Kif2c (kinesin family member 2C) - Rat Genome Database

Name: Kif2c
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Kif2c (kinesin family member 2C) Rattus norvegicus

Analyze

Symbol:

Kif2c

Name:

kinesin family member 2C

RGD ID:

620239

Description:

Predicted to have microtubule plus-end binding activity. Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; microtubule cytoskeleton organization; and regulation of chromosome segregation. Predicted to colocalize with cytoplasmic microtubule. Orthologous to human KIF2C (kinesin family member 2C); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

kinesin-like protein KIF2C; kinesin-related protein 2; KRP2; MCAK; mitotic centromere-associated kinesin

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIF2C (kinesin family member 2C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Kif2c (kinesin family member 2C)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Kif2c (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIF2C (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIF2C (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kif2c (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIF2C (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	KIF2C (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kif2c (kinesin family member 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	KIF2C (kinesin family member 2C)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Kif2c (kinesin family member 2C)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	kif2c (kinesin family member 2C)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	klp-7	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Klp10A	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Klp59D	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	130,637,347 - 130,662,680 (-)	NCBI
Rnor_6.0 Ensembl	5	136,027,934 - 136,053,210 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	136,027,923 - 136,053,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	137,473,698 - 137,498,974 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	137,479,397 - 137,500,542 (-)	NCBI
Celera	5	129,158,808 - 129,184,100 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

colorectal cancer (ISO)

contact dermatitis (ISO)

COVID-19 (ISO)

hepatocellular carcinoma (ISO)

Neoplasm Metastasis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2,4-diaminotoluene (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

5-azacytidine (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

carmustine (EXP)

cefaloridine (EXP)

chloroprene (ISO)

cis-caffeic acid (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

deoxynivalenol (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

erythromycin estolate (EXP)

fenvalerate (EXP)

furan (EXP)

genistein (ISO)

geraniol (ISO)

glycidol (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

isoflavones (ISO)

leflunomide (ISO)

lucanthone (ISO)

menadione (ISO)

methotrexate (EXP)

methyl methanesulfonate (ISO)

N-acetyl-L-cysteine (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

palbociclib (ISO)

paracetamol (ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

phorbol 13-acetate 12-myristate (ISO)

phytoestrogen (ISO)

pirinixic acid (EXP)

piroxicam (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sophoraflavanone B (EXP)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

tioguanine (EXP)

topotecan (EXP)

trans-caffeic acid (ISO)

tremolite asbestos (ISO)

trimellitic anhydride (ISO)

troglitazone (ISO)

valproic acid (ISO)

zaragozic acid A (EXP,ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

attachment of mitotic spindle microtubules to kinetochore (IEA,ISO,ISS)

cell division (IEA)

establishment or maintenance of microtubule cytoskeleton polarity (IEA,ISO)

metaphase plate congression (ISO,ISS)

microtubule depolymerization (IEA,ISO)

microtubule-based movement (IBA,IEA)

mitotic metaphase plate congression (ISO,ISS)

regulation of chromosome segregation (IEA,ISO)

Cellular Component

centrosome (IBA)

chromosome, centromeric region (ISO)

condensed chromosome kinetochore (IEA)

cytoplasmic microtubule (ISS)

kinesin complex (IBA)

kinetochore (IEA,ISO,ISS)

microtubule (IBA,IEA)

microtubule cytoskeleton (ISO)

microtubule plus-end (IEA,ISO,ISS)

nucleus (IEA)

spindle (IBA)

Molecular Function

ATP binding (IEA)

ATP-dependent microtubule motor activity (IEA)

ATPase (IBA)

microtubule binding (IBA,IEA)

microtubule motor activity (IBA,IEA)

microtubule plus-end binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Ishikawa K, etal., Br J Cancer. 2008 Jun 3;98(11):1824-9. doi: 10.1038/sj.bjc.6604379. Epub 2008 May 27.
4.	MGD data from the GO Consortium
5.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	RGD automated data pipeline
7.	RGD automated import pipeline for gene-chemical interactions
8.	Sperry AO and Zhao LP, Mol Biol Cell 1996 Feb;7(2):289-305.

