D5Rat103 Marker Search Result - Rat Genome Database

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Marker: D5Rat103

Symbol: D5Rat103
Previously known as: oxsts11021; R0084-D07; 
RGD ID: 39176
Expected Size: 191 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85149,642,129 - 149,642,320 (+)Marker Load Pipeline
mRatBN7.25144,358,090 - 144,358,281 (+)MAPPERmRatBN7.2
Rnor_6.05150,340,838 - 150,341,028NCBIRnor6.0
Rnor_5.05154,014,163 - 154,014,353UniSTSRnor5.0
RGSC_v3.45151,039,766 - 151,039,956UniSTSRGSC3.4
RGSC_v3.45151,039,725 - 151,039,965RGDRGSC3.4
RGSC_v3.15151,049,805 - 151,049,995RGD
Celera5142,792,480 - 142,792,670UniSTS
RH 3.4 Map5964.21UniSTS
RH 3.4 Map5964.21RGD
SHRSP x BN Map580.7699RGD
SHRSP x BN Map580.7699UniSTS
Cytogenetic Map5q36UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WKY/OlaHsd   LOU/CHan   MR/Pit   WF/Pit   SR/Jr   NP9   OKA/Wsl   P5C   SD/Rij   GK/KyoSwe   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   SS/Jr   COP/OlaHsd  
QTLs:   Bp180  
Genes:   Oprd1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GGATCATTGACCATTGGGAG
Reverse Primer GGAGGAATCCTGGACTCAGA
 
Template 
CCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGCAGGTACTCTGCAAAGAACACGGTC
CTCAGTTAGAGAGGAGGAATCCTGGACTCAGAGTCTCAAACTTTTTTTTTTTTTTTTGCTTTCC
AACACCACACAAGAGTGAAAATGTCCTCAATACACCTAAAGAACGTGTGCATGTGTGTGCGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCATACAATAGTTGAACTGAGGG
CTCCCAATGGTCAATGATCCCTACAAGAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGC
TGTTTCCTGTGTGAATTGTNTCCGCTCAATTCCA
Strain, Expected Size(s)

ACI/N 206 AVN/Orl 200 BBDP/Rhw 200
BBDR/Rhw 200 BC/CpbU 206 BDIX/Han 200
BDVII/Cub 200 BN-Lx/Cub 190 BN/SsNHsd 190
BP/Cub 200 BUF/Pit 200 COP/OlaHsd 206
DA/PitN 206 DON/Melb 206 F344/Pit 206
FHH/Eur 206 GH/Omr 200 GK/KyoSwe 196
IS/Kyo 196 LEW/Pit 200 LH/Mav 200
LN/Mav 200 LOU/CHan 200 MHS/Gib 200
MNRA/N 200 MR/Pit 200 NP9 200
OKA/Wsl 196 P5C 200 SD/Rij 200
SR/Jr 200 SS/Jr 200 WF/Pit 200
WKY/OlaHsd 200


GenBank Nucleotide CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat

1 to 10 of 41 rows


Database
Acc Id
Source(s)
NCBI Gene 24613 UniSTS
  444918 UniSTS