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Gene: Tut4 (terminal uridylyl transferase 4) Rattus norvegicus

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Symbol:

Tut4

Name:

terminal uridylyl transferase 4

RGD ID:

1310138

Description:

Predicted to enable RNA uridylyltransferase activity and miRNA binding activity. Predicted to be involved in several processes, including RNA metabolic process; interleukin-6-mediated signaling pathway; and positive regulation of macromolecule metabolic process. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and regulation of lipopolysaccharide-mediated signaling pathway. Predicted to be located in cytoplasmic ribonucleoprotein granule; cytosol; and nucleolus. Human ortholog(s) of this gene implicated in liver benign neoplasm. Orthologous to human TUT4 (terminal uridylyl transferase 4); PARTICIPATES IN microRNA pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313481; terminal uridylyltransferase 4; Zcchc11; zinc finger CCHC-type containing 11; zinc finger, CCHC domain containing 11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TUT4 (terminal uridylyl transferase 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Tut4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tut4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TUT4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TUT4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tut4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TUT4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TUT4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tut4 (terminal uridylyl transferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ITPRIPL2 (ITPRIP like 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TUT4 (terminal uridylyl transferase 4)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tut4 (terminal uridylyl transferase 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cid-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pup-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tut4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	128,354,975 - 128,535,288 (+)	NCBI		GRCr8
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	123,203,003 - 123,306,465 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	125,825,672 - 125,929,216 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	127,548,743 - 127,652,301 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	127,600,037 - 127,703,592 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	128,063,880 - 128,168,726 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	128,083,118 - 128,168,207 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	131,905,082 - 132,009,237 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	129,565,023 - 129,860,103 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	129,590,506 - 129,865,448 (+)	NCBI
Celera	5	121,938,291 - 122,041,113 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

liver benign neoplasm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

choline (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

nicotine (ISO)

oxaliplatin (EXP)

phenytoin (EXP)

pirinixic acid (ISO)

resveratrol (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

histone mRNA catabolic process (ISO)

interleukin-6-mediated signaling pathway (ISO)

miRNA catabolic process (ISO)

miRNA metabolic process (ISO)

negative regulation of NF-kappaB transcription factor activity (ISO)

oocyte maturation (ISO)

polyuridylation-dependent mRNA catabolic process (ISO)

positive regulation of interleukin-6 production (ISO)

pre-miRNA processing (ISO)

regulation of lipopolysaccharide-mediated signaling pathway (ISO)

RNA 3'-end processing (ISO)

RNA metabolic process (IEA)

stem cell population maintenance (ISO)

transposable element silencing by mRNA destabilization (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic ribonucleoprotein granule (ISO)

cytosol (ISO)

nucleolus (ISO)

nucleus (ISO)

Molecular Function

miRNA binding (ISO)

nucleic acid binding (IEA)

nucleotidyltransferase activity (IEA)

protein binding (ISO)

RNA uridylyltransferase activity (IBA,ISO)

transferase activity (IEA)

uridylyltransferase activity (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	miR-26a enhances miRNA biogenesis by targeting Lin28B and Zcchc11 to suppress tumor growth and metastasis.	Fu X, etal., Oncogene. 2014 Aug 21;33(34):4296-306. doi: 10.1038/onc.2013.385. Epub 2013 Sep 23.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	E2F1 and KIAA0191 expression predicts breast cancer patient survival.	Hallett RM and Hassell JA, BMC Res Notes. 2011 Mar 31;4:95. doi: 10.1186/1756-0500-4-95.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	The long and short of microRNA.	Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003.

