Ssbp3 (single stranded DNA binding protein 3) - Rat Genome Database

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Gene: Ssbp3 (single stranded DNA binding protein 3) Rattus norvegicus
Analyze
Symbol: Ssbp3
Name: single stranded DNA binding protein 3
RGD ID: 621502
Description: Predicted to enable transcription coactivator activity. Predicted to be involved in several processes, including head morphogenesis; nervous system development; and positive regulation of anterior head development. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SSBP3 (single stranded DNA binding protein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102549605; MGC124589; sequence-specific single-stranded-DNA-binding protein; single-stranded DNA-binding protein 3; Ssdp; Ssdp3; uncharacterized LOC102549605
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,920,145 - 127,057,968 (+)NCBIGRCr8
mRatBN7.25121,691,370 - 121,828,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,691,393 - 121,827,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,310,490 - 124,447,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05126,033,508 - 126,170,510 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05126,084,812 - 126,221,819 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,511,339 - 126,649,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,364,154 - 130,500,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,987,980 - 128,127,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15127,993,205 - 128,132,997 (+)NCBI
Celera5120,438,879 - 120,575,397 (+)NCBICelera
Cytogenetic Map5q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium silicate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
diquat  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
PhIP  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
pyrogallol  (ISO)
rac-lactic acid  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Cloning of a cDNA encoding a sequence-specific single-stranded-DNA-binding protein from Rattus norvegicus. Raval-Fernandes S, etal., Gene 1999 Sep 3;237(1):201-7.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15857913   PMID:19323994   PMID:24029230   PMID:26494787  


Genomics

Comparative Map Data
Ssbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,920,145 - 127,057,968 (+)NCBIGRCr8
mRatBN7.25121,691,370 - 121,828,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,691,393 - 121,827,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,310,490 - 124,447,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05126,033,508 - 126,170,510 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05126,084,812 - 126,221,819 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,511,339 - 126,649,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,364,154 - 130,500,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,987,980 - 128,127,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15127,993,205 - 128,132,997 (+)NCBI
Celera5120,438,879 - 120,575,397 (+)NCBICelera
Cytogenetic Map5q34NCBI
SSBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,225,432 - 54,413,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,225,432 - 54,413,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37154,691,105 - 54,879,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,464,783 - 54,644,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 34154,404,615 - 54,583,917NCBI
Celera152,979,826 - 53,159,767 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef152,806,513 - 52,987,387 (-)NCBIHuRef
CHM1_1154,807,651 - 54,988,420 (-)NCBICHM1_1
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBIT2T-CHM13v2.0
Ssbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,768,667 - 106,906,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,767,898 - 106,906,891 (+)EnsemblGRCm39 Ensembl
GRCm384106,911,470 - 107,049,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,910,701 - 107,049,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,584,075 - 106,722,299 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,409,402 - 106,547,626 (+)NCBIMGSCv36mm8
Celera4105,272,425 - 105,410,615 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.9NCBI
Ssbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,901,151 - 5,047,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,901,150 - 5,049,341 (+)NCBIChiLan1.0ChiLan1.0
SSBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,429,230 - 172,608,737 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,570,463 - 171,749,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,501,656 - 53,680,682 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,094,800 - 55,281,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,094,820 - 55,272,207 (-)Ensemblpanpan1.1panPan2
SSBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,690,632 - 54,826,691 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,662,840 - 54,824,960 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,729,165 - 54,893,490 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0554,849,788 - 55,013,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl554,849,889 - 55,013,451 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1554,844,717 - 55,009,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,734,421 - 54,898,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0555,123,610 - 55,288,431 (+)NCBIUU_Cfam_GSD_1.0
Ssbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,458,512 - 68,614,243 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,802,052 - 6,956,129 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,802,057 - 6,957,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,911,493 - 158,081,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,911,583 - 158,081,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SSBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,528,630 - 78,708,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603338,577,763 - 38,758,509 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934161,054 - 311,937 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934161,323 - 313,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ssbp3
503 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000011408
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat

Markers in Region
AU046696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25121,770,462 - 121,770,625 (+)MAPPERmRatBN7.2
Rnor_6.05126,590,714 - 126,590,876NCBIRnor6.0
