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Gene: Prdm2 (PR/SET domain 2) Rattus norvegicus
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Symbol: Prdm2
Name: PR/SET domain 2
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Involved in response to estradiol. Localizes to the nucleus. Orthologous to human PRDM2 (PR/SET domain 2); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: PR domain 2; PR domain containing 2, with ZNF domain; PR domain containing 2, with ZNF domain (mapped); PR domain zinc finger protein 2; PR domain-containing protein 2; Prdm2_mapped; retinoblastoma interacting zinc finger protein; retinoblastoma protein-binding zinc finger protein; retinoblastoma protein-interacting zinc finger protein; Riz; zinc finger protein RIZ
Orthologs:
Homo sapiens (human) : PRDM2 (PR/SET domain 2)  HGNC  Alliance
Mus musculus (house mouse) : Prdm2 (PR domain containing 2, with ZNF domain)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm2 (PR/SET domain 2)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM2 (PR/SET domain 2)
Canis lupus familiaris (dog) : PRDM2 (PR/SET domain 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm2 (PR/SET domain 2)
Sus scrofa (pig) : PRDM2 (PR/SET domain 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05161,769,587 - 161,879,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5161,770,653 - 161,879,133 (-)Ensembl
Rnor_5.05165,468,778 - 165,578,775 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45161,962,929 - 162,072,519 (-)NCBIRGSC3.4rn4RGSC3.4
Celera5153,753,320 - 153,860,334 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Prdm2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1594531
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.