Additional References at PubMed

PMID:16643855	PMID:18172165	PMID:19056867	PMID:19701194	PMID:19703396	PMID:22658674	PMID:22664934	PMID:22681889	PMID:25979828	PMID:28671666	PMID:28792939	PMID:30122351

Genomics

Comparative Map Data

Tut4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	128,354,975 - 128,535,288 (+)	NCBI		GRCr8
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	123,203,003 - 123,306,465 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	125,825,672 - 125,929,216 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	127,548,743 - 127,652,301 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	127,600,037 - 127,703,592 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	128,063,880 - 128,168,726 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	128,083,118 - 128,168,207 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	131,905,082 - 132,009,237 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	129,565,023 - 129,860,103 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	129,590,506 - 129,865,448 (+)	NCBI
Celera	5	121,938,291 - 122,041,113 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

TUT4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	52,423,275 - 52,553,463 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	52,408,282 - 52,553,487 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	52,888,947 - 53,018,764 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	52,661,535 - 52,791,331 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	51,175,645 - 51,305,459 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	51,004,891 - 51,134,679 (-)	NCBI		HuRef
CHM1_1	1	53,006,328 - 53,136,112 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	52,304,743 - 52,434,560 (-)	NCBI		T2T-CHM13v2.0

Tut4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	108,316,607 - 108,416,612 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	108,316,623 - 108,416,618 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	108,459,410 - 108,559,415 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	108,459,426 - 108,559,421 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	108,132,031 - 108,232,020 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	107,957,358 - 108,057,347 (+)	NCBI		MGSCv36	mm8
Celera	4	106,802,820 - 106,902,634 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.55	NCBI

Tut4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	6,646,245 - 6,734,066 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	6,610,350 - 6,734,606 (+)	NCBI	ChiLan1.0	ChiLan1.0

TUT4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	174,295,626 - 174,426,251 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	173,438,248 - 173,582,113 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	51,684,408 - 51,815,059 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	53,292,477 - 53,422,893 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	53,292,477 - 53,422,893 (-)	Ensembl	panpan1.1		panPan2

TUT4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	8,832,208 - 8,958,136 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	8,832,199 - 9,047,152 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	8,984,410 - 9,117,778 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	8,955,383 - 9,088,939 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	8,955,377 - 9,067,361 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	8,768,557 - 8,901,969 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	8,857,421 - 8,990,869 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	8,874,086 - 9,008,805 (+)	NCBI		UU_Cfam_GSD_1.0

Tut4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	66,857,291 - 66,946,802 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	8,469,443 - 8,560,447 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	8,468,092 - 8,560,453 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TUT4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	159,692,797 - 159,793,758 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	159,655,658 - 159,794,450 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	147,319,840 - 147,467,514 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TUT4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	80,395,484 - 80,522,442 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	80,395,581 - 80,523,671 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	36,748,099 - 36,875,297 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tut4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	675,754 - 800,343 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	676,112 - 800,894 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tut4
288 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1582230	Bw78	Body weight QTL 78	3.2	0.0016	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	119085612	128034027	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
7794739	Bp372	Blood pressure QTL 372		0.0058	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	117913688	125222967	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

Markers in Region

RH140592

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	123,281,631 - 123,281,811 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	128,143,484 - 128,143,663	NCBI	Rnor6.0
Rnor_5.0	5	131,983,901 - 131,984,080	UniSTS	Rnor5.0
RGSC_v3.4	5	129,811,182 - 129,811,361	UniSTS	RGSC3.4
Celera	5	122,016,428 - 122,016,607	UniSTS
RH 3.4 Map	5	809.2	UniSTS
Cytogenetic Map	5	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079161 ⟹ ENSRNOP00000070861

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,203,003 - 123,306,465 (+)	Ensembl
Rnor_6.0 Ensembl	5	128,083,118 - 128,168,207 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096908 ⟹ ENSRNOP00000087360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,203,003 - 123,306,465 (+)	Ensembl

RefSeq Acc Id:

NM_001107953 ⟹ NP_001101423

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,431,719 - 128,535,171 (+)	NCBI
mRatBN7.2	5	123,203,003 - 123,306,465 (+)	NCBI
Rnor_6.0	5	128,063,880 - 128,168,726 (+)	NCBI
Rnor_5.0	5	131,905,082 - 132,009,237 (+)	NCBI
RGSC_v3.4	5	129,565,023 - 129,860,103 (+)	RGD
Celera	5	121,938,291 - 122,041,113 (+)	RGD

