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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - ClinVar | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Dwarfism | ISO | RGD:1353626 | 8554872 | ClinVar Annotator: match by term: Short stature | ClinVar | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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References - curated| 1. | Clement LC, etal., Kidney Int. 2007 Aug;72(3):337-47. Epub 2007 Apr 25. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | Kitamura T, etal., Jpn J Cancer Res. 1995 Sep;86(9):811-8. |
| 4. | MGD data from the GO Consortium |
| 5. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 6. | RGD automated data pipeline |
| 7. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 8. | RGD automated import pipeline for gene-chemical interactions |
| 9. | RGD comprehensive gene curation |
| 10. | Siu B, etal., BMC Nephrol. 2006 Mar 15;7:6. |
| 11. | Sommer L, etal., Dev Dyn 1997 Jan;208(1):48-61. |
| 12. | Wharram BL, etal., J Clin Invest. 2000 Nov;106(10):1281-90. |
References - uncuratedComparative Map Data| Ptpru (Rattus norvegicus - Norway rat) |
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| PTPRU (Homo sapiens - human) |
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| Ptpru (Mus musculus - house mouse) |
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| Ptpru (Chinchilla lanigera - long-tailed chinchilla) |
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| PTPRU (Canis lupus familiaris - dog) |
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| Ptpru (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PTPRU (Sus scrofa - pig) |
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Position Markers| AW535311 |
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| RH134910 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 7 | 13 | 2 | 3 | 26 | 25 | 1 | 1 | ||||||||
| Low | 14 | 32 | 10 | 13 | 1 | 3 | 1 | 10 | 11 | 27 | 34 | 8 | 8 | |||
| Below cutoff | 1 | 11 | 3 | 7 | 14 |
Nucleotide Sequences| RefSeq Transcripts | NM_001191575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006238997 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006238998 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008764130 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07050068 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07050069 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01040011 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01106354 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U66566 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_001191575 ⟹ NP_001178504 | |||||||||||||||||||
| RefSeq Status: | PROVISIONAL | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
CTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGCTCCCGCTCGCCTTGGGhide sequence |
| RefSeq Acc Id: | XM_006238997 ⟹ XP_006239059 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGChide sequence |
| RefSeq Acc Id: | XM_006238998 ⟹ XP_006239060 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGChide sequence |
| RefSeq Acc Id: | XM_008764130 ⟹ XP_008762352 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTCGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACChide sequence |
| RefSeq Acc Id: | XM_017593120 ⟹ XP_017448609 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGChide sequence |
| RefSeq Acc Id: | XM_017593121 ⟹ XP_017448610 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TCGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGhide sequence |
| RefSeq Acc Id: | XM_017593122 ⟹ XP_017448611 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGTTCGGGCTCCCGCTCTGGACTGGGCGCCAGTCCCGCTCCGCGCGGCGCTGCTCCGCTACCGChide sequence |
Protein Sequences| Protein RefSeqs | NP_001178504 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006239059 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006239060 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008762352 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448609 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448610 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448611 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAB42210 | (Get FASTA) | NCBI Sequence Viewer |
| EDL80607 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001178504 ⟸ NM_001191575 |
| - Peptide Label: | precursor |
| - UniProtKB: | F1MAG7 (UniProtKB/TrEMBL) |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_006239060 ⟸ XM_006238998 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_006239059 ⟸ XM_006238997 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_008762352 ⟸ XM_008764130 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_017448610 ⟸ XM_017593121 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_017448611 ⟸ XM_017593122 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
| RefSeq Acc Id: | XP_017448609 ⟸ XM_017593120 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPAhide sequence |
TranscriptomePromoters| RGD ID: | 13694088 | |||||||||
| Promoter ID: | EPDNEW_R4612 | |||||||||
| Type: | single initiation site | |||||||||
| Name: | Ptpru_1 | |||||||||
| Description: | protein tyrosine phosphatase, receptor type, U | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Sequence Variants (Rnor 6.0)
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:620782 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000013515 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000030956 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000072635 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000036148 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000091637 | ENTREZGENE, UniProtKB/TrEMBL | |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/TrEMBL |
| 3.90.190.10 | UniProtKB/TrEMBL | |
| InterPro | ConA-like_dom | UniProtKB/TrEMBL |
| Fibronectin_type3 | UniProtKB/TrEMBL | |
| FN3_sf | UniProtKB/TrEMBL | |
| Ig-like_dom_sf | UniProtKB/TrEMBL | |
| Ig-like_fold | UniProtKB/TrEMBL | |
| Ig_sub | UniProtKB/TrEMBL | |
| MAM_dom | UniProtKB/TrEMBL | |
| Prot-tyrosine_phosphatase-like | UniProtKB/TrEMBL | |
| Tyr/Dual-sp_Pase | UniProtKB/TrEMBL | |
| Tyr_Pase_AS | UniProtKB/TrEMBL | |
| Tyr_Pase_cat | UniProtKB/TrEMBL | |
| Tyr_Pase_rcpt/non-rcpt | UniProtKB/TrEMBL | |
| KEGG Report | rno:116680 | UniProtKB/TrEMBL |
| NCBI Gene | 116680 | ENTREZGENE |
| Pfam | fn3 | UniProtKB/TrEMBL |
| MAM | UniProtKB/TrEMBL | |
| Y_phosphatase | UniProtKB/TrEMBL | |
| PhenoGen | Ptpru | PhenoGen |
| PRINTS | MAMDOMAIN | UniProtKB/TrEMBL |
| PRTYPHPHTASE | UniProtKB/TrEMBL | |
| PROSITE | FN3 | UniProtKB/TrEMBL |
| MAM_2 | UniProtKB/TrEMBL | |
| TYR_PHOSPHATASE_1 | UniProtKB/TrEMBL | |
| TYR_PHOSPHATASE_2 | UniProtKB/TrEMBL | |
| TYR_PHOSPHATASE_PTP | UniProtKB/TrEMBL | |
| SMART | FN3 | UniProtKB/TrEMBL |
| MAM | UniProtKB/TrEMBL | |
| PTPc | UniProtKB/TrEMBL | |
| PTPc_motif | UniProtKB/TrEMBL | |
| SM00409 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | ConA_like_lec_gl | UniProtKB/TrEMBL |
| FN_III-like | UniProtKB/TrEMBL | |
| SSF48726 | UniProtKB/TrEMBL | |
| SSF52799 | UniProtKB/TrEMBL | |
| UniGene | Rn.35625 | ENTREZGENE |
| UniProt | A0A0G2K3H0_RAT | UniProtKB/TrEMBL |
| F1MAG7 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2004-09-10 | Ptpru | protein tyrosine phosphatase, receptor type, U | Symbol and Name status set to approved | 1299863 | APPROVED | ||
| 2002-08-07 | Ptpru | protein tyrosine phosphatase, receptor type, U | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Ptpru | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 620782 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
