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Gene: Zcchc17 (zinc finger CCHC-type containing 17) Rattus norvegicus

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Symbol:

Zcchc17

Name:

zinc finger CCHC-type containing 17

RGD ID:

1565267

Description:

Predicted to enable RNA binding activity and identical protein binding activity. Predicted to be involved in RNA stabilization. Predicted to be located in nucleolus. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human ZCCHC17 (zinc finger CCHC-type containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500555; nucleolar protein of 40 kDa; RGD1565267; similar to PS1D protein; zinc finger CCHC domain-containing protein 17; zinc finger, CCHC domain containing 17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,942,789 - 147,984,596 (-)	NCBI		GRCr8
mRatBN7.2	5	142,658,626 - 142,700,440 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,658,589 - 142,700,426 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	145,357,901 - 145,399,693 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	147,127,707 - 147,169,498 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	147,125,098 - 147,166,475 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,535,519 - 148,577,315 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,535,519 - 148,577,292 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	152,252,914 - 152,294,538 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	149,347,190 - 149,388,386 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	141,125,063 - 141,166,773 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

ethanol (ISO)

fenthion (ISO)

fluoranthene (ISO)

FR900359 (ISO)

gentamycin (EXP)

glafenine (EXP)

indometacin (ISO)

lead(0) (ISO)

leflunomide (ISO)

methidathion (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA stabilization (IBA)

Cellular Component

cytosolic large ribosomal subunit (IEA,ISO)

nucleolus (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12202495	PMID:22658674	PMID:22681889	PMID:29028963

Genomics

Comparative Map Data

Zcchc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,942,789 - 147,984,596 (-)	NCBI		GRCr8
mRatBN7.2	5	142,658,626 - 142,700,440 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,658,589 - 142,700,426 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	145,357,901 - 145,399,693 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	147,127,707 - 147,169,498 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	147,125,098 - 147,166,475 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,535,519 - 148,577,315 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,535,519 - 148,577,292 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	152,252,914 - 152,294,538 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	149,347,190 - 149,388,386 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	141,125,063 - 141,166,773 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ZCCHC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	31,297,032 - 31,364,936 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	31,296,982 - 31,364,953 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	31,769,879 - 31,837,783 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	31,542,429 - 31,610,367 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	30,026,341 - 30,094,350 (+)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	29,876,542 - 29,944,556 (+)	NCBI		HuRef
CHM1_1	1	31,885,748 - 31,953,687 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	31,149,209 - 31,217,206 (+)	NCBI		T2T-CHM13v2.0

Zcchc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	130,209,176 - 130,253,785 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	130,209,176 - 130,253,736 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	130,315,383 - 130,359,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	130,315,383 - 130,359,943 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,993,329 - 130,037,190 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	129,818,205 - 129,840,890 (-)	NCBI		MGSCv36	mm8
Celera	4	128,649,036 - 128,692,835 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.43	NCBI

Zcchc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	9,793,264 - 9,850,396 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	9,793,264 - 9,850,396 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZCCHC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	195,468,411 - 195,536,665 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	194,587,456 - 194,655,395 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	30,576,876 - 30,645,156 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	31,597,190 - 31,665,371 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	31,597,212 - 31,665,373 (+)	Ensembl	panpan1.1		panPan2

ZCCHC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	69,659,152 - 69,720,942 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	66,237,619 - 66,300,042 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	70,223,407 - 70,285,922 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	70,223,408 - 70,285,234 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	67,059,336 - 67,121,725 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	68,056,026 - 68,118,431 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	69,055,592 - 69,118,094 (-)	NCBI		UU_Cfam_GSD_1.0

Zcchc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,700,222 - 48,751,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,525,019 - 14,576,648 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,525,043 - 14,576,627 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZCCHC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	87,879,830 - 87,942,014 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	87,879,727 - 87,942,857 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	81,586,425 - 81,631,241 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZCCHC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	101,472,935 - 101,540,741 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	101,473,694 - 101,540,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	15,133,560 - 15,201,983 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zcchc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	14,649,851 - 14,697,311 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zcchc17
427 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	451
Count of miRNA genes:	223
Interacting mature miRNAs:	259
Transcripts:	ENSRNOT00000017156
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

