ZCCHC17 (zinc finger CCHC-type containing 17) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ZCCHC17 (zinc finger CCHC-type containing 17) Homo sapiens
Analyze
Symbol: ZCCHC17
Name: zinc finger CCHC-type containing 17
RGD ID: 1604815
HGNC Page HGNC:30246
Description: Enables identical protein binding activity. Predicted to be involved in RNA stabilization. Predicted to be located in nucleolus. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: HSPC251; nucleolar protein 40; nucleolar protein of 40 kDa; pnn-interacting nucleolar protein; pNO40; PS1D; putative S1 RNA binding domain protein; putative S1 RNA-binding domain protein; RP11-266K22.1; zinc finger CCHC domain-containing protein 17; zinc finger, CCHC domain containing 17
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,297,032 - 31,364,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)EnsemblGRCh38hg38GRCh38
GRCh37131,769,879 - 31,837,783 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,542,429 - 31,610,367 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,026,341 - 30,094,350 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,876,542 - 29,944,556 (+)NCBIHuRef
CHM1_1131,885,748 - 31,953,687 (+)NCBICHM1_1
T2T-CHM13v2.0131,149,209 - 31,217,206 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 53 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZCCHC17Human1,2-dimethylhydrazine increases expressionISOZcchc17 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of ZCCHC17 mRNACTDPMID:22206623
ZCCHC17Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZcchc17 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ZCCHC17 mRNACTDPMID:21570461
ZCCHC17Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOZcchc17 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of ZCCHC17 mRNACTDPMID:33387578
ZCCHC17Human2-methylcholine affects expressionEXP 6480464beta-methylcholine affects the expression of ZCCHC17 mRNACTDPMID:21179406
ZCCHC17Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of ZCCHC17 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:28628672
ZCCHC17Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:28628672
ZCCHC17Human4,4'-sulfonyldiphenol multiple interactionsISOZcchc17 (Rattus norvegicus)6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:36041667
ZCCHC17Humanarsenite(3-) multiple interactionsEXP 6480464arsenite promotes the reaction [G3BP1 protein binds to ZCCHC17 mRNA]CTDPMID:32406909
ZCCHC17Humanarsenous acid decreases expressionISOZcchc17 (Mus musculus)6480464Arsenic Trioxide results in decreased expression of ZCCHC17 mRNACTDPMID:35676786
ZCCHC17Humanbenzo[a]pyrene increases expressionISOZcchc17 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of ZCCHC17 mRNACTDPMID:22228805
ZCCHC17Humanbenzo[a]pyrene decreases methylationISOZcchc17 (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of ZCCHC17 exon and Benzo(a)pyrene results in decreased methylation of ZCCHC17 intronCTDPMID:27901495
ZCCHC17Humanbisphenol A increases expressionISOZcchc17 (Rattus norvegicus)6480464bisphenol A results in increased expression of ZCCHC17 mRNACTDPMID:25181051
ZCCHC17Humanbisphenol A multiple interactionsISOZcchc17 (Rattus norvegicus)6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:36041667
ZCCHC17Humanbisphenol A decreases expressionISOZcchc17 (Mus musculus)6480464bisphenol A results in decreased expression of ZCCHC17 mRNACTDPMID:33221593
ZCCHC17Humanbisphenol F multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of ZCCHC17 mRNACTDPMID:28628672
ZCCHC17Humanbisphenol F multiple interactionsISOZcchc17 (Rattus norvegicus)6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:36041667
ZCCHC17HumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to ZCCHC17 gene]CTDPMID:28238834
ZCCHC17Humancyclosporin A decreases expressionEXP 6480464Cyclosporine results in decreased expression of ZCCHC17 mRNACTDPMID:25562108
ZCCHC17Humandexamethasone multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of ZCCHC17 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of ZCCHC17 mRNACTDPMID:28628672
ZCCHC17Humandiarsenic trioxide decreases expressionISOZcchc17 (Mus musculus)6480464Arsenic Trioxide results in decreased expression of ZCCHC17 mRNACTDPMID:35676786