Sequence:

show sequence

TCGCGCCGCTCCCTGGCGTCGGCGTGCTGGACCGCAAGACCCTCTCCTTGCAGGCTCGCTACAG
CCAGCAAGTCGCGGGTAGCTCCGACCCTTTCCCTCCTCGGGGGCCCGCCCCCAGCTCGGGCGCA
GACGAGAGCCCGCGCGCGCTCGCTCGCTCTCCTCAGCGCGGTTTGCTTGCCTAAACTAGATTTG
GAACAGTTCATATACCTGAGACCTGCCATTTTACAGTATCAAATTGGGAAGAATCAGATTTTCA
AATAATGGAAGAGCCCAAGACTTCTAAAAACGAAAATCATGAACCAAAGAAGAATATTATTTGT
GAAGAAAGCAAAGCAGTTAAAATTATAACTAATCAAACCTTGAAGCCTAGAAATGATAAGTCCA
TGACAGAAATTGGGACCAGCTCTCTGAATAGAAATAGTAGTAAAAAAACCAAGCAAAATGATAT
TTGTATAGAAAAAACAGAAGCTAAATCATGTAAAGTAAATGCTGCCAGTGTTCCAGGCCCTAAA
GATTTGGGGTTAGTACTTCGAGATCAAAGTCATTGCAAAGTGAAAAAGTTACCAAATTCACCCA
TGAAAGCCCAGAAGGGATCTTCACAGACAAAATTAGAAAAGGCACCTAGTTTACAGGCGAAAGC
AGAAAAAGTACCAAAGTCTCCGAATTTACCAGTAAAAGTAGAGAAAACGCCCTGTACAACAGCA
GCAGCAACAACAGAAAAAGCACTTAATTCACAGAGAAAAGAAGAAAACGTACCCACTTCTCAGA
TGAAATTACAGAAGACACCCAGATCACCTTTAGAGCCAGAAAATGTGCCTAGTTTACTGTTGAA
AGAAAATGTGAAACAGACAGAATCACAACAGACTGGGAAGAAACTTACAAGCTCCTTTGTTTCT
ATGGATAAAAGGAACAGTGCAGCTCTACAAGGAGAGAAGTCAACCCTGGAAAATTCATCACTAT
CTCAGAAGCAACAGACACAGGCAGATAATATTGCTGATTCTGATGACAGTGCTTCAGGGATGGA
AGATACATCAGATGATTTGAGTAAAATGAAGAATGAAGAATCTAACAAAGAAAATTCTTCCGAG
ATGGACTATTTAGAAAATGCCACTGTGATAGATGAATCTACTTTGACACCTGAGCAGAAGCTAG
GTTTGAAACAAGCAGAAGAACGTCTAGAAAGAGATCACATCTTTCGACTTGAAAAACGCTCACC
AGAATATACCAATTGCCGTTATCTATGCAAACTTTGCTTAATTCATATTGAAAACATCCAAGGA
GCACATAAACATATAAAAGAAAAACGACATAAGAAGAATATTTTGGAAAAACAAGAAGAGAGTG
AACTTCGATCTCTCCCATCTCCTTCCCCTGCTCACTTGGCTGCTTTAAGTGTTGCAGTTGTTGA
ATTAGCAAAAGAACAAGGAATAACAGATGATGACCTCAGAATCCGCCAGGACATTGTGGAGGAA
ATGTCAAAGGTTATAGTGACATTTTTACCAGCATTATATGTAGATGTGGAATCTGATTTTCATG
CTAAAGTTCCTGTTGTGGTGTGCAAAGATCGGAAAAGTGGTTTACTATGTAGAGTAAGTGCAGG
AAATGATATGGCATGTCTCACAACTGACTTACTTGCTGCTCTTGGCAAAGTGGAACCGGTCTTC
ACTCCCTTAGTGTTAGCTTTTCGCTATTGGGCTAAGTCTCCTTTAACATTGGAAGCACCAAATC