Rnor_5.05130,442,359 - 130,442,521UniSTSRnor5.0
RGSC_v3.45128,068,368 - 128,068,530UniSTSRGSC3.4
Celera5120,517,973 - 120,518,135UniSTS
Cytogenetic Map5q34UniSTS
RH130317  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85127,056,761 - 127,056,937 (+)Marker Load Pipeline
mRatBN7.25121,827,954 - 121,828,130 (+)MAPPERmRatBN7.2
Rnor_6.05126,648,624 - 126,648,799NCBIRnor6.0
Rnor_5.05130,499,421 - 130,499,596UniSTSRnor5.0
RGSC_v3.45128,127,711 - 128,127,886UniSTSRGSC3.4
Celera5120,575,337 - 120,575,512UniSTS
RH 3.4 Map5807.3UniSTS
Cytogenetic Map5q34UniSTS
AU047859  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.05130,420,058 - 130,420,280NCBIRnor5.0
RGSC_v3.45128,046,344 - 128,046,565UniSTSRGSC3.4
Celera5120,495,899 - 120,496,136UniSTS
Cytogenetic Map5q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF121893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY724490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011408   ⟹   ENSRNOP00000011408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5121,691,393 - 121,827,992 (+)Ensembl
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096305   ⟹   ENSRNOP00000082297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5121,691,693 - 121,827,983 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101748   ⟹   ENSRNOP00000089190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5121,691,393 - 121,827,722 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104386   ⟹   ENSRNOP00000080007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5121,691,393 - 121,827,992 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112504   ⟹   ENSRNOP00000095848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5121,691,693 - 121,827,983 (+)Ensembl
RefSeq Acc Id: NM_053358   ⟹   NP_445810
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,201 - 127,056,822 (+)NCBI
mRatBN7.25121,691,393 - 121,828,015 (+)NCBI
Rnor_6.05126,511,350 - 126,648,684 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
RGSC_v3.45127,987,980 - 128,127,771 (+)RGD
Celera5120,438,879 - 120,575,397 (+)RGD
Sequence:
RefSeq Acc Id: XM_006238532   ⟹   XP_006238594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,147 - 127,057,968 (+)NCBI
mRatBN7.25121,691,378 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238533   ⟹   XP_006238595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,150 - 127,057,968 (+)NCBI
mRatBN7.25121,691,380 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238534   ⟹   XP_006238596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,150 - 127,057,968 (+)NCBI
mRatBN7.25121,691,380 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238535   ⟹   XP_006238597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,154 - 127,057,968 (+)NCBI
mRatBN7.25121,691,382 - 121,828,031 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238536   ⟹   XP_006238598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,151 - 127,057,968 (+)NCBI
mRatBN7.25121,691,380 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238537   ⟹   XP_006238599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,154 - 127,057,968 (+)NCBI
mRatBN7.25121,691,382 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238538   ⟹   XP_006238600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,155 - 127,057,968 (+)NCBI
mRatBN7.25121,691,382 - 121,828,035 (+)NCBI
Rnor_6.05126,511,339 - 126,649,830 (+)NCBI
Rnor_5.05130,364,154 - 130,500,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593663   ⟹   XP_017449152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,995,585 - 127,057,968 (+)NCBI
mRatBN7.25121,765,459 - 121,828,035 (+)NCBI
Rnor_6.05126,585,536 - 126,649,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110867   ⟹   XP_038966795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,995,796 - 127,057,968 (+)NCBI
mRatBN7.25121,766,998 - 121,828,035 (+)NCBI
RefSeq Acc Id: XM_039110869   ⟹   XP_038966797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,962,355 - 127,057,968 (+)NCBI
mRatBN7.25121,728,992 - 121,828,035 (+)NCBI
RefSeq Acc Id: XM_039110871   ⟹   XP_038966799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,962,484 - 127,057,968 (+)NCBI
mRatBN7.25121,733,593 - 121,828,035 (+)NCBI
RefSeq Acc Id: XM_039110872   ⟹   XP_038966800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,963,952 - 127,057,968 (+)NCBI
mRatBN7.25121,735,417 - 121,828,031 (+)NCBI
RefSeq Acc Id: XM_039110873   ⟹   XP_038966801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85127,039,455 - 127,057,968 (+)NCBI
mRatBN7.25121,810,255 - 121,828,035 (+)NCBI
RefSeq Acc Id: XM_063288492   ⟹   XP_063144562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,145 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288493   ⟹   XP_063144563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,150 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288494   ⟹   XP_063144564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,150 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288495   ⟹   XP_063144565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,920,154 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288496   ⟹   XP_063144566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85126,995,808 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288497   ⟹   XP_063144567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85127,039,455 - 127,057,968 (+)NCBI
RefSeq Acc Id: XM_063288498   ⟹   XP_063144568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85127,039,455 - 127,057,968 (+)NCBI
Protein Sequences
Protein RefSeqs NP_445810 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238594 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238595 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238596 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238597 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238598 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238599 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238600 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449152 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966795 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966797 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966799 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966800 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966801 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144562 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144563 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144564 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144565 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144566 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144567 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144568 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD52710 (Get FASTA)   NCBI Sequence Viewer  