1 to 20 of 53 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZCCHC17HumanRNA stabilization involved_inIBAPANTHER:PTN001040074 and TAIR:locus:2013051150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZCCHC17Humancytosolic large ribosomal subunit part_ofIEAUniProtKB:Q9ESX4 and ensembl:ENSMUSP00000120807150520179 EnsemblGO_REF:0000107
ZCCHC17Humannucleolus located_inIEAUniProtKB-SubCell:SL-0188150520179 UniProtGO_REF:0000044
ZCCHC17Humannucleolus located_inIEAUniProtKB:Q9ESX4 and ensembl:ENSMUSP00000120807150520179 EnsemblGO_REF:0000107
ZCCHC17Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
ZCCHC17Humanribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043

Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11042152   PMID:12202495   PMID:12477932   PMID:12893261   PMID:14702039   PMID:15146197   PMID:15342556   PMID:15489334   PMID:16189514   PMID:16344560   PMID:16710414   PMID:18854154  
PMID:21078624   PMID:21244100   PMID:21516116   PMID:21832049   PMID:21873635   PMID:22020285   PMID:22658674   PMID:22681889   PMID:23455491   PMID:23455924   PMID:24163370   PMID:24705354  
PMID:24981860   PMID:25416956   PMID:25544563   PMID:26167880   PMID:26186194   PMID:26496610   PMID:26760575   PMID:27107014   PMID:28514442   PMID:28718761   PMID:29028963   PMID:29509190  
PMID:29511261   PMID:29934401   PMID:30196744   PMID:30463901   PMID:30471916   PMID:31217076   PMID:31365120   PMID:31586073   PMID:32296183   PMID:32529326   PMID:32814053   PMID:32877691  
PMID:33961781   PMID:34185411   PMID:35013218   PMID:35271311   PMID:35844135   PMID:35915203   PMID:35944360   PMID:36114006   PMID:36244648   PMID:36273042   PMID:36574265   PMID:36912080  
PMID:37054706   PMID:37616343   PMID:37689310   PMID:38050142   PMID:38113892   PMID:38630575   PMID:38697112   PMID:39098523   PMID:39238192  



ZCCHC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,297,032 - 31,364,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)EnsemblGRCh38hg38GRCh38
GRCh37131,769,879 - 31,837,783 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,542,429 - 31,610,367 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,026,341 - 30,094,350 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,876,542 - 29,944,556 (+)NCBIHuRef
CHM1_1131,885,748 - 31,953,687 (+)NCBICHM1_1
T2T-CHM13v2.0131,149,209 - 31,217,206 (+)NCBIT2T-CHM13v2.0
Zcchc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,209,176 - 130,253,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,209,176 - 130,253,736 (-)EnsemblGRCm39 Ensembl
GRCm384130,315,383 - 130,359,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,315,383 - 130,359,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,993,329 - 130,037,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,818,205 - 129,840,890 (-)NCBIMGSCv36mm8
Celera4128,649,036 - 128,692,835 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Zcchc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,942,789 - 147,984,596 (-)NCBIGRCr8
mRatBN7.25142,658,626 - 142,700,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,658,589 - 142,700,426 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,357,901 - 145,399,693 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,127,707 - 147,169,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,125,098 - 147,166,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,535,519 - 148,577,315 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,535,519 - 148,577,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,252,914 - 152,294,538 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,347,190 - 149,388,386 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5141,125,063 - 141,166,773 (-)NCBICelera
Cytogenetic Map5q36NCBI
Zcchc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,793,264 - 9,850,396 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,793,264 - 9,850,396 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,468,411 - 195,536,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,587,456 - 194,655,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,576,876 - 30,645,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,597,190 - 31,665,371 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,597,212 - 31,665,373 (+)Ensemblpanpan1.1panPan2
ZCCHC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,659,152 - 69,720,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,237,619 - 66,300,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,223,407 - 70,285,922 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,223,408 - 70,285,234 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,059,336 - 67,121,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,056,026 - 68,118,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,055,592 - 69,118,094 (-)NCBIUU_Cfam_GSD_1.0
Zcchc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,700,222 - 48,751,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,525,019 - 14,576,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,525,043 - 14,576,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,879,830 - 87,942,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,879,727 - 87,942,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,586,425 - 81,631,241 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,472,935 - 101,540,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,473,694 - 101,540,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,133,560 - 15,201,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476414,649,851 - 14,697,311 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in ZCCHC17
12 total Variants