AGGTACCCCTTGGACAGTTGTGGTTGGAGCTGCTAAAATTTTACACACTGGATTTTGCTTTGGA
GGAATATGTCATATGTGTACGGATACAAGATATTTTAACTAGAGAGAACAAAAACTGGCCTAAA
AGACGGATAGCAATTGAAGATCCATTTTCAGTCAAGAGGAATGTTGCACGGAGCTTAAACAGCC
AGCTTGTATATGAATATGTTGTGGAGAGATTCAGGGCAGCTTATCGATATTTTGCCTGTCCCCA
AAGGAAGGGTGGAAATAAATCTACAGTGGATCTCAAGAAAAAAGAGAAAGGGAAGCTAAGCAAC
AAGAAACCAGTGAAGTCTGATTGCTCGGCAACCAATGGTTGTGTTCTTGGAGAAAGTACAGAAA
AAGTAAATATGGAACGAGGCCAACCTCTTAAACATGATGAAATGGAGTTTACGTCACAGAGATG
TATTGTTGATAATGACCGTTTATTGGTAAATGAACTAGGTTTGGCTGACCATGGACAAGATTCT
TCATCGCTTTCTACTGGCAGTGAAGGCAGTGAATTACAGCAAAAATCAGCTGAGAAACAAGGTG
ATTTAACACCTTCAGAAACTTCTTTAAAGAAGGAACTCAGCCAGTGTCATTGCACTGGGACCCC
TGATGGAGCTGGATCTGCTGGAACAGACTGTAGATCAAATTTAGAAATGGAGAGTTCACATCAG
ATTGTGTGCAACAACATATCTGCTACCTCTTGCAACTGCAAAGCTACAGAAGTTGCTTCTGACC
TTATTGATGATGATAACCTCCCCTCCCAGGAATTATATTATGTGTTTGATAAGTTTATTTTAAC
CTCTGGCAAGCCGCCAACAATAGTATGCAGCATCTGCAAAAAGGATGGCCATTCAAAAAATGAT
TGCCCAGAGGATTTCAGGAAAATTGATCTAAAACCTCTACCACCAATGACAAACCGATTTCGAG
AAATACTTGATTTAGTATGCAAAAGATGTTTTGATGAATTATCACCGCCTTGCTCTGAACAACA
CAACAGGGAACAAATTTTAATCGGCTTGGAAAAGTTTATTCAAAAAGAATATGATGAAAAAGCA
AGATTGTGCTTATTTGGTTCTTCTAAGAATGGATTTGGATTCCGTGATAGTGATTTGGATATTT
GTATGACTCTGGAAGGCCATGAGAATGCAGAGAAATTAAACTGTAAGGAAATAATTGAAAATTT
GGCGAAAATTCTTAAGAGGCATCCAGGTTTAAGAAACATTCTGCCTATAACTACTGCCAAAGTG
CCTATTGTAAAATTTGAACACAGGAGAAGTGGACTAGAAGGTGATATCAGTTTATATAACACAT
TGCGCTGTGACATTGGAGATGCGTCTCGAGGAAGTTTATCTTCATATGCTTATATCCTTATGGT
GCTGTACTTTCTGCAGCAACGAAAGCCACCAGTTATCCCAGTTCTGCAAGAGATCTTTGATGGA
AAGCAGATTCCACAGAGAATGGTGGATGGATGGAATGCCTTTTTCTTTGATAAAACAGAAGAAC
TGAAAAAGCGTTTACCTTCACTTGGAAAGAACACGGAATCACTAGGAGAGCTTTGGTTAGGACT
ACTTCGCTTCTATACTGAAGAGTTTGATTTCAAGGAATATGTAATCAGTATTCGGCAGAAAAAG
CTGCTCACTACTTTTGAAAAGCAGTGGACTTCTAAATGCATTGCAATTGAAGATCCTTTTGACT
