Aldh4a1 (aldehyde dehydrogenase 4 family, member A1)

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Gene: Aldh4a1 (aldehyde dehydrogenase 4 family, member A1) Rattus norvegicus

Analyze

Symbol:

Aldh4a1

Name:

aldehyde dehydrogenase 4 family, member A1

RGD ID:

1624206

Description:

Predicted to enable 1-pyrroline-5-carboxylate dehydrogenase activity; aldehyde dehydrogenase (NAD+) activity; and identical protein binding activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to be located in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in hyperprolinemia type 2. Orthologous to human ALDH4A1 (aldehyde dehydrogenase 4 family member A1); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; AGAT deficiency pathway; arginine and proline metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

aldehyde dehydrogenase family 4 member A1; delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; L-glutamate gamma-semialdehyde dehydrogenase; LOC641316; P5C dehydrogenase; similar to aldehyde dehydrogenase 4 family, member A1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	151,880,002 - 151,905,491 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	5	151,830,701 - 151,925,345 (+)	Ensembl
Rnor_6.0	5	158,090,238 - 158,115,725 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	158,042,587 - 158,135,733 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	161,829,323 - 161,854,796 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	158,437,691 - 158,453,827 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	5	150,256,652 - 150,282,086 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hyperprolinemia (ISO)

hyperprolinemia type 2 (ISO)

intellectual disability (ISO)

non-alcoholic fatty liver disease (ISO)

pre-malignant neoplasm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (ISO)

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrabromodibenzodioxine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

8'-apo-beta,psi-caroten-8'-al (ISO)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

beta-carotene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butylated hydroxyanisole (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

clofibric acid (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

furan (EXP)

glafenine (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

manganese(II) chloride (EXP)

methapyrilene (EXP)

nitrofen (EXP)

O-methyleugenol (ISO)

ochratoxin A (EXP)

paracetamol (ISO)

paraquat (EXP)

perfluorononanoic acid (ISO)

phlorizin (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP)

selenium atom (ISO)

sodium arsenite (EXP)

spironolactone (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP,ISO)

tetrachloromethane (EXP,ISO)

triclosan (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

proline catabolic process to glutamate (IEA)

Cellular Component

cytosol (ISO)

integral component of membrane (IEA)

intermediate filament (IEA)

mitochondrial matrix (IEA)

mitochondrion (ISO)

plasma membrane (IEA)

Molecular Function

1-pyrroline-5-carboxylate dehydrogenase activity (IBA,IEA,ISO)

aldehyde dehydrogenase (NAD+) activity (ISO)

G protein-coupled receptor activity (IEA)

identical protein binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

2-hydroxyglutaric aciduria pathway (ISO)

AGAT deficiency pathway (ISO)

alanine, aspartate and glutamate metabolic pathway (IEA)

arginine and proline metabolic pathway (IEA,ISO)

glutamic acid/glutamate metabolic pathway (ISO)

guanidinoacetate methyltransferase deficiency pathway (ISO)

gyrate atrophy pathway (ISO)

homocarnosinosis pathway (ISO)

hyperprolinemia type I pathway (ISO)

hyperprolinemia type II pathway (ISO)

ornithine translocase deficiency pathway (ISO)

prolidase deficiency pathway (ISO)

succinic semialdehyde dehydrogenase deficiency pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:4015840	PMID:8621661	PMID:12477932	PMID:14651853	PMID:15057822	PMID:18614015	PMID:22516612	PMID:23928095

Genomics

Comparative Map Data

Aldh4a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	151,880,002 - 151,905,491 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	5	151,830,701 - 151,925,345 (+)	Ensembl
Rnor_6.0	5	158,090,238 - 158,115,725 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	158,042,587 - 158,135,733 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	161,829,323 - 161,854,796 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	158,437,691 - 158,453,827 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	5	150,256,652 - 150,282,086 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ALDH4A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	18,871,430 - 18,902,555 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	18,871,430 - 18,902,724 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	19,197,924 - 19,229,049 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	19,070,513 - 19,101,659 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	18,943,231 - 18,974,378	NCBI
Celera	1	17,525,220 - 17,556,609 (-)	NCBI
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	17,442,100 - 17,473,468 (-)	NCBI		HuRef
CHM1_1	1	19,307,273 - 19,338,658 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	18,691,214 - 18,722,363 (-)	NCBI

