D5Rat31 Marker Search Result - Rat Genome Database

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Marker: D5Rat31

Symbol: D5Rat31
Previously known as: oxsts7193; R041-C04; R0041-C04; 
RGD ID: 36677
Expected Size: 174 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25133,011,384 - 133,011,550 (+)MAPPERmRatBN7.2
Rnor_6.05138,454,074 - 138,454,239NCBIRnor6.0
Rnor_5.05142,265,201 - 142,265,366UniSTSRnor5.0
RGSC_v3.45139,996,029 - 139,996,194UniSTSRGSC3.4
RGSC_v3.45139,996,028 - 139,996,194RGDRGSC3.4
RGSC_v3.15140,001,255 - 140,001,420RGD
Celera5131,535,894 - 131,536,059UniSTS
RH 3.4 Map5868.1RGD
RH 3.4 Map5868.1UniSTS
RH 2.0 Map5860.3RGD
SHRSP x BN Map570.6499RGD
FHH x ACI Map570.92RGD
Cytogenetic Map5q36UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SS.LEW-(D5Rat130-D5Rat31)/JrMcwi  
QTLs:   Rf54  
Genes:   Ccdc30   RGD1565923  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GACTCCATGGTGGAAGGAGA
Reverse Primer CCTTAGCACTCTGCTTTATTGTAA
 
Template 
CAGGGCGAGGGGTGCATGCCTGCAGGTGGACTCTAGAGGATCCCCACCTTAGCACTCTGCTTTA
TTGTAACTTTTTTATTTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGCATGCAATCTCACACTGTGGAGTGTGTGGAGGTTTGGGAATAGTTTTAGGAGTAG
CTTCTCTCCTTCCACCATGGAGTCTAGGATTGAATACAGGTCATCATTGTGGGTACCGAGCTCG
AATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACA
ACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATT
AATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGA
ATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACA
GTGAGACGGCACACTGATTGCCTTCACGCTGCCTGAGAGATTCACANCGGTCAGTGGTTTCC
Strain, Expected Size(s)

ACI/N 168 AVN/Orl 166 BBDP/Rhw 166
BBDR/Rhw 166 BC/CpbU 166 BDIX/Han 174
BDVII/Cub 174 BN-Lx/Cub 168 BN/SsNHsd 168
BP/Cub 172 BUF/Pit 174 COP/OlaHsd 166
DA/PitN 168 DON/Melb 166 F344/Pit 166
FHH/Eur 172 GH/Omr 174 GK/KyoSwe 166
IS/Kyo 172 LE/Mol 168 LEW/Pit 168
LH/Mav 174 LN/Mav 174 LOU/CHan 168
M520/N 172 MHS/Gib 166 MNR/N 176
MNRA/N 166 MNS/Gib 166 MR/Pit 176
NEDH/K 168 ODU/N 166 OKA/Wsl 172
OM/Ztm 172 P5C 166 PVG/Pit 166
SD/Rij 158 SHR/OlaHsd 172 SHRSP/Riv 172
SR/Jr 174 SS/Jr 172 WAG/RijKyo 168
WF/Pit 166 WIST/Nhg 168 WKY/OlaHsd 172
WN/N 166 WTC/Kyo 172


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1305604Ccdc30coiled-coil domain containing 305132926767133019635Rat
GenBank Nucleotide CH474008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128071929134724733Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat

1 to 10 of 47 rows


Database
Acc Id
Source(s)
NCBI Gene 100303204 UniSTS
  362580 UniSTS
  500539 UniSTS