TGAATCATAACCTTGGTGCTGGTGTTTCTAGAAAAATGACCAATTTTATTATGAAGGCATTTAT
CAATGGAAGGAAACTTTTTGGTACCCCCTTTTATCCACTCATTGGCAGAGAAGCTGAGTACTTC
TTTGATTCAAGAGTATTAACAGATGGAGAATTGGCTCCTAATGATCGGTGTTGTCGTGTGTGTG
GAAAAATAGGTCACTATATGAAAGACTGTCCCAAAAGGAAAAGACTAAAGAAGAAAGACAGTGA
AGAAGAGAAAGAAGGAAATGAAGAAGAAAAAGACTCCCGAGACCTTCTTGACTCCCGAGACCTT
AGGTGTTTCATATGTGGAGATGCCGGACATGTTCGCCGGGAATGCCCAGAGGTCAAGATGGCCC
GCCAGAGGAATAGCAGTGTAGCAGCAGCCCAGCTGGTTCGTAATCTTGTTAATGCTCAGCAGGT
GGCTGGTTCAGCCCAGCAACAGAGTGACCAGTCTATAAGGACTAGACAGTCTTCAGAGTGTTCT
GATTCACCATCTTATTCTCCTCAGCCTCAGCCTTTTCCACAGAATTCTCCCCAACCGTCTGCTC
TTCCCCCACCTCCATCCCAGCCAGGATCCCAGCCTAAGCTTGGCCCACCCCAGCAGGGAGGCCA
GCCCCCTCACCAGGTTCAGATGCCCTTGTATAACTTTCCTCCATCCCCTCCAGCTCATTACTCA
CCCATGCACGGTATGGGATTATTGCCAATGCACCCCCTCCAGATCCCTGCCCCGTCGTGGCCCA
TCCACGGCCCAATGCTGCACTCTGCACCTGGCAGTACCCCCAGCAATATTGGCTTGAATGATCC
CAGCATCATCTTTGCACAGCCTGCTGCCAGGCCGATGGCAATCCCTAGCTCTTCTCATGATGGA
CACTGGCCTCGTACCGTGGCTCCCAACTCCCTGGTGAACAATGGTGCAGTGGGTAATTCGGAGC
CACGTTTTCGAGGACTAAATCCTCCAATTCCATGGGAACATGCACCACGTCCCCATTTCCCCCT
TGTCCCAGCTTCGTGGCCTTATGGTTTGCATCAAAACTTCATGCATCAGGGAAATCCAAGATTT
CAGCCCAAACCCTTCTACGCTCAAGCAGAGAGATGTGCCACACGTCGCAGTAGAGAGCGTTGTC
CCCACCCACCACGAGGAAACGTGTCGGAATAATGCCAGCCCACAGCAACCAGCCAATCCTGATG
TCTCAAGGGTATCCGTACCTCAGTGTCAGTTACACTCAGCAGAAAAATTGACATTTAAGGAAAG
GAAAACAAATCAGGTCCTGATTTAAAATTTTAACACACGTTTAGATAGCTTATTTAAATTCTAA
GACTGTTTTTAAACACTGTATTATTTGTATATAAATATGAACTATAGTTTTTACTGGTATCACT
AAATTGAGTGATACAAATTTCATCTATTTTATTACCCTATTTTTAAGGGAATTTTATGTTTTGT
TTAACCTTGATGAATTGTATAAAGAGAGAATTTAAAAAATTACATTCTTTATTTTCTATTAGCT
GTATTCATACTTTGGTTGCTTCAGACTTTATATATATTGTTCTTAAGAATTAGGAAAGGATTTC
ATGTGTTTTAAATTTGTCACTTCTATTCTTTACAGAACCTTGTAGTGCCAAAAACTTTTTAAAA
GGTTAAAAAAAAAATAAAATTACAACATAAAGATTC