Aldh4a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	139,348,404 - 139,377,002 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	139,350,177 - 139,377,001 (+)	Ensembl
GRCm38	4	139,622,871 - 139,649,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	139,622,866 - 139,649,690 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	139,178,809 - 139,205,606 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	138,895,086 - 138,921,763 (+)	NCBI			mm8
Celera	4	141,417,063 - 141,444,074 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.79	NCBI

Aldh4a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	338,593 - 372,872 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	338,593 - 369,528 (+)	NCBI	ChiLan1.0	ChiLan1.0

ALDH4A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	18,878,421 - 18,909,615 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	18,878,421 - 18,909,615 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	17,829,723 - 17,861,008 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ALDH4A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	79,688,078 - 79,712,340 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	79,688,086 - 79,710,540 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	76,202,258 - 76,226,797 (+)	NCBI
ROS_Cfam_1.0	2	80,311,305 - 80,335,987 (+)	NCBI
ROS_Cfam_1.0 Ensembl	2	80,311,248 - 80,335,984 (+)	Ensembl
UMICH_Zoey_3.1	2	77,070,827 - 77,093,559 (+)	NCBI
UNSW_CanFamBas_1.0	2	78,080,932 - 78,105,430 (+)	NCBI
UU_Cfam_GSD_1.0	2	79,151,584 - 79,176,100 (+)	NCBI

Aldh4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	39,392,819 - 39,421,970 (-)	NCBI
SpeTri2.0	NW_004936474	5,217,601 - 5,246,718 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALDH4A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	77,374,002 - 77,404,036 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	77,373,999 - 77,404,015 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	71,494,105 - 71,512,632 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALDH4A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	113,661,850 - 113,693,665 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666033	2,463,684 - 2,495,495 (-)	NCBI	Vero_WHO_p1.0

Aldh4a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	4,051,178 - 4,082,142 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624764	4,051,999 - 4,081,954 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH133354

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	151,905,182 - 151,905,385 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	158,115,417 - 158,115,619	NCBI	Rnor6.0
Rnor_5.0	5	161,854,488 - 161,854,690	UniSTS	Rnor5.0
RGSC_v3.4	5	158,453,519 - 158,453,721	UniSTS	RGSC3.4
Celera	5	150,281,778 - 150,281,980	UniSTS
RH 3.4 Map	5	1046.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	143799107	158428037	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	144358090	157869054	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	151006154	161165494	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		27	46	41		41		1	23	35	21	1
Low	3	16	11		19		8	10	51		20	10	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000077863 ⟹ ENSRNOP00000072481

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,909,648 - 151,925,345 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,119,894 - 158,135,733 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079516 ⟹ ENSRNOP00000069536

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,857,371 - 151,905,482 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,090,238 - 158,115,725 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080108 ⟹ ENSRNOP00000069221

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,831,503 - 151,918,134 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,069,725 - 158,128,523 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088766 ⟹ ENSRNOP00000075011

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,857,371 - 151,901,630 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,090,173 - 158,115,751 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090593 ⟹ ENSRNOP00000069936

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,830,701 - 151,873,075 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,042,587 - 158,083,311 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092026 ⟹ ENSRNOP00000069040

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,857,371 - 151,904,072 (+)	Ensembl
Rnor_6.0 Ensembl	5	158,090,268 - 158,114,306 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095029 ⟹ ENSRNOP00000077405

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,858,983 - 151,918,134 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101164 ⟹ ENSRNOP00000083484

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,858,038 - 151,876,946 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117654 ⟹ ENSRNOP00000085310

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	151,909,648 - 151,925,345 (+)	Ensembl

RefSeq Acc Id:

NM_001134698 ⟹ NP_001128170

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	151,880,002 - 151,905,491 (+)	NCBI
Rnor_6.0	5	158,090,238 - 158,115,725 (+)	NCBI
Rnor_5.0	5	161,829,323 - 161,854,796 (+)	NCBI
RGSC_v3.4	5	158,437,691 - 158,453,827 (+)	RGD
Celera	5	150,256,652 - 150,282,086 (+)	RGD