Markers in Region

RH134427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	142,658,732 - 142,658,918 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	148,535,625 - 148,535,810	NCBI	Rnor6.0
Rnor_5.0	5	152,253,021 - 152,253,206	UniSTS	Rnor5.0
RGSC_v3.4	5	149,347,296 - 149,347,481	UniSTS	RGSC3.4
Celera	5	141,125,169 - 141,125,354	UniSTS
RH 3.4 Map	5	990.09	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH94406

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	142,658,522 - 142,658,702 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	15,110,318 - 15,110,494 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	14,994,377 - 14,994,552	NCBI	Rnor6.0
Rnor_6.0	5	148,535,415 - 148,535,594	NCBI	Rnor6.0
Rnor_5.0	5	19,778,456 - 19,778,631	UniSTS	Rnor5.0
Rnor_5.0	5	152,252,811 - 152,252,990	UniSTS	Rnor5.0
RGSC_v3.4	5	149,347,086 - 149,347,265	UniSTS	RGSC3.4
RGSC_v3.4	5	15,336,448 - 15,336,623	UniSTS	RGSC3.4
Celera	5	14,492,133 - 14,492,308	UniSTS
Celera	5	141,124,959 - 141,125,138	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH138794

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	142,659,415 - 142,659,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	148,536,308 - 148,536,449	NCBI	Rnor6.0
Rnor_5.0	5	152,253,704 - 152,253,845	UniSTS	Rnor5.0
RGSC_v3.4	5	149,347,979 - 149,348,120	UniSTS	RGSC3.4
Celera	5	141,125,852 - 141,125,993	UniSTS
RH 3.4 Map	5	989.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001395613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001395614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017156 ⟹ ENSRNOP00000017156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	142,658,627 - 142,700,426 (-)	Ensembl
Rnor_6.0 Ensembl	5	148,535,519 - 148,577,292 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100987 ⟹ ENSRNOP00000085072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	142,658,628 - 142,700,409 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108745 ⟹ ENSRNOP00000078016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	142,658,589 - 142,700,387 (-)	Ensembl

RefSeq Acc Id:

NM_001109267 ⟹ NP_001102737

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,584 (-)	NCBI
mRatBN7.2	5	142,658,626 - 142,700,426 (-)	NCBI
Rnor_6.0	5	148,535,519 - 148,577,292 (-)	NCBI
Rnor_5.0	5	152,252,914 - 152,294,538 (-)	NCBI
RGSC_v3.4	5	149,347,190 - 149,388,386 (-)	RGD
Celera	5	141,125,063 - 141,166,773 (-)	RGD

Sequence:

