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Gene: Zcchc17 (zinc finger CCHC-type containing 17) Ictidomys tridecemlineatus

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Symbol:

Zcchc17

Name:

zinc finger CCHC-type containing 17

RGD ID:

12572931

Description:

ENCODES a protein that exhibits identical protein binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN RNA stabilization (inferred); FOUND IN cytosolic large ribosomal subunit (inferred); nucleolus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleolar protein of 40 kDa

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,700,222 - 48,751,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,525,019 - 14,576,648 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,525,043 - 14,576,627 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zcchc17	Squirrel	RNA stabilization	involved_in	IEA	PANTHER:PTN001439044	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zcchc17	Squirrel	cytosolic large ribosomal subunit	part_of	IEA	UniProtKB:Q9ESX4 and ensembl:ENSMUSP00000120807	150520179		Ensembl	GO_REF:0000107
Zcchc17	Squirrel	nucleolus	located_in	IEA	UniProtKB:Q9ESX4 and ensembl:ENSMUSP00000120807	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zcchc17	Squirrel	identical protein binding	enables	IEA	UniProtKB:Q9NP64 and ensembl:ENSP00000343557	150520179		Ensembl	GO_REF:0000107
Zcchc17	Squirrel	nucleic acid binding	enables	IEA	InterPro:IPR001878 and InterPro:IPR003029	150520179		InterPro	GO_REF:0000002
Zcchc17	Squirrel	protein binding	enables	ISO	UniProtKB:Q6NYC1	9068941	PMID:23455924 and PMID:33961781	IntAct	PMID:23455924 and PMID:33961781
Zcchc17	Squirrel	protein binding	enables	ISO	UniProtKB:P06396 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Zcchc17	Squirrel	protein binding	enables	ISO	UniProtKB:A0MZ66-4 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Zcchc17	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H190	9068941	PMID:16189514 and PMID:21516116	IntAct	PMID:16189514 and PMID:21516116
Zcchc17	Squirrel	protein binding	enables	ISO	UniProtKB:O00560 and UniProtKB:Q9H190	9068941	PMID:25416956	IntAct	PMID:25416956
Zcchc17	Squirrel	RNA binding	enables	IEA	PANTHER:PTN001439044	150520179		TreeGrafter	GO_REF:0000118
Zcchc17	Squirrel	zinc ion binding	enables	IEA	InterPro:IPR001878	150520179		InterPro	GO_REF:0000002
Zcchc17	Squirrel	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043

PMID:22301074	PMID:30032202

Zcchc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,700,222 - 48,751,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,525,019 - 14,576,648 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,525,043 - 14,576,627 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZCCHC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	31,297,032 - 31,364,936 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	31,296,982 - 31,364,953 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	31,769,879 - 31,837,783 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	31,542,429 - 31,610,367 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	30,026,341 - 30,094,350 (+)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	29,876,542 - 29,944,556 (+)	NCBI		HuRef
CHM1_1	1	31,885,748 - 31,953,687 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	31,149,209 - 31,217,206 (+)	NCBI		T2T-CHM13v2.0

Zcchc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	130,209,176 - 130,253,785 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	130,209,176 - 130,253,736 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	130,315,383 - 130,359,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	130,315,383 - 130,359,943 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,993,329 - 130,037,190 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	129,818,205 - 129,840,890 (-)	NCBI		MGSCv36	mm8
Celera	4	128,649,036 - 128,692,835 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.43	NCBI

Zcchc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,942,789 - 147,984,596 (-)	NCBI		GRCr8
mRatBN7.2	5	142,658,626 - 142,700,440 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,658,589 - 142,700,426 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	145,357,901 - 145,399,693 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	147,127,707 - 147,169,498 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	147,125,098 - 147,166,475 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,535,519 - 148,577,315 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,535,519 - 148,577,292 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	152,252,914 - 152,294,538 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	149,347,190 - 149,388,386 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	141,125,063 - 141,166,773 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Zcchc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	9,793,264 - 9,850,396 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	9,793,264 - 9,850,396 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZCCHC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	195,468,411 - 195,536,665 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	194,587,456 - 194,655,395 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	30,576,876 - 30,645,156 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	31,597,190 - 31,665,371 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	31,597,212 - 31,665,373 (+)	Ensembl	panpan1.1		panPan2