1 to 10 of 33 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 1p36.11-35.2(chr1:26963045-32279045)x3 copy number gain See cases [RCV000051801] Chr1:26963045..32279045 [GRCh38]
Chr1:27289536..32744646 [GRCh37]
Chr1:27162123..32517233 [NCBI36]
Chr1:1p36.11-35.2
pathogenic
GRCh38/hg38 1p35.2-35.1(chr1:31122108-32402160)x3 copy number gain See cases [RCV000051802] Chr1:31122108..32402160 [GRCh38]
Chr1:31594955..32867761 [GRCh37]
Chr1:31367542..32640348 [NCBI36]
Chr1:1p35.2-35.1
pathogenic
GRCh38/hg38 1p35.2-35.1(chr1:30766758-33359428)x1 copy number loss See cases [RCV000053802] Chr1:30766758..33359428 [GRCh38]
Chr1:31239605..33825029 [GRCh37]
Chr1:31012192..33597616 [NCBI36]
Chr1:1p35.2-35.1
pathogenic
GRCh38/hg38 1p35.3-35.1(chr1:28424867-33122854)x1 copy number loss See cases [RCV000135447] Chr1:28424867..33122854 [GRCh38]
Chr1:28751378..33588455 [GRCh37]
Chr1:28623965..33361042 [NCBI36]
Chr1:1p35.3-35.1
pathogenic
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2
pathogenic
GRCh38/hg38 1p35.2(chr1:30864842-32021241)x3 copy number gain See cases [RCV000142920] Chr1:30864842..32021241 [GRCh38]
Chr1:31337689..32486842 [GRCh37]
Chr1:31110276..32259429 [NCBI36]
Chr1:1p35.2
uncertain significance
GRCh38/hg38 1p35.2(chr1:30811959-31402772)x1 copy number loss See cases [RCV000142718] Chr1:30811959..31402772 [GRCh38]
Chr1:31284806..31872758 [GRCh37]
Chr1:31057393..31648206 [NCBI36]
Chr1:1p35.2
uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
1 to 10 of 33 rows

Predicted Target Of
Summary Value
Count of predictions:1538
Count of miRNA genes:614
Interacting mature miRNAs:703
Transcripts:ENST00000344147, ENST00000373714, ENST00000422613, ENST00000479629, ENST00000490049, ENST00000546109
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597205154GWAS1301228_Hprotein measurement QTL GWAS1301228 (human)6e-10protein measurement13133009531330096Human
597345606GWAS1441680_Hcolor vision disorder QTL GWAS1441680 (human)0.0000007color vision disorder13132350731323508Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597213861GWAS1309935_Hprotein measurement QTL GWAS1309935 (human)1e-08protein measurement13133009531330096Human
597094376GWAS1190450_Hschizophrenia QTL GWAS1190450 (human)0.000004schizophrenia13135902331359024Human
597141065GWAS1237139_Hurinary microalbumin measurement QTL GWAS1237139 (human)4e-08urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)13136052331360524Human

SHGC-74490  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37131,828,445 - 31,828,687UniSTSGRCh37
Build 36131,601,032 - 31,601,274RGDNCBI36
Celera130,085,015 - 30,085,257RGD
Cytogenetic Map1p35.2UniSTS
HuRef129,935,221 - 29,935,463UniSTS
TNG Radiation Hybrid Map114825.0UniSTS
GeneMap99-GB4 RH Map194.52UniSTS
NCBI RH Map1142.5UniSTS
D1S1430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37131,835,644 - 31,835,834UniSTSGRCh37
Build 36131,608,231 - 31,608,421RGDNCBI36
Celera130,092,214 - 30,092,404RGD
Cytogenetic Map1p35.2UniSTS
HuRef129,942,420 - 29,942,610UniSTS
SHGC-143051  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37131,799,709 - 31,800,003UniSTSGRCh37
Build 36131,572,296 - 31,572,590RGDNCBI36
Celera130,056,207 - 30,056,501RGD
Cytogenetic Map1p35.2UniSTS
HuRef129,906,405 - 29,906,699UniSTS
TNG Radiation Hybrid Map114809.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 30 of 38 rows
RefSeq Transcripts NM_001282566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006710681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047422508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF151077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF151085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF247661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL451070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX877842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX879219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX881170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF309574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 38 rows