show sequence

CGCCGTGCATTGTGGGTGAGAACGAGCGGAGCAGATTCAGTGTTCCTAGGGATGAAGCGGCTGT
CCTGTTAGGAGCGGACGCGGAGACGTTTGAATTAGCTTTAGCGGAAGAGAAATGGAGGAGCCGT
AGACTATTAAGGATGAATTCAGGAAGGCCTGAGACCATGGAAAACTTGCCTGCACTGTATACTA
TTTTTCAAGGAGAGGTTGCTATGGTGACAGACTATGGAGCTTTTATCAAAATCCCAGGCTGTCG
GAAGCAAGGTCTGGTCCATCGAACTCACATGTCGTCTTGTCGAGTGGATAAGCCTTCTGAGATA
GTAGATGTTGGAGACAAAGTGTGGGTGAAGCTTATTGGCCGAGAGATGAAAAATGATAGAATAA
AAGTGTCTCTGTCCATGAAAGTTGTCAACCAAGGAACTGGGAAAGACCTCGACCCCAACAACGT
TATCATTGAGCAAGAAGAGAGGCGCAGGCGATCCTTCCAGGACTACACTGGGCAGAAGATCACC
CTTGAGGCCGTCCTGAACACGACCTGCAAGAAGTGTGGCTGCAAAGGCCACTTTGCAAAGGACT
GCTTCATGCAGCCAGGCGGAACCAAGTATTCTCTGGTCCCTGAAGAGGAAGAGGAAAAAGAGGA
AGCAAAGGCAGAAGGCCTTGAGAAACCTGATCCCACAAAGAATTCTTCCAGGAAGAGAAAGAAG
GAAAAGAAGAAGAAGAAACATAGAGACAGGAAGTCGTCTGACTGTGATAGCCCTGACTCTGAGA
GTGACACGGGCAAGAAGGCGAGGCACACAGCAAAAGACAGCAAGGCTCCAAAGAAGAAAAAGAA
GAAGAAGAAACACAAGAAGAAGCACAAGGAATGATGGTGGAGCAGGCCGCAGCAGCCTTGGCTC
CTGCAAAGACTTACTAGTGAGAATGTGGCCTCCTACCCCACTGACTCTGTCCCCATGGTCTCGG
ATGGCTTTTCCTCATGCAGCAAGCAGATTGGGGAGCCAGAGGGCAGCTCCCAAAATGGTTTTTC
CTTGTTGCTCCTGATCCCTTTGCAAGTGACCCCTGCACCCATCGCATTCACGAGCTCAGTTTCT
TCATTCAGCAGAAGGGTCTAGTACCACCCCGGCTGCCACTGCCAGAGCTGGATTCCGTTGCAGG
AGTCTGTGCTGGAGCCACAGGTGCTACTGTGGAGGTGAGCCTGGCTGTGGCGGAAGAGCCACCC
TGACCTGCCTGCTGTCTGGGGTGGTTGTGGGTGGACTCTGCGGCCTCTATTCGCTCAGCCAGGG
CCTGTGAGGAGGACAGTGTTTGCAGTGACCGCTGAACCAGAGATCTGTAGCCAAGGTCATTGCT
CTGCTTCTATCACTGTGTGACTGACTGGTTCCATTTCAGGCCTCTGCTTAAATTCCTGGCATAA
CTGGAAACGTGTTTGGTTTTAAACTTTGCAGAAGGCTTCATTCCTATAATCCTTCCTGGGTGAC
TTAGAGACTTAACACATCAGTTCACAGAAAACACTTAATATGTTATCCAAGACCCTGGAAAGAG
GCCAAGCAGAGGCACAAAGCCAAGGCCACTAGCAGGTCACAGCTTTCTTGAGATTACTTATAAA
TCCTCTCTTCCACAGTGACCTGCAGGCCTTCACTTCAGCACTGACACACAGGAAAGAAGACCAA
AGGCAGAGGCAACTGGGTGGCCTTGGCTCTGCTTTATTGACCTTGGAGCACCCTTTGGATACAG
TTTTAAAAAATAAACCACATACACAATGGG

hide sequence

RefSeq Acc Id:

NM_001395613 ⟹ NP_001382542

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,584 (-)	NCBI
mRatBN7.2	5	142,658,626 - 142,700,426 (-)	NCBI

RefSeq Acc Id:

NM_001395614 ⟹ NP_001382543

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,584 (-)	NCBI
mRatBN7.2	5	142,658,626 - 142,700,426 (-)	NCBI

RefSeq Acc Id:

NR_172648

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,584 (-)	NCBI
mRatBN7.2	5	142,658,626 - 142,700,426 (-)	NCBI

RefSeq Acc Id:

XM_006238970 ⟹ XP_006239032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,596 (-)	NCBI
mRatBN7.2	5	142,659,656 - 142,700,440 (-)	NCBI
Rnor_6.0	5	148,535,521 - 148,577,306 (-)	NCBI
Rnor_5.0	5	152,252,914 - 152,294,538 (-)	NCBI

Sequence:

