | RGD:731320 | 6480464 | Lactic Acid results in decreased expression of IPO13 mRNA | CTD | PMID:30851411 | resveratrol | increases expression | ISO | RGD:731320 | 6480464 | resveratrol results in increased expression of IPO13 mRNA | CTD | PMID:19371625 | thioacetamide | increases expression | EXP | | 6480464 | Thioacetamide results in increased expression of IPO13 mRNA | CTD | PMID:23411599 | undecane | decreases expression | EXP | | 6480464 | undecane results in decreased expression of IPO13 protein | CTD | PMID:17337753 | valproic acid | affects expression | ISO | RGD:731321 | 6480464 | Valproic Acid affects the expression of IPO13 mRNA | CTD | PMID:17292431 | zearalenone | increases expression | ISO | RGD:731320 | 6480464 | Zearalenone results in increased expression of IPO13 mRNA | CTD | PMID:19371625 | |
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1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA data from the GO Consortium |
3. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
4. | RGD automated data pipeline |
5. | RGD automated import pipeline for gene-chemical interactions |
6. | Tao T, etal., Am J Respir Cell Mol Biol. 2006 Dec;35(6):668-80. Epub 2006 Jun 29. |
7. | Zhang C, etal., Am J Respir Cell Mol Biol 2000 Apr;22(4):451-9. |
Ipo13 (Rattus norvegicus - Norway rat) |
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IPO13 (Homo sapiens - human) |
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Ipo13 (Mus musculus - house mouse) |
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Ipo13 (Chinchilla lanigera - long-tailed chinchilla) |
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IPO13 (Pan paniscus - bonobo/pygmy chimpanzee) |
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IPO13 (Canis lupus familiaris - dog) |
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Ipo13 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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IPO13 (Sus scrofa - pig) |
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RH141226 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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High | ||||||||||||||||
Medium | 21 | 43 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 18 | 29 | 8 | 6 |
Low | 1 | 23 | 6 | 2 | ||||||||||||
Below cutoff |
RefSeq Transcripts | NM_053778 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017593119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AABR07049764 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AAHX01039390 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF110195 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC100658 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ214171 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_053778 ⟹ NP_446230 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
TCCAAAGCCGGGAGGGGCATATCGCGGGCCAGGAGAACGGAGGGAACTAGCTCAGCCCCTCAAChide sequence |
RefSeq Acc Id: | XM_017593119 ⟹ XP_017448608 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
AAGACCCGGAATGAGTTTCCGCGCAGTTCCGCCATGCCGAACCTGGATGTGCTTGGCCGTGCCGhide sequence |
Protein RefSeqs | NP_446230 | (Get FASTA) | NCBI Sequence Viewer |
XP_017448608 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAF44721 | (Get FASTA) | NCBI Sequence Viewer |
AAI00659 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90192 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90193 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90194 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90195 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90196 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90197 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90198 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90199 | (Get FASTA) | NCBI Sequence Viewer | |
Q9JM04 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_446230 ⟸ NM_053778 |
- UniProtKB: | Q9JM04 (UniProtKB/Swiss-Prot) |
- Sequence: |
MERREEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQhide sequence |
RefSeq Acc Id: | XP_017448608 ⟸ XM_017593119 |
- Peptide Label: | isoform X1 |
- Sequence: |
MERREEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQhide sequence |
RGD ID: | 13693960 | |||||||||
Promoter ID: | EPDNEW_R4484 | |||||||||
Type: | multiple initiation site | |||||||||
Name: | Ipo13_1 | |||||||||
Description: | importin 13 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:620071 | AgrOrtholog |
Ensembl Genes | ENSRNOG00000019758 | ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000026844 | ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000026844 | ENTREZGENE, UniProtKB/TrEMBL |
Gene3D-CATH | 1.25.10.10 | UniProtKB/Swiss-Prot |
IMAGE_CLONE | IMAGE:7935813 | IMAGE-MGC_LOAD |
InterPro | ARM-like | UniProtKB/Swiss-Prot |
ARM-type_fold | UniProtKB/Swiss-Prot | |
Exportin-1/Importin-b-like | UniProtKB/Swiss-Prot | |
Importin-beta_N | UniProtKB/Swiss-Prot | |
Importin_rep_1 | UniProtKB/Swiss-Prot | |
Importin_rep_2 | UniProtKB/Swiss-Prot | |
Importin_rep_3 | UniProtKB/Swiss-Prot | |
KEGG Report | rno:116458 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:124583 | IMAGE-MGC_LOAD |
NCBI Gene | 116458 | ENTREZGENE |
Pfam | IBN_N | UniProtKB/Swiss-Prot |
Importin_rep | UniProtKB/Swiss-Prot | |
Importin_rep_2 | UniProtKB/Swiss-Prot | |
Importin_rep_3 | UniProtKB/Swiss-Prot | |
Xpo1 | UniProtKB/Swiss-Prot | |
PhenoGen | Ipo13 | PhenoGen |
PROSITE | IMPORTIN_B_NT | UniProtKB/Swiss-Prot |
SMART | IBN_N | UniProtKB/Swiss-Prot |
Superfamily-SCOP | SSF48371 | UniProtKB/Swiss-Prot |
UniGene | Rn.14252 | ENTREZGENE |
UniProt | IPO13_RAT | UniProtKB/Swiss-Prot |
Q496Z3_RAT | UniProtKB/TrEMBL | |
Q9JM04 | ENTREZGENE | |
UniProt Secondary | F1M8G7 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2004-09-10 | Ipo13 | importin 13 | Imp13 | Symbol updated | 1299863 | APPROVED | |
2002-08-07 | Imp13 | importin 13 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
Note Type | Note | Reference |
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gene_product | member of the karyopherin-beta family | 633132 |
gene_regulation | expression is induced by glucocorticoid | 633132 |
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More on Ipo13 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
RGD Object Information | |
RGD ID: | 620071 |
Created: | 2002-08-06 |
Species: | Rattus norvegicus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.