hide sequence

RefSeq Acc Id:

XM_039109972 ⟹ XP_038965900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI

RefSeq Acc Id:

XM_039109973 ⟹ XP_038965901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI

RefSeq Acc Id:

XM_039109974 ⟹ XP_038965902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI

RefSeq Acc Id:

XM_039109975 ⟹ XP_038965903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI

RefSeq Acc Id:

XM_039109976 ⟹ XP_038965904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI
mRatBN7.2	5	123,201,723 - 123,306,582 (+)	NCBI

RefSeq Acc Id:

XM_063287716 ⟹ XP_063143786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,533,690 (+)	NCBI

RefSeq Acc Id:

XM_063287718 ⟹ XP_063143788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,533,690 (+)	NCBI

RefSeq Acc Id:

XM_063287719 ⟹ XP_063143789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,354,975 - 128,533,690 (+)	NCBI

RefSeq Acc Id:

XM_063287720 ⟹ XP_063143790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,533,690 (+)	NCBI

RefSeq Acc Id:

XM_063287721 ⟹ XP_063143791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,533,690 (+)	NCBI

RefSeq Acc Id:

XM_063287722 ⟹ XP_063143792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,535,288 (+)	NCBI

RefSeq Acc Id:

XM_063287723 ⟹ XP_063143793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	128,430,456 - 128,533,690 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101423	(Get FASTA)	NCBI Sequence Viewer
	NP_001416068	(Get FASTA)	NCBI Sequence Viewer
	XP_038965900	(Get FASTA)	NCBI Sequence Viewer
	XP_038965901	(Get FASTA)	NCBI Sequence Viewer
	XP_038965902	(Get FASTA)	NCBI Sequence Viewer
	XP_038965903	(Get FASTA)	NCBI Sequence Viewer
	XP_038965904	(Get FASTA)	NCBI Sequence Viewer
	XP_063143786	(Get FASTA)	NCBI Sequence Viewer
	XP_063143788	(Get FASTA)	NCBI Sequence Viewer
	XP_063143789	(Get FASTA)	NCBI Sequence Viewer
	XP_063143790	(Get FASTA)	NCBI Sequence Viewer
	XP_063143791	(Get FASTA)	NCBI Sequence Viewer
	XP_063143792	(Get FASTA)	NCBI Sequence Viewer
	XP_063143793	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90403	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070861
	ENSRNOP00000070861.2
	ENSRNOP00000087360
	ENSRNOP00000087360.1
	ENSRNOP00000100961

RefSeq Acc Id:

NP_001101423 ⟸ NM_001107953

- UniProtKB:

A0A0G2JZ04 (UniProtKB/TrEMBL), A6JYV0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEPKTSKNENHEPKKNIICEESKAVKIITNQTLKPRNDKSMTEIGTSSLNRNSSKKTKQNDIC
IEKTEAKSCKVNAASVPGPKDLGLVLRDQSHCKVKKLPNSPMKAQKGSSQTKLEKAPSLQAKAE
KVPKSPNLPVKVEKTPCTTAAATTEKALNSQRKEENVPTSQMKLQKTPRSPLEPENVPSLLLKE
NVKQTESQQTGKKLTSSFVSMDKRNSAALQGEKSTLENSSLSQKQQTQADNIADSDDSASGMED
TSDDLSKMKNEESNKENSSEMDYLENATVIDESTLTPEQKLGLKQAEERLERDHIFRLEKRSPE
YTNCRYLCKLCLIHIENIQGAHKHIKEKRHKKNILEKQEESELRSLPSPSPAHLAALSVAVVEL
AKEQGITDDDLRIRQDIVEEMSKVIVTFLPALYVDVESDFHAKVPVVVCKDRKSGLLCRVSAGN
DMACLTTDLLAALGKVEPVFTPLVLAFRYWAKSPLTLEAPNQVPLGQLWLELLKFYTLDFALEE
YVICVRIQDILTRENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERFRAAYRYFACPQR
KGGNKSTVDLKKKEKGKLSNKKPVKSDCSATNGCVLGESTEKVNMERGQPLKHDEMEFTSQRCI
VDNDRLLVNELGLADHGQDSSSLSTGSEGSELQQKSAEKQGDLTPSETSLKKELSQCHCTGTPD
GAGSAGTDCRSNLEMESSHQIVCNNISATSCNCKATEVASDLIDDDNLPSQELYYVFDKFILTS
GKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMTNRFREILDLVCKRCFDELSPPCSEQHN
REQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLA
KILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLRCDIGDASRGSLSSYAYILMVL
YFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLGKNTESLGELWLGLL
RFYTEEFDFKEYVISIRQKKLLTTFEKQWTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFIN
GRKLFGTPFYPLIGREAEYFFDSRVLTDGELAPNDRCCRVCGKIGHYMKDCPKRKRLKKKDSEE
EKEGNEEEKDSRDLLDSRDLRCFICGDAGHVRRECPEVKMARQRNSSVAAAQLVRNLVNAQQVA
GSAQQQSDQSIRTRQSSECSDSPSYSPQPQPFPQNSPQPSALPPPPSQPGSQPKLGPPQQGGQP
PHQVQMPLYNFPPSPPAHYSPMHGMGLLPMHPLQIPAPSWPIHGPMLHSAPGSTPSNIGLNDPS
IIFAQPAARPMAIPSSSHDGHWPRTVAPNSLVNNGAVGNSEPRFRGLNPPIPWEHAPRPHFPLV
PASWPYGLHQNFMHQGNPRFQPKPFYAQAERCATRRSRERCPHPPRGNVSE