show sequence

CGCCCCCTCAGGCGCGCCGTGCATTGTGGGTGAGAACGAGCGGAGCAGATTCAGTGTTCCTAGG
GATGAAGCGGCTGTCCTGTTAGGAGCGGACGCGGAGTCTGGTCCATCGAACTCACATGTCGTCT
TGTCGAGTGGATAAGCCTTCTGAGATAGTAGATGTTGGAGACAAAGTGTGGGTGAAGCTTATTG
GCCGAGAGATGAAAAATGATAGAATAAAAGTGTCTCTGTCCATGAAAGTTGTCAACCAAGGAAC
TGGGAAAGACCTCGACCCCAACAACGTTATCATTGAGCAAGAAGAGAGGCGCAGGCGATCCTTC
CAGGACTACACTGGGCAGAAGATCACCCTTGAGGCCGTCCTGAACACGACCTGCAAGAAGTGTG
GCTGCAAAGGCCACTTTGCAAAGGACTGCTTCATGCAGCCAGGCGGAACCAAGTATTCTCTGGT
CCCTGAAGAGGAAGAGGAAAAAGAGGAAGCAAAGGCAGAAGGCCTTGAGAAACCTGATCCCACA
AAGAATTCTTCCAGGAAGAGAAAGAAGGAAAAGAAGAAGAAGAAACATAGAGACAGGAAGTCGT
CTGACTGTGATAGCCCTGACTCTGAGAGTGACACGGGCAAGAAGGCGAGGCACACAGCAAAAGA
CAGCAAGGCTCCAAAGAAGAAAAAGAAGAAGAAGAAACACAAGAAGAAGCACAAGGAATGATGG
TGGAGCAGGCCGCAGCAGCCTTGGCTCCTGCAAAGACTTACTAGTGAGAATGTGGCCTCCTACC
CCACTGACTCTGTCCCCATGGTCTCGGATGGCTTTTCCTCATGCAGCAAGCAGATTGGGGAGCC
AGAGGGCAGCTCCCAAAATGGTTTTTCCTTGTTGCTCCTGATCCCTTTGCAAGTGACCCCTGCA
CCCATCGCATTCACGAGCTCAGTTTCTTCATTCAGCAGAAGGGTCTAGTACCACCCCGGCTGCC
ACTGCCAGAGCTGGATTCCGTTGCAGGAGTCTGTGCTGGAGCCACAGGTGCTACTGTGGAGGTG
AGCCTGGCTGTGGCGGAAGAGCCACCCTGACCTGCCTGCTGTCTGGGGTGGTTGTGGGTGGACT
CTGCGGCCTCTATTCGCTCAGCCAGGGCCTGTGAGGAGGACAGTGTTTGCAGTGACCGCTGAAC
CAGAGATCTGTAGCCAAGGTCATTGCTCTGCTTCTATCACTGTGTGACTGACTGGTTCCATTTC
AGGCCTCTGCTTAAATTCCTGGCATAACTGGAAACGTGTTTGGTTTTAAACTTTGCAGAAGGCT
TCATTCCTATAATCCTTCCTGGGTGACTTAGAGACTTAACACATCAGTTCACAGAAAACACTTA
ATATGTTATCCAAGACCCTGGAAAGAGGCCAAGCAGAGGCACAAAGCCAAGGCCACTAGCAGGT
CACAGCTTTCTTGAGATTACTTATAAATCCTCTCTTCCACAGTGAAGACCTCTTTCCCCTGGGC
TGACTAGGAAACCAGTGTTTGTAACCTGAGGACTTGCTGGGCATGATGAGTGTGTGGCTCTTAG
CAGTCACCTCCCACCATAGTGGTCCACGCGTGGACCTTGATGTCCTGAACTTGTACTCCAAAGA
GAGGGTGACCACAGCATACCACGTAGCTAATCCAGGACTGTTGTGTGCAGGATGGATGTGAAGT
AGCCACTCAGTGACAGCCAGCTCCTCTGAGCAGGGGCGGGTCAGTGCAAAGGCTCGCATAGGTG
CTGCTGTCTCCGCACTGAGCCCGAGACTGTCCACTCAGCTCCTTATCAGCCCTGCTTCCCAGGT
GACCTGCAGGCCTTCACTTCAGCACTGACACACAGGAAAGAAGACCAAAGGCAGAGGCAACTGG
GTGGCCTTGGCTCTGCTTTATTGACCTTGGAGCACCCTTTGGATACAGTTTTAAAAAATAAACC
ACATACACAATG

hide sequence

RefSeq Acc Id:

XM_039110612 ⟹ XP_038966540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,984,566 (-)	NCBI
mRatBN7.2	5	142,659,373 - 142,700,422 (-)	NCBI

RefSeq Acc Id:

