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Gene: Fam229a (family with sequence similarity 229, member A) Rattus norvegicus

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Symbol:

Fam229a

Name:

family with sequence similarity 229, member A

RGD ID:

1564163

Description:

Orthologous to human FAM229A (family with sequence similarity 229 member A); INTERACTS WITH 3-chloropropane-1,2-diol; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC500554; LOC500554; RGD1564163; similar to RIKEN cDNA 1700025K23; uncharacterized protein LOC500554

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,114,054 - 147,115,043 (+)	NCBI		GRCr8
mRatBN7.2	5	141,829,716 - 141,830,705 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,828,664 - 141,830,705 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,531,059 - 144,532,031 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	146,300,882 - 146,301,854 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	146,297,409 - 146,298,398 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,692,391 - 147,693,380 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,692,391 - 147,693,380 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,413,457 - 151,414,446 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,647,727 - 148,648,716 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	140,305,249 - 140,306,238 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam229a	Rat	17beta-estradiol	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	Estradiol results in decreased expression of FAM229A mRNA	CTD	PMID:31614463
Fam229a	Rat	2,2',5,5'-tetrachlorobiphenyl	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	2 more ...	CTD	PMID:36804509
Fam229a	Rat	3-chloropropane-1,2-diol	decreases expression	EXP		6480464	alpha-Chlorohydrin results in decreased expression of FAM229A mRNA	CTD	PMID:28522335
Fam229a	Rat	aristolochic acid A	increases expression	ISO	FAM229A (Homo sapiens)	6480464	aristolochic acid I results in increased expression of FAM229A mRNA	CTD	PMID:33212167
Fam229a	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of FAM229A mRNA	CTD	PMID:25181051
Fam229a	Rat	cisplatin	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	Cisplatin results in decreased expression of FAM229A mRNA	CTD	PMID:27392435
Fam229a	Rat	clothianidin	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	clothianidin results in decreased expression of FAM229A mRNA	CTD	PMID:29044138
Fam229a	Rat	dextran sulfate	increases expression	ISO	Fam229a (Mus musculus)	6480464	Dextran Sulfate results in increased expression of FAM229A mRNA	CTD	PMID:35093514
Fam229a	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of FAM229A mRNA	CTD	PMID:29391264
Fam229a	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of FAM229A mRNA	CTD	PMID:33387578
Fam229a	Rat	leflunomide	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	leflunomide results in decreased expression of FAM229A mRNA	CTD	PMID:28988120
Fam229a	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of FAM229A mRNA	CTD	PMID:34492290
Fam229a	Rat	thiram	increases expression	ISO	FAM229A (Homo sapiens)	6480464	Thiram results in increased expression of FAM229A mRNA	CTD	PMID:38568856
Fam229a	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of FAM229A mRNA	CTD	PMID:33387578
Fam229a	Rat	triphenyl phosphate	affects expression	ISO	FAM229A (Homo sapiens)	6480464	triphenyl phosphate affects the expression of FAM229A mRNA	CTD	PMID:37042841
Fam229a	Rat	triptonide	increases expression	ISO	Fam229a (Mus musculus)	6480464	triptonide results in increased expression of FAM229A mRNA	CTD	PMID:33045310
Fam229a	Rat	valproic acid	decreases expression	ISO	FAM229A (Homo sapiens)	6480464	Valproic Acid results in decreased expression of FAM229A mRNA	CTD	PMID:29154799
Fam229a	Rat	valproic acid	increases methylation	ISO	FAM229A (Homo sapiens)	6480464	Valproic Acid results in increased methylation of FAM229A gene	CTD	PMID:29154799

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Fam229a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,114,054 - 147,115,043 (+)	NCBI		GRCr8
mRatBN7.2	5	141,829,716 - 141,830,705 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,828,664 - 141,830,705 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,531,059 - 144,532,031 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	146,300,882 - 146,301,854 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	146,297,409 - 146,298,398 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,692,391 - 147,693,380 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,692,391 - 147,693,380 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,413,457 - 151,414,446 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,647,727 - 148,648,716 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	140,305,249 - 140,306,238 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

FAM229A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,361,270 - 32,362,485 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,361,270 - 32,364,278 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	32,826,871 - 32,828,086 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	32,597,776 - 32,600,431 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	31,097,347 - 31,098,320 (-)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	30,942,251 - 30,943,224 (-)	NCBI		HuRef
CHM1_1	1	32,942,319 - 32,943,292 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,219,185 - 32,220,400 (-)	NCBI		T2T-CHM13v2.0

Fam229a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,384,983 - 129,385,749 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,384,983 - 129,385,749 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,491,190 - 129,491,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,491,190 - 129,491,956 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,168,434 - 129,169,200 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,993,503 - 128,994,509 (+)	NCBI		MGSCv36	mm8
Celera	4	127,832,331 - 127,833,097 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.26	NCBI

FAM229A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	194,464,722 - 194,465,645 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,586,165 - 193,591,626 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	31,646,769 - 31,648,924 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	32,652,878 - 32,653,593 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

FAM229A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,876,345 - 68,877,498 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,874,679 - 68,877,498 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,456,119 - 65,458,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,441,836 - 69,444,270 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,443,114 - 69,444,270 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	66,278,787 - 66,281,219 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	67,275,135 - 67,276,743 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	68,272,945 - 68,275,415 (+)	NCBI		UU_Cfam_GSD_1.0