hide sequence

Ensembl Acc Id:

ENSRNOP00000070861 ⟸ ENSRNOT00000079161

RefSeq Acc Id:	XP_038965901 ⟸ XM_039109973
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038965900 ⟸ XM_039109972
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038965902 ⟸ XM_039109974
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038965903 ⟸ XM_039109975
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038965904 ⟸ XM_039109976
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000087360 ⟸ ENSRNOT00000096908

RefSeq Acc Id:	XP_063143789 ⟸ XM_063287719
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063143792 ⟸ XM_063287722
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GFX3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143788 ⟸ XM_063287718
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063143786 ⟸ XM_063287716
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063143790 ⟸ XM_063287720
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063143791 ⟸ XM_063287721
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063143793 ⟸ XM_063287723
- Peptide Label:	isoform X10

Protein Domains

CCHC-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZ04-F1-model_v2	AlphaFold	A0A0G2JZ04	1-1458	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310138	AgrOrtholog
BioCyc Gene	G2FUF-40386	BioCyc
Ensembl Genes	ENSRNOG00000052062	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079161	ENTREZGENE
	ENSRNOT00000079161.2	UniProtKB/TrEMBL
	ENSRNOT00000096908	ENTREZGENE
	ENSRNOT00000096908.1	UniProtKB/TrEMBL
	ENSRNOT00000124337	ENTREZGENE
Gene3D-CATH	1.10.1410.10	UniProtKB/TrEMBL
	3.30.460.10	UniProtKB/TrEMBL
	Zinc finger, CCHC-type	UniProtKB/TrEMBL
InterPro	MTPAP-like_central	UniProtKB/TrEMBL
	NT_sf	UniProtKB/TrEMBL
	PAP_assoc	UniProtKB/TrEMBL
	TUTase_dom	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
KEGG Report	rno:313481	UniProtKB/TrEMBL
NCBI Gene	313481	ENTREZGENE
PANTHER	4FE-4S FERREDOXIN-TYPE DOMAIN-CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	POLY A POLYMERASE CID PAP -RELATED	UniProtKB/TrEMBL
	TERMINAL URIDYLYLTRANSFERASE 4	UniProtKB/TrEMBL
Pfam	MTPAP-like_central	UniProtKB/TrEMBL
	PAP_assoc	UniProtKB/TrEMBL
	TUTase	UniProtKB/TrEMBL
	zf-CCHC	UniProtKB/TrEMBL
PhenoGen	Tut4	PhenoGen
PROSITE	ZF_CCHC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000052062	RatGTEx
SMART	ZnF_C2HC	UniProtKB/TrEMBL
Superfamily-SCOP	PAP/OAS1 substrate-binding domain	UniProtKB/TrEMBL
	SSF57756	UniProtKB/TrEMBL
	SSF81301	UniProtKB/TrEMBL
UniProt	A0A0G2JZ04	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GFX3	ENTREZGENE, UniProtKB/TrEMBL
	A6JYV0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-04-27	Tut4	terminal uridylyl transferase 4	Zcchc11	zinc finger CCHC-type containing 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-17	Zcchc11	zinc finger CCHC-type containing 11	Zcchc11	zinc finger, CCHC domain containing 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Zcchc11	zinc finger, CCHC domain containing 11	Zcchc11_predicted	zinc finger, CCHC domain containing 11 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zcchc11_predicted	zinc finger, CCHC domain containing 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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