XM_063288265 ⟹ XP_063144335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,942,789 - 147,978,732 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102737	(Get FASTA)	NCBI Sequence Viewer
	NP_001382542	(Get FASTA)	NCBI Sequence Viewer
	NP_001382543	(Get FASTA)	NCBI Sequence Viewer
	XP_006239032	(Get FASTA)	NCBI Sequence Viewer
	XP_038966540	(Get FASTA)	NCBI Sequence Viewer
	XP_063144335	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80591	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017156.4
	ENSRNOP00000078016
	ENSRNOP00000078016.1
	ENSRNOP00000085072.1

RefSeq Acc Id:	NP_001102737 ⟸ NM_001109267
- Peptide Label:	isoform 1
- UniProtKB:	D3ZCQ7 (UniProtKB/TrEMBL), A6ISP0 (UniProtKB/TrEMBL), A0A8I5ZJN0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAV LNTTCKKCGCKGHFAKDCFMQPGGTKYSLVPEEEEEKEEAKAEGLEKPDPTKNSSRKRKKEKKK KKHRDRKSSDCDSPDSESDTGKKARHTAKDSKAPKKKKKKKKHKKKHKE hide sequence

RefSeq Acc Id:	XP_006239032 ⟸ XM_006238970
- Peptide Label:	isoform X2
- Sequence:	show sequence MSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRR RSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLVPEEEEEKEEAKAEGLEKP DPTKNSSRKRKKEKKKKKHRDRKSSDCDSPDSESDTGKKARHTAKDSKAPKKKKKKKKHKKKHK E hide sequence

Ensembl Acc Id:

ENSRNOP00000017156 ⟸ ENSRNOT00000017156

RefSeq Acc Id:	XP_038966540 ⟸ XM_039110612
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZJN0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078016 ⟸ ENSRNOT00000108745

Ensembl Acc Id:

ENSRNOP00000085072 ⟸ ENSRNOT00000100987

RefSeq Acc Id:	NP_001382543 ⟸ NM_001395614
- Peptide Label:	isoform 3

RefSeq Acc Id:	NP_001382542 ⟸ NM_001395613
- Peptide Label:	isoform 2

RefSeq Acc Id:	XP_063144335 ⟸ XM_063288265
- Peptide Label:	isoform X2

Protein Domains

CCHC-type S1 motif

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZCQ7-F1-model_v2	AlphaFold	D3ZCQ7	1-241	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694084

Promoter ID:

EPDNEW_R4608

Type:

initiation region

Name:

Zcchc17_1

Description:

zinc finger CCHC-type containing 17

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	148,577,254 - 148,577,314	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565267	AgrOrtholog
BioCyc Gene	G2FUF-39750	BioCyc
Ensembl Genes	ENSRNOG00000012266	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017156.5	UniProtKB/TrEMBL
	ENSRNOT00000100987.1	UniProtKB/TrEMBL
	ENSRNOT00000108745	ENTREZGENE
	ENSRNOT00000108745.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
	Zinc finger, CCHC-type	UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/TrEMBL
	Rbsml_prot_S1_RNA-bd_dom	UniProtKB/TrEMBL
	ZCCHC17_S1	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
KEGG Report	rno:500555	UniProtKB/TrEMBL
NCBI Gene	500555	ENTREZGENE
PANTHER	NUCLEOLAR PROTEIN OF 40 KDA	UniProtKB/TrEMBL
	PTHR15838:SF1	UniProtKB/TrEMBL
Pfam	PF00575	UniProtKB/TrEMBL
PhenoGen	Zcchc17	PhenoGen
PROSITE	PS50126	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012266	RatGTEx
SMART	SM00316	UniProtKB/TrEMBL
Superfamily-SCOP	Nucleic_acid_OB	UniProtKB/TrEMBL
UniProt	A0A8I5ZJN0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZD0_RAT	UniProtKB/TrEMBL
	A6ISP0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZCQ7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zcchc17	zinc finger CCHC-type containing 17	Zcchc17	zinc finger, CCHC domain containing 17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Zcchc17	zinc finger, CCHC domain containing 17	RGD1565267_predicted	similar to PS1D protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565267_predicted	similar to PS1D protein (predicted)	LOC500555	similar to PS1D protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500555	similar to PS1D protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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