Sequence:

show sequence

CAACCGCTCAAGACTCTTAGAACCTCTGTGATGCTGCCGCCGGCTTTGCTTCGCCGATCCCTGC
TGTCCTACGCCTGGAGGGGCTCTGGGCTGCGGTGGAAACATGCCTCCTCTCTGAAGGTGGCCAA
TGAGCCCATCTTAGCGTTTACTCAGGGCAGCCCCGAACGGGACGCACTGCAGAAGGCTCTGAAC
GACCTGAAGGACCAGACAGAAGCCATCCCCTGCGTTGTTGGGGACGAGGAGGTGTGGACCTCTG
ATGTGCGGTACCAGCTGTCGCCTTTTAACCATGGACACAAGGTGGCCAAGTTCTGTTATGCCGA
CAAGGCCTTGCTCAACAAAGCCATCGAAGCTGCCGTGCTTGCCAGGAAAGAGTGGGACCTGAAG
CCCGTGGCAGACCGGGCCCAGATCTTCCTGAAGGCGGCAGATATGCTGAGCGGGCCCCGAAGGG
CTGAAATCCTTGCCAAGACCATGGTGGGACAGGGCAAGACCGTAATCCAAGCAGAGATTGACGC
CGCAGCCGAACTCATCGACTTCTTCAGGTTCAATGCCAAGTTCGCCGTGGAACTGGAGGGGGAA
CAACCCATCAGCGTGCCACCCAGTACCAACCACGTGGTGTACCGGGGACTGGAGGGCTTCGTGG
CGGCCATCTCTCCCTTCAACTTCACCGCGATCGGAGGCAACCTGGCAGGCGCACCGGCCTTAAT
GGGCAACGTGGTTCTCTGGAAGCCCAGTGACACTGCCATGTTGGCTAGCTATGCTGTCTACCGC
ATCCTCCGGGAGGCCGGCTTGCCCCCCAACGTAATCCAGTTTGTGCCAGCTGATGGGCCGACAT
TCGGGGACACAGTCACCAGCTCAGAGCACCTCTGTGGTATCAACTTCACAGGCAGTGTGCCCAC
CTTTAAACACCTGTGGAAGCAGGTGGCCCAGAATCTGGACCGGTTCCGTACCTTCCCACGCCTG
GCTGGAGAGTGTGGCGGGAAGAATTTCCATTTCGTGCACAGCTCGGCCGACGTGGACAGCGTGG
TGAGCGGGACGCTGCGCTCGGCCTTCGAGTATGGCGGTCAGAAGTGCTCAGCCTGCTCGCGCCT
CTACGTGCCACAGTCTCTGTGGCCACAGATCAAAGGGCGACTGCTGGAGGAGCACAGCAGGATC
AAAGTGGGCAACCCTGCAGAGGACTTTGGGACCTTCTTCTCTGCAGTGATTGATGCCAAGGCCT
TCGCCCGCATAAAGAAGTGGCTGGAGCATGCGCGTTCCTCGCCCAGCCTCAGCATCCTGGCAGG
CGGCCAGTGTAACGAGTCGGTGGGTTACTTCGTGGAGCCGTGTATCATTGAGAGCAAGGACCCA
CAGGAGCCCATCATGAAGGAGGAGATCTTCGGCCCTGTGCTGACAGTGTATGTGTACCCGGATG
AGAAATACAGAGAGACGCTGCAACTGGTCGACAGCACCACCAGCTATGGCCTCACGGGGGCAGT
GTTTGCCCAGGATAAAACAATTGTCCAAGAAGCCACGAGGATGCTGAGGAACGCTGCTGGCAAC
TTCTACATCAACGACAAGTCTACTGGATCTGTGGTGGGCCAGCAGCCCTTTGGGGGCGCCCGGG
CCTCAGGAACCAATGACAAACCAGGAGGCCCCCACTACATCTTACGCTGGACCTCACCCCAGGT
CATCAAGGAGACTCATAAGCCCCTGGGGGACTGGCGATACTCCTACATGCAGTAACCCGGCCCA
GCACCTCTGTTGTCAAACCATCTGTCCATCCAAATGACAGACATCTCTGCACTGACCCCCCTGC
TCCCCAACCAGCTCCTCCTGGACTCTCTACAGCTGAGCTGGACCCTGCCCTGGCCACTGGGTAC
CTTTCCTTGGAATCAGGTGCCCAGTCATTGGCTTTGGTCATATTGGAGAGGATGAGCCAATCTA
CCCAGAAATCTCATCTGCTGGGGAACACCCTGGTACCTGGCAGGTTCTTCCCCTGACTGCTTTT
CTTGCCTCATCCTGGACCGGGTGACTCAGAGGCCCCGAGAACAGAGAGGGATATTTTCAGGATC
TTGTCAGGGAAGGAGACAACGCTGGTGTCCTGTAGCCTCACCACTCAAAGACTCCTGACCTTAG
CCTTGTCCCCTACACATGTCCACTGAGATAAGACCTTAGCCAGATGTCTGTCCGGGCACCAGCT
GGCTTTGCCCTTGGTCTGTGCTAGCTCCTCCTGCAGGTACTTGTGTCCAGCCATATGCCTTAGA
CCCATGTGCCTTCCTCCAGGGTGCCTGTGCATCCCTGAGACTTCATCCCTCCTGGCCACCTTCT
GGGAGTGACCAGTCATGGTCACCCCATACAGTCTGAATCTGGGAAGCCTCGAGATGGGCCTCCA
TTCCATACTCTTGTGCGATGCAGCCAGCCCAGAGGTAGCCAGGGTGAGCTCCTGCTTGGGTCCC
TGATAATCAAATGTTTCCAGTGGCTTGAGAGCATGTGGGGTTTCCTTTCAAGGACATTTGCCAG
GGGTCCGCATGGAGCTGGTATAGCTGTCACCAAGGGCTACCCTCATCACTCTCAGGGGCAGGCA
CCAGTACCAGGCCGGCTCTGTCCTGCTTCCTTTCAGGGTCCATGTTGCTTCCCAGGGAGCAGGG
CTAGACTGCAAATGTCCCGATTCTGCTGGTTCTATACTGTGAGGCGCATTTACTGCCACCTGAG
AAAATGCCAGATACCTACTCAAAGTGGCCACGGAGGGAGGTGAGGGGCGCACTGGATTCTCATT
CCTAATCTAACGAACTGCCAGCGACTTGTCGCATGGTTCTGTGTGATGCCACTGGAGGGAGTAG
TGACTCCGGTGCCCAGTGGTTGGGTTTAAATGGCTTTTTGTCTCCCCCACCCCCCAAGGTGGTC
ACCCAAAAAAACCATGTAAATTCTCTAACCTTTCATGTCTAAAATGGTGACGATTCCCTCATGT
ACCCGGAGGATCATTGAGCTAATCCCTGTGGATTTCAGATAAACGATTGGAAATGTCACCTGTT
TGTTTCTCAACCCTGTGTGCTGATCTTATGTGTCAGCTTTGCTGGGCCACAGTACCCAGAGACC
TGGTCAACCATTGTGGAAGGTGCCTTGAATGAGAGTAAAGTTTAAATAAATGAGCTCTTAAATT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001128170	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68153	(Get FASTA)	NCBI Sequence Viewer
	EDL80928	(Get FASTA)	NCBI Sequence Viewer
	P0C2X9	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001128170 ⟸ NM_001134698