Fam229a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,548,182 - 49,549,136 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,372,964 - 15,373,976 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,372,964 - 15,373,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM229A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	88,808,634 - 88,813,694 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	82,643,517 - 82,645,264 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM229A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	100,501,348 - 100,502,313 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	100,501,500 - 100,502,153 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	16,183,203 - 16,185,589 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam229a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,571,905 - 15,572,528 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,571,768 - 15,572,782 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fam229a
3 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	177
Count of miRNA genes:	120
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000064855
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

UniSTS:493030

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	141,829,715 - 141,830,382 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	147,692,391 - 147,693,057	NCBI	Rnor6.0
Rnor_5.0	5	151,413,457 - 151,414,123	UniSTS	Rnor5.0
RGSC_v3.4	5	148,647,727 - 148,648,393	UniSTS	RGSC3.4
Celera	5	140,305,249 - 140,305,915	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	87	86	55	25	55	6	214	97	93	45	60	31


RefSeq Transcripts	NM_001109266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064855 ⟹ ENSRNOP00000059148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	141,828,664 - 141,830,705 (+)	Ensembl
Rnor_6.0 Ensembl	5	147,692,391 - 147,693,380 (+)	Ensembl

RefSeq Acc Id:

NM_001109266 ⟹ NP_001102736

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,114,054 - 147,115,043 (+)	NCBI
mRatBN7.2	5	141,829,716 - 141,830,705 (+)	NCBI
Rnor_6.0	5	147,692,391 - 147,693,380 (+)	NCBI
Rnor_5.0	5	151,413,457 - 151,414,446 (+)	NCBI
RGSC_v3.4	5	148,647,727 - 148,648,716 (+)	RGD
Celera	5	140,305,249 - 140,306,238 (+)	RGD

Sequence:

show sequence

ATGCAGTCCTCCCCTTCGACGCTGGGGCCCGGGCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACCGGAGCGTCCTCCCGCGGCCAGGGCTCGGGCAGTTGCTTCCAGCCTGGGACCGGCCTCGGC
CTCCGGCAGAGTGCCCCGGGGCCTGGACATGAGTGCCCAGGAGACCCCACAGGGTCGAAGATTCCCCATTGAGGCCGGAGACTCCCCTGGCCTTGCCTCCGCCCCCGAGTCCCAGGATAGCCCGGAGC
CTGTAGCTACGGATCAAAACCCTGTCAGGCCGCTCCGACGCTGCCCGGGCTGCCACTGTCTGACGCTGCTGCACGTGCCCATCGACGTCTACCTGGCCATGGGCGGGAGCCCCCGGGCCCGTGCTACC
TGAGTGCGCCTGCGCACGGCAGCTCTGCAGGAGCCGGGACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACATTTTAAAATAAAAGAATGATGC
ACATTTTAATAAAGCACAGCATAAACTGTTCTTTCCACTCCGGGCTGGCCGTGTATGTGTATCCGTCGGATCATCGGGCCCACCGGCTTCTCTGACCCAGCCAGTATCAGATCTCTCCTATCCCTTGG
GCCACCTCCTCTCTTGGACCAGCCCTCCACCCGCCTCCACTTCCCTGCCCACCTTCCTCTAGGAGGTTGTCACCCTCTTTCTGGCGGTTACTACCCTTTCCCTGCAGAAATCTCCGGTTGTCAGTCTC
CCCGGTCTTGGGTTCACCAATGACATCTTCGTTTCTCT

hide sequence


Protein RefSeqs	NP_001102736	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80542	(Get FASTA)	NCBI Sequence Viewer
	EDL80543	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059148
	ENSRNOP00000059148.1

RefSeq Acc Id:	NP_001102736 ⟸ NM_001109266
- UniProtKB:	D4A5X2 (UniProtKB/TrEMBL), A6ISJ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQSSPSTLGPGRAADTCQAPPGPERPPAARARAVASSLGPASASGRVPRGLDMSAQETPQGRRFPIEAGDSPGLASAPESQDSPEPVATDQNPVRPLRRCPGCHCLTLLHVPIDVYLAMGGSPRARAT hide sequence

Ensembl Acc Id:

ENSRNOP00000059148 ⟸ ENSRNOT00000064855

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A5X2-F1-model_v2	AlphaFold	D4A5X2	1-128	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694065

Promoter ID:

EPDNEW_R4590

Type:

initiation region

Name:

Fam229a_1

Description:

family with sequence similarity 229, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	147,692,432 - 147,692,492	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-39799	BioCyc
Ensembl Genes	ENSRNOG00000042787	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064855	ENTREZGENE
	ENSRNOT00000064855.2	UniProtKB/TrEMBL
InterPro	FAM229	UniProtKB/TrEMBL
KEGG Report	rno:500554	UniProtKB/TrEMBL
NCBI Gene	500554	ENTREZGENE
PANTHER	PROTEIN FAM229A	UniProtKB/TrEMBL
	PTHR35355	UniProtKB/TrEMBL
Pfam	UPF0731	UniProtKB/TrEMBL
PhenoGen	Fam229a	PhenoGen
RatGTEx	ENSRNOG00000042787	RatGTEx
UniProt	A6ISJ1	ENTREZGENE, UniProtKB/TrEMBL
	D4A5X2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-02	Fam229a	family with sequence similarity 229, member A	RGD1564163	similar to RIKEN cDNA 1700025K23	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564163	similar to RIKEN cDNA 1700025K23	RGD1564163_predicted	similar to RIKEN cDNA 1700025K23 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564163_predicted	similar to RIKEN cDNA 1700025K23 (predicted)	LOC500554	similar to RIKEN cDNA 1700025K23	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500554	similar to RIKEN cDNA 1700025K23			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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