ZCCHC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	69,659,152 - 69,720,942 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	66,237,619 - 66,300,042 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	70,223,407 - 70,285,922 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	70,223,408 - 70,285,234 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	67,059,336 - 67,121,725 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	68,056,026 - 68,118,431 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	69,055,592 - 69,118,094 (-)	NCBI		UU_Cfam_GSD_1.0

ZCCHC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	87,879,830 - 87,942,014 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	87,879,727 - 87,942,857 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	81,586,425 - 81,631,241 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZCCHC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	101,472,935 - 101,540,741 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	101,473,694 - 101,540,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	15,133,560 - 15,201,983 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zcchc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	14,649,851 - 14,697,311 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005317725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000003822 ⟹ ENSSTOP00000003426

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936474	14,525,019 - 14,576,648 (+)	Ensembl

RefSeq Acc Id:

XM_005317725 ⟹ XP_005317782

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	48,700,222 - 48,751,137 (+)	NCBI
SpeTri2.0	NW_004936474	14,525,043 - 14,576,627 (+)	NCBI

Sequence:

show sequence

CCTAGGCGCGCTGGGTCTTGTGGGTGGGAACGCTCTGACTGGGTTTGGCGTTTCGGGCAATAAGGCGGCCTGGGGAGATCTGAAGCTGACGCCAAGGCACTTGAGTTAGCTTTAGCAGAAGAGAAATG
GAGGAGCCATAGAACATTAAGGATGAATTCAGGAAGACCTGAGACCATGGAAAACTTACCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCCATGGTGACAGATTATGGAGCCTTTATCAAAATCC
CAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAACTCACATGTCCTCTTGTCGGGTGGACAAGCCTTCTGAGATAGTAGATGTTGGAGACAAAGTGTGGGTGAAACTGATTGGTCGAGAGATGAAAAAT
GATAGGATAAAAGTATCCCTCTCCATGAAAGTTGTCAACCAAGGGACTGGGAAAGACCTCGATCCCAACAATGTTATCATTGAGCAAGAAGAGAGGCGAAGGCGGTCCTTCCAGGATTACACTGGGCA
GAAGATCACTCTTGAGGCGGTCCTGAACACTACCTGCAAGAAGTGTGGCTGTAAAGGTCACTTTGCAAAAGATTGCTTCATGCAACCAGGTGGGACCAAATATTCTCTGATACCTGATGAAGAAGAGG
AGAAAGAAGAGACAAAGTCAGCAGAATTTGAGAAACCTGATTCCATGAGGAATTCTTCCCGGAAAAGAAAAAAGGAAAAGAAGAAAAAGAAACATAGAGACAAGAAGTCATCTGACTCCGACAGCTCA
GACTCTGAGAGTGATACGGGCAAGAGAGCAAAGCACACATCAAAAGATAGCAAGGCGGCTAAGAAGAAGAAAAAGAAGAAGAAGCATAAGAAGAAGCACAAGGAATGAGAGTAGAAAAGAGATGACGG
GGTGGTTGAGAGAATAAGGAACCAGGAGTTTTGTGCCTTGAAGCTCTGGCTCCTGAAAAGACTCAATAGTGAGAATATGGCCTCCCACCCCGTTGACAACTATGGGAATGCAGCAAGCAGGTTTGGGA