Ensembl Acc Id: ENST00000344147   ⟹   ENSP00000343557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,297,032 - 31,364,936 (+)Ensembl
Ensembl Acc Id: ENST00000373714   ⟹   ENSP00000362819
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,297,008 - 31,364,936 (+)Ensembl
Ensembl Acc Id: ENST00000479629
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,998 - 31,348,968 (+)Ensembl
Ensembl Acc Id: ENST00000546109   ⟹   ENSP00000444742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)Ensembl
Ensembl Acc Id: ENST00000615916   ⟹   ENSP00000480986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)Ensembl
Ensembl Acc Id: ENST00000616393   ⟹   ENSP00000482122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)Ensembl
Ensembl Acc Id: ENST00000616859   ⟹   ENSP00000481743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)Ensembl
Ensembl Acc Id: ENST00000618216   ⟹   ENSP00000481299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)Ensembl
Ensembl Acc Id: ENST00000627541   ⟹   ENSP00000486079
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl131,297,036 - 31,364,552 (+)Ensembl
RefSeq Acc Id: NM_001282566   ⟹   NP_001269495
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282567   ⟹   NP_001269496
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282568   ⟹   NP_001269497
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282569   ⟹   NP_001269498
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282570   ⟹   NP_001269499
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282571   ⟹   NP_001269500
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282572   ⟹   NP_001269501
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282573   ⟹   NP_001269502
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282574   ⟹   NP_001269503
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016505   ⟹   NP_057589
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
GRCh37131,769,832 - 31,838,569 (+)NCBI
Build 36131,542,429 - 31,610,367 (+)NCBI Archive
Celera130,026,341 - 30,094,350 (+)RGD
HuRef129,876,529 - 29,944,576 (+)NCBI
CHM1_1131,885,735 - 31,953,707 (+)NCBI
T2T-CHM13v2.0131,149,254 - 31,217,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047422508   ⟹   XP_047278464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,364,936 (+)NCBI
RefSeq Acc Id: XM_054336976   ⟹   XP_054192951
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0131,149,209 - 31,217,206 (+)NCBI
1 to 30 of 49 rows
Protein RefSeqs NP_001269495 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269496 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269497 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269498 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269499 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269500 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269501 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269502 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269503 (Get FASTA)   NCBI Sequence Viewer  
  NP_057589 (Get FASTA)   NCBI Sequence Viewer  
  XP_047278464 (Get FASTA)   NCBI Sequence Viewer  
  XP_054192951 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF36163 (Get FASTA)   NCBI Sequence Viewer  
  AAF36171 (Get FASTA)   NCBI Sequence Viewer  
  AAF72518 (Get FASTA)   NCBI Sequence Viewer  
  AAH00685 (Get FASTA)   NCBI Sequence Viewer  
  AAH07446 (Get FASTA)   NCBI Sequence Viewer  
  AAH50609 (Get FASTA)   NCBI Sequence Viewer  
  BAA91984 (Get FASTA)   NCBI Sequence Viewer  
  BAB14066 (Get FASTA)   NCBI Sequence Viewer  
  BAB14799 (Get FASTA)   NCBI Sequence Viewer  
  BAG63600 (Get FASTA)   NCBI Sequence Viewer  
  BAG63671 (Get FASTA)   NCBI Sequence Viewer  
  CAE89901 (Get FASTA)   NCBI Sequence Viewer  
  CAE90415 (Get FASTA)   NCBI Sequence Viewer  
  CAE91240 (Get FASTA)   NCBI Sequence Viewer  
  EAX07620 (Get FASTA)   NCBI Sequence Viewer  
  EAX07621 (Get FASTA)   NCBI Sequence Viewer  
  EAX07622 (Get FASTA)   NCBI Sequence Viewer  
  EAX07623 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 49 rows
1 to 5 of 20 rows
1 to 5 of 20 rows
RefSeq Acc Id: NP_057589   ⟸   NM_016505
- Peptide Label: isoform c
- UniProtKB: Q9NYG4 (UniProtKB/Swiss-Prot),   Q6PKH4 (UniProtKB/Swiss-Prot),   D3DPN4 (UniProtKB/Swiss-Prot),   B4DY38 (UniProtKB/Swiss-Prot),   Q9P0M8 (UniProtKB/Swiss-Prot),   Q9NP64 (UniProtKB/Swiss-Prot),   B4DYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269497   ⟸   NM_001282568
- Peptide Label: isoform c
- UniProtKB: Q9NYG4 (UniProtKB/Swiss-Prot),   Q6PKH4 (UniProtKB/Swiss-Prot),   D3DPN4 (UniProtKB/Swiss-Prot),   B4DY38 (UniProtKB/Swiss-Prot),   Q9P0M8 (UniProtKB/Swiss-Prot),   Q9NP64 (UniProtKB/Swiss-Prot),   B4DYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269495   ⟸   NM_001282566
- Peptide Label: isoform a
- UniProtKB: A0A087WXF8 (UniProtKB/TrEMBL),   B4DYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269498   ⟸   NM_001282569
- Peptide Label: isoform d
- UniProtKB: B4DYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269502   ⟸   NM_001282573
- Peptide Label: isoform h
- UniProtKB: A0A087WYF0 (UniProtKB/TrEMBL)
- Sequence:
CCHC-type   S1 motif

