Zcchc17 (zinc finger CCHC-type containing 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zcchc17 (zinc finger CCHC-type containing 17) Heterocephalus glaber
Analyze
Symbol: Zcchc17
Name: zinc finger CCHC-type containing 17
RGD ID: 18928280
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN RNA stabilization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Nucleolar protein of 40 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476414,649,851 - 14,697,311 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zcchc17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476414,649,851 - 14,697,311 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZCCHC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,297,032 - 31,364,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,296,982 - 31,364,953 (+)EnsemblGRCh38hg38GRCh38
GRCh37131,769,879 - 31,837,783 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,542,429 - 31,610,367 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,026,341 - 30,094,350 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,876,542 - 29,944,556 (+)NCBIHuRef
CHM1_1131,885,748 - 31,953,687 (+)NCBICHM1_1
T2T-CHM13v2.0131,149,209 - 31,217,206 (+)NCBIT2T-CHM13v2.0
Zcchc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,209,176 - 130,253,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,209,176 - 130,253,736 (-)EnsemblGRCm39 Ensembl
GRCm384130,315,383 - 130,359,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,315,383 - 130,359,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,993,329 - 130,037,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,818,205 - 129,840,890 (-)NCBIMGSCv36mm8
Celera4128,649,036 - 128,692,835 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Zcchc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,942,789 - 147,984,596 (-)NCBIGRCr8
mRatBN7.25142,658,626 - 142,700,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,658,589 - 142,700,426 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,357,901 - 145,399,693 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,127,707 - 147,169,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,125,098 - 147,166,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,535,519 - 148,577,315 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,535,519 - 148,577,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,252,914 - 152,294,538 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,347,190 - 149,388,386 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5141,125,063 - 141,166,773 (-)NCBICelera
Cytogenetic Map5q36NCBI
Zcchc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,793,264 - 9,850,396 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,793,264 - 9,850,396 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,468,411 - 195,536,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,587,456 - 194,655,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,576,876 - 30,645,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,597,190 - 31,665,371 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,597,212 - 31,665,373 (+)Ensemblpanpan1.1panPan2
ZCCHC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,659,152 - 69,720,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,237,619 - 66,300,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,223,407 - 70,285,922 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,223,408 - 70,285,234 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,059,336 - 67,121,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,056,026 - 68,118,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,055,592 - 69,118,094 (-)NCBIUU_Cfam_GSD_1.0
Zcchc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,700,222 - 48,751,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,525,019 - 14,576,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,525,043 - 14,576,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,879,830 - 87,942,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,879,727 - 87,942,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,586,425 - 81,631,241 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,472,935 - 101,540,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,473,694 - 101,540,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,133,560 - 15,201,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004850809   ⟹   XP_004850866
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,649,872 - 14,697,311 (+)NCBI
RefSeq Acc Id: XM_004850810   ⟹   XP_004850867
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,652,354 - 14,697,311 (+)NCBI
RefSeq Acc Id: XM_013074358   ⟹   XP_012929812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,649,872 - 14,696,522 (+)NCBI
RefSeq Acc Id: XM_013074359   ⟹   XP_012929813
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,649,851 - 14,697,311 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850866 (Get FASTA)   NCBI Sequence Viewer  
  XP_004850867 (Get FASTA)   NCBI Sequence Viewer  
  XP_012929812 (Get FASTA)   NCBI Sequence Viewer  
  XP_012929813 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07921 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027169
Reference Protein Sequences
RefSeq Acc Id: XP_012929813   ⟸   XM_013074359
- Peptide Label: isoform X2
- UniProtKB: G5BF60 (UniProtKB/TrEMBL),   G5C5L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850866   ⟸   XM_004850809
- Peptide Label: isoform X1
- UniProtKB: G5C5L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929812   ⟸   XM_013074358
- Peptide Label: isoform X4
- UniProtKB: G5BKY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850867   ⟸   XM_004850810
- Peptide Label: isoform X3
- UniProtKB: G5C5L2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019323 ENTREZGENE
Ensembl Transcript ENSHGLT00000027410 ENTREZGENE
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  S1_domain UniProtKB/TrEMBL
  ZCCHC17_S1 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
NCBI Gene Zcchc17 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN OF 40 KDA UniProtKB/TrEMBL
  PTHR15838:SF1 UniProtKB/TrEMBL
Pfam PF00575 UniProtKB/TrEMBL
PROSITE PS50126 UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
SMART SM00316 UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt G5BF60 ENTREZGENE, UniProtKB/TrEMBL
  G5BKY3 ENTREZGENE, UniProtKB/TrEMBL
  G5C5L2 ENTREZGENE, UniProtKB/TrEMBL