  AAI07667 (Get FASTA)   NCBI Sequence Viewer  
  EDL90453 (Get FASTA)   NCBI Sequence Viewer  
  EDL90454 (Get FASTA)   NCBI Sequence Viewer  
  EDL90455 (Get FASTA)   NCBI Sequence Viewer  
  EDL90456 (Get FASTA)   NCBI Sequence Viewer  
  EDL90457 (Get FASTA)   NCBI Sequence Viewer  
  EDL90458 (Get FASTA)   NCBI Sequence Viewer  
  EDL90459 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011408
  ENSRNOP00000011408.6
  ENSRNOP00000080007.1
  ENSRNOP00000082297
  ENSRNOP00000082297.1
  ENSRNOP00000089190
  ENSRNOP00000089190.1
  ENSRNOP00000095848.1
GenBank Protein Q9R050 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445810   ⟸   NM_053358
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot),   Q3B7C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238594   ⟸   XM_006238532
- Peptide Label: isoform X1
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006238596   ⟸   XM_006238534
- Peptide Label: isoform X3
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot),   A0A8I5ZWL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238595   ⟸   XM_006238533
- Peptide Label: isoform X2
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006238598   ⟸   XM_006238536
- Peptide Label: isoform X5
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006238597   ⟸   XM_006238535
- Peptide Label: isoform X4
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot),   A6JYP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238600   ⟸   XM_006238538
- Peptide Label: isoform X7
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot),   F7FHV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238599   ⟸   XM_006238537
- Peptide Label: isoform X6
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017449152   ⟸   XM_017593663
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000011408   ⟸   ENSRNOT00000011408
RefSeq Acc Id: XP_038966797   ⟸   XM_039110869
- Peptide Label: isoform X14
- UniProtKB: A6JYP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966799   ⟸   XM_039110871
- Peptide Label: isoform X16
- UniProtKB: A6JYP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966800   ⟸   XM_039110872
- Peptide Label: isoform X17
- UniProtKB: A6JYP9 (UniProtKB/TrEMBL),   A6JYP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966795   ⟸   XM_039110867
- Peptide Label: isoform X13
- UniProtKB: A6JYP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966801   ⟸   XM_039110873
- Peptide Label: isoform X18
Ensembl Acc Id: ENSRNOP00000080007   ⟸   ENSRNOT00000104386
Ensembl Acc Id: ENSRNOP00000089190   ⟸   ENSRNOT00000101748
Ensembl Acc Id: ENSRNOP00000082297   ⟸   ENSRNOT00000096305
Ensembl Acc Id: ENSRNOP00000095848   ⟸   ENSRNOT00000112504
RefSeq Acc Id: XP_063144562   ⟸   XM_063288492
- Peptide Label: isoform X8
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144564   ⟸   XM_063288494
- Peptide Label: isoform X11
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144563   ⟸   XM_063288493
- Peptide Label: isoform X10
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144565   ⟸   XM_063288495
- Peptide Label: isoform X12
- UniProtKB: Q9R050 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144566   ⟸   XM_063288496
- Peptide Label: isoform X15
- UniProtKB: A6JYP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144567   ⟸   XM_063288497
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063144568   ⟸   XM_063288498
- Peptide Label: isoform X20
Protein Domains
LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R050-F1-model_v2 AlphaFold Q9R050 1-361 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693886
Promoter ID:EPDNEW_R4411
Type:multiple initiation site
Name:Ssbp3_1
Description:single stranded DNA binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05126,511,336 - 126,511,396EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621502 AgrOrtholog
BioCyc Gene G2FUF-40433 BioCyc
Ensembl Genes ENSRNOG00000007920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011408 ENTREZGENE
  ENSRNOT00000011408.8 UniProtKB/TrEMBL
  ENSRNOT00000096305 ENTREZGENE
  ENSRNOT00000096305.1 UniProtKB/TrEMBL
  ENSRNOT00000101748 ENTREZGENE
  ENSRNOT00000101748.1 UniProtKB/TrEMBL
  ENSRNOT00000104386.1 UniProtKB/TrEMBL
  ENSRNOT00000112504.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936459 IMAGE-MGC_LOAD
InterPro LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSDP_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84354 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:124589 IMAGE-MGC_LOAD
NCBI Gene 84354 ENTREZGENE
PANTHER SINGLE STRANDED DNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SINGLE-STRANDED DNA-BINDING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SSDP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ssbp3 PhenoGen
PRINTS SSDNABINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007920 RatGTEx
SMART LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZWL0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB86_RAT UniProtKB/TrEMBL
  A0A8I6AME9_RAT UniProtKB/TrEMBL
  A0A8I6G610_RAT UniProtKB/TrEMBL
  A6JYP3 ENTREZGENE, UniProtKB/TrEMBL
  A6JYP5 ENTREZGENE, UniProtKB/TrEMBL
  A6JYP6_RAT UniProtKB/TrEMBL
  A6JYP9 ENTREZGENE, UniProtKB/TrEMBL
  F7FHV2 ENTREZGENE, UniProtKB/TrEMBL
  Q3B7C9 ENTREZGENE, UniProtKB/TrEMBL
  Q9R050 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Ssbp3  single stranded DNA binding protein 3  LOC102549605  uncharacterized LOC102549605  Data merged from RGD:7526971 737654 PROVISIONAL
2013-12-17 LOC102549605  uncharacterized LOC102549605      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Ssbp3  single stranded DNA binding protein 3  Ssdp3    Symbol updated 1299863 APPROVED
2004-04-22 Ssdp3  single stranded DNA binding protein 3  Ssdp  sequence-specific single-stranded-DNA-binding protein  Symbol and Name updated to reflect Human and Mouse nomenclature 625702 APPROVED
2002-08-07 Ssdp  sequence-specific single-stranded-DNA-binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology 80% homologous to the chicken gene 634142
gene_protein 361 amino acid protein with a mass of 37.7 kDa 634142