Name Modeler Protein Id AA Range Protein Structure
AF-Q9NP64-F1-model_v2 AlphaFold Q9NP64 1-241 view protein structure

RGD ID:6854782
Promoter ID:EPDNEW_H556
Type:initiation region
Name:ZCCHC17_1
Description:zinc finger CCHC-type containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38131,297,032 - 31,297,092EPDNEW
RGD ID:6786910
Promoter ID:HG_KWN:1738
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000373714,   NM_004814,   OTTHUMT00000010663,   OTTHUMT00000010664,   OTTHUMT00000010666,   OTTHUMT00000010667,   UC001BSQ.1,   UC009VTU.1,   UC009VTV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36131,541,216 - 31,542,587 (-)MPROMDB
RGD ID:6851068
Promoter ID:EP73331
Type:initiation region
Name:HS_HSPC251
Description:Putative S1 RNA binding domain protein.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 36131,542,466 - 31,542,526EPD


1 to 40 of 56 rows
Database
Acc Id
Source(s)
COSMIC ZCCHC17 COSMIC
Ensembl Genes ENSG00000121766 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000344147 ENTREZGENE
  ENST00000344147.10 UniProtKB/Swiss-Prot
  ENST00000373714 ENTREZGENE
  ENST00000373714.5 UniProtKB/Swiss-Prot
  ENST00000546109 ENTREZGENE
  ENST00000546109.5 UniProtKB/Swiss-Prot
  ENST00000615916 ENTREZGENE
  ENST00000615916.4 UniProtKB/TrEMBL
  ENST00000616393 ENTREZGENE
  ENST00000616393.4 UniProtKB/TrEMBL
  ENST00000616859 ENTREZGENE
  ENST00000616859.4 UniProtKB/TrEMBL
  ENST00000618216 ENTREZGENE
  ENST00000618216.4 UniProtKB/TrEMBL
  ENST00000627541 ENTREZGENE
  ENST00000627541.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000121766 GTEx
HGNC ID HGNC:30246 ENTREZGENE
Human Proteome Map ZCCHC17 Human Proteome Map
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S1_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZCCHC17_S1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51538 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 51538 ENTREZGENE
OMIM 619744 OMIM
PANTHER NUCLEOLAR PROTEIN OF 40 KDA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15838:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142670539 PharmGKB
PROSITE PS50126 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00316 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WXF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WXU5 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 56 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ZCCHC17  zinc finger CCHC-type containing 17    zinc finger, CCHC domain containing 17  Symbol and/or name change 5135510 APPROVED