GTTACAGGTCAGAAGCAGCCACCTGAATGAGTTGTTCTTTCCTTACTGCTTCTGATCTCTTTGCAGTTGACCCCTGAGTCCCACCCATTCATTCACCCTATTTTTTTTCATTCAGCAGGAGGTCTGTT
TACCCTCCTCAGCTACCACTGCCAGAGCTGGATACCTTTATAGGAGTCCAGGCTAAAGCCACAAGTACTGCTGTGGAGGTGAGAGCCTGGCTGTTATTTGAACAGTGACTGGTGCCTTCCTGTTGTCT
GTCTTGAACCAGGCGATGGGTTAGTTTATGCTGTGTATGTAGGAGCAGAGGGAAACTGGCAGCAAGAGGGAGAACGTGGTAAGGAGTGGTGCTCACTTTTTCCATTCCCTAGTATGGTTCTACTAGGC
TAGAAGTGACAGCCAGTGACCACAGCCATAAAACAGTCATTTGCAGTTTGACTTATCTTGTATATGACATTCCAACAGACCACTGAACCAGACATATGAAGCCAAGGTCATTGCTCTACTTTCTATTT
ATTACTGTATGATTTGGCTAGTTCCACTTCAGGTCTGTGCTTAAATTCCTGGCACTAAATGGAAATGTGTTTGGTTTGAAACCTGCTCAAAGTTCTTATTCTTATAATCCTTCTTCTTGGTTAACATA
ACAGATTTAAAGTCACTGAATCTACATTAGTTTATAGAAAAACATTTAATATGTTCCCTTAGACCTTGGAGAGAAGCCTAGCCAAGGGCTGATACAAAGCTAAAGGTACTAGCAGGCCACAGCTTTCT
TGGAAGATCACTTATAAACCCTTCTGTAATGATCAGATGATCTATTTTCCCAGAGTTGATTAGAGAACCAGTAAGAATTTATAACCTTTGAGTACTAGCCTGGTGCATAATGAGAGCTTATTAGTATC
TTGGCCATTGGTCATCTTCTCCCACAGTAGCCCAAGCCTGGATCCTGTGATCTTGTACTCTGGGAAGGGAGAAACCACAGCATCCCACAAAGAGCCAGACAAAAGAAAGTACTCAGTGCAGTATGGGC
CAGGGGTGACAGTTCAGTGGTCAACGCGCCAATGACTGGAATAGGTGATTTGACCCAGGGAGGAGCAATGTCAAGGCAAGATGTAGGTGCAGCTATCATCATTGAATGTCCCTGACATTGTCCATTTT
AGCTTCTCATCCAGTGTTTCAAGTGACCTTAAAGCAGTTATTTCTGCCCATTGACACCTGGGGAAAACTTAAGACTCCCAGAACCACATCACCAGAGGCAACTGCATGGCCTCTGCTCTGCTTTATTG
ACTTCAGAGCATATTGGATACAGTT

hide sequence

RefSeq Acc Id:

XM_040288268 ⟹ XP_040144202

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	48,725,950 - 48,751,137 (+)	NCBI


Protein RefSeqs	XP_005317782	(Get FASTA)	NCBI Sequence Viewer
	XP_040144202	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003426.3
GenBank Protein	KAG3282593	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005317782 ⟸ XM_005317725
- Peptide Label:	isoform X1
- UniProtKB:	I3M325 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAV LNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEETKSAEFEKPDSMRNSSRKRKKEKKKKKHRDKKSSDSDSSDSESDTGKRAKHTSKDSKAAKKKKKKKKHKKKHKE hide sequence

RefSeq Acc Id:	XP_040144202 ⟸ XM_040288268
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000003426 ⟸ ENSSTOT00000003822

Protein Domains

CCHC-type S1 motif

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003825	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003822.3	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/TrEMBL
	S1_domain	UniProtKB/TrEMBL
	ZCCHC17_S1	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
NCBI Gene	Zcchc17	ENTREZGENE
PANTHER	NUCLEOLAR PROTEIN OF 40 KDA	UniProtKB/TrEMBL
	PTHR15838:SF1	UniProtKB/TrEMBL
Pfam	PF00575	UniProtKB/TrEMBL
PROSITE	PS50126	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
SMART	SM00316	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
UniProt	I3M325	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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