- UniProtKB:

B4F768 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLPPALLRRSLLSYAWRGSGLRWKHASSLKVANEPILAFTQGSPERDALQKALNDLKDQTEAIP
CVVGDEEVWTSDVRYQLSPFNHGHKVAKFCYADKALLNKAIEAAVLARKEWDLKPVADRAQIFL
KAADMLSGPRRAEILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTN
HVVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPN
VIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWKQVAQNLDRFRTFPRLAGECGGKNFH
FVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPQSLWPQIKGRLLEEHSRIKVGNPAEDFG
TFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYFVEPCIIESKDPQEPIMKEEIF
GPVLTVYVYPDEKYRETLQLVDSTTSYGLTGAVFAQDKTIVQEATRMLRNAAGNFYINDKSTGS
VVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSYMQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000069040 ⟸ ENSRNOT00000092026

RefSeq Acc Id:

ENSRNOP00000069221 ⟸ ENSRNOT00000080108

RefSeq Acc Id:

ENSRNOP00000069536 ⟸ ENSRNOT00000079516

RefSeq Acc Id:

ENSRNOP00000069936 ⟸ ENSRNOT00000090593

RefSeq Acc Id:

ENSRNOP00000072481 ⟸ ENSRNOT00000077863

RefSeq Acc Id:

ENSRNOP00000075011 ⟸ ENSRNOT00000088766

RefSeq Acc Id:

ENSRNOP00000077405 ⟸ ENSRNOT00000095029

RefSeq Acc Id:

ENSRNOP00000083484 ⟸ ENSRNOT00000101164

RefSeq Acc Id:

ENSRNOP00000085310 ⟸ ENSRNOT00000117654

Protein Domains

Aldedh

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C2X9-F1-model_v2	AlphaFold	P0C2X9	1-563	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1624206	AgrOrtholog
BioCyc Gene	G2FUF-39408	BioCyc
BioCyc Pathway	ARGASEDEG-PWY [L-arginine degradation I (arginase pathway)]	BioCyc
	PROUT-PWY [L-proline degradation I]	BioCyc
Ensembl Genes	ENSRNOG00000061876	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000069040.2	UniProtKB/TrEMBL
	ENSRNOP00000069221.2	UniProtKB/TrEMBL
	ENSRNOP00000069536	ENTREZGENE
	ENSRNOP00000069536.2	UniProtKB/TrEMBL
	ENSRNOP00000069936.2	UniProtKB/TrEMBL
	ENSRNOP00000075011.2	UniProtKB/TrEMBL
	ENSRNOP00000077405.1	UniProtKB/TrEMBL
	ENSRNOP00000085310.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079516	ENTREZGENE
	ENSRNOT00000079516.2	UniProtKB/TrEMBL
	ENSRNOT00000080108.2	UniProtKB/TrEMBL
	ENSRNOT00000088766.2	UniProtKB/TrEMBL
	ENSRNOT00000090593.2	UniProtKB/TrEMBL
	ENSRNOT00000092026.2	UniProtKB/TrEMBL
	ENSRNOT00000095029.1	UniProtKB/TrEMBL
	ENSRNOT00000117654.1	UniProtKB/TrEMBL
Gene3D-CATH	2.10.50.30	UniProtKB/TrEMBL
	3.40.309.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.605.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ald_DH/histidinol_DH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_CS_CYS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_CS_GLU	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aldehyde_DH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ANF_lig-bd_rcpt	UniProtKB/TrEMBL
	GPCR_3	UniProtKB/TrEMBL
	GPCR_3_9-Cys_dom	UniProtKB/TrEMBL
	GPCR_3_9-Cys_sf	UniProtKB/TrEMBL
	GPCR_3_C	UniProtKB/TrEMBL
	GPCR_3_Ca_sens_rcpt-rel	UniProtKB/TrEMBL
	GPCR_3_CS	UniProtKB/TrEMBL
	IF_rod_dom	UniProtKB/TrEMBL
	P5CDH/ALDH4A1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peripla_BP_I	UniProtKB/TrEMBL
KEGG Report	rno:641316	UniProtKB/TrEMBL
NCBI Gene	641316	ENTREZGENE
PANTHER	PTHR24061	UniProtKB/TrEMBL
Pfam	7tm_3	UniProtKB/TrEMBL
	Aldedh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ANF_receptor	UniProtKB/TrEMBL
	NCD3G	UniProtKB/TrEMBL
PhenoGen	Aldh4a1	PhenoGen
PRINTS	GPCRMGR	UniProtKB/TrEMBL
PROSITE	ALDEHYDE_DEHYDR_CYS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ALDEHYDE_DEHYDR_GLU	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F3_2	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F3_4	UniProtKB/TrEMBL
	IF_ROD_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53720	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF53822	UniProtKB/TrEMBL
TIGRFAMs	D1pyr5carbox1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JUB9_RAT	UniProtKB/TrEMBL
	A0A0G2JUT5_RAT	UniProtKB/TrEMBL
	A0A0G2JVM0_RAT	UniProtKB/TrEMBL
	A0A0G2K9I7_RAT	UniProtKB/TrEMBL
	A0A8I5YBT1_RAT	UniProtKB/TrEMBL
	A0A8I6A130_RAT	UniProtKB/TrEMBL
	A0A8L2R1U3_RAT	UniProtKB/TrEMBL
	AL4A1_RAT	UniProtKB/Swiss-Prot
	B4F768	ENTREZGENE, UniProtKB/TrEMBL
	P0C2X9	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-12-02	Aldh4a1	aldehyde dehydrogenase 4 family, member A1	LOC641316	similar to aldehyde dehydrogenase 4 family, member A1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-05-03	LOC641316	similar to aldehyde dehydrogenase 4 family, member A1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)