Additional References at PubMed

PMID:8889548	PMID:14718566	PMID:14960279	PMID:15775983	PMID:15843429	PMID:19060894	PMID:19283064	PMID:19632184	PMID:19946888	PMID:21820309	PMID:23891108

Genomics

Comparative Map Data

Kif2c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	130,637,347 - 130,662,680 (-)	NCBI
Rnor_6.0 Ensembl	5	136,027,934 - 136,053,210 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	136,027,923 - 136,053,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	137,473,698 - 137,498,974 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	137,479,397 - 137,500,542 (-)	NCBI
Celera	5	129,158,808 - 129,184,100 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

KIF2C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	44,739,818 - 44,767,767 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	44,739,704 - 44,767,767 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	45,205,509 - 45,233,439 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	44,978,138 - 45,006,003 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	44,874,643 - 44,902,506	NCBI
Celera	1	43,488,387 - 43,516,329 (+)	NCBI
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	43,319,109 - 43,346,516 (+)	NCBI		HuRef
CHM1_1	1	45,321,397 - 45,349,350 (+)	NCBI		CHM1_1

Kif2c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	117,016,830 - 117,039,821 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	117,016,836 - 117,039,836 (-)	Ensembl
GRCm38	4	117,159,633 - 117,182,624 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	117,159,639 - 117,182,639 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,832,239 - 116,855,229 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	116,657,593 - 116,680,496 (-)	NCBI			mm8
MGSCv36	4	114,927,056 - 114,944,901 (-)	NCBI			mm8
Celera	4	115,898,246 - 115,917,726 (-)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.42	NCBI

Kif2c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	13,453,217 - 13,475,322 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	13,453,637 - 13,475,447 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIF2C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	45,408,736 - 45,436,844 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	45,408,734 - 45,436,844 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	44,042,565 - 44,070,922 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

KIF2C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	15	15,558,021 - 15,579,217 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	15	15,558,024 - 15,579,371 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Kif2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936474	25,967,095 - 26,000,678 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF2C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	166,556,774 - 166,577,904 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	166,556,765 - 166,577,904 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	154,001,824 - 154,022,498 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF2C
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	88,023,250 - 88,054,715 (-)	NCBI
ChlSab1.1 Ensembl	20	88,023,207 - 88,055,176 (-)	Ensembl

Kif2c
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624906	633,635 - 660,149 (+)	NCBI

Position Markers

RH141804

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	136,028,064 - 136,028,243	NCBI	Rnor6.0
Rnor_5.0	5	139,821,131 - 139,821,310	UniSTS	Rnor5.0
RGSC_v3.4	5	137,473,828 - 137,474,007	UniSTS	RGSC3.4
Celera	5	129,158,947 - 129,159,126	UniSTS
RH 3.4 Map	5	853.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

UniSTS:237556

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	136,036,529 - 136,037,616	NCBI	Rnor6.0
Rnor_5.0	5	139,829,886 - 139,830,973	UniSTS	Rnor5.0
RGSC_v3.4	5	137,482,293 - 137,483,380	UniSTS	RGSC3.4
Celera	5	129,167,412 - 129,168,499	UniSTS
Cytogenetic Map	5	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31926122	136640934	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	56991667	137729065	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	71552569	157225114	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	84963058	173504662	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	91585539	136585539	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	91585539	136585539	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	91585539	136585539	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	91884213	136884213	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	93273130	138273130	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	97921932	149030144	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	100723739	153577831	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	101265591	141912026	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	102945579	154732228	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	107119214	152119214	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111278451	156278451	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112279412	157279412	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112279412	157279412	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112279412	157279412	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112279412	157279412	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112279412	157279412	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114140832	159140832	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114140832	159140832	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116767924	161767924	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116767924	161767924	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116767924	161767924	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116767924	161767924	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125455818	149568944	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125455818	157225114	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	128687766	173687766	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	129038716	139099229	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130531300	145726262	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	131077716	173707219	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132551937	173707219	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133313668	138454239	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133351969	140120264	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133943857	173707219	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133943857	173707219	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	134197905	173707219	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134502121	149030144	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134502140	157212422	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	134712342	173707219	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	134712342	173707219	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	508
Count of miRNA genes:	236
Interacting mature miRNAs:	296
Transcripts:	ENSRNOT00000025903, ENSRNOT00000068395
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	29	22	14	22			35	20	36
Low		10	22	14	5	14	5	5	25	11	5	11	5
Below cutoff		7	6	5		5	3	6	14	4			3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001085369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001305429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_134472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI060200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF289656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF552201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP498637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB806070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK596636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO403678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO575506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN805204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025903 ⟹ ENSRNOP00000025903

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	136,027,934 - 136,053,210 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000068395 ⟹ ENSRNOP00000061433

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	136,027,934 - 136,049,551 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079371 ⟹ ENSRNOP00000073031

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	136,028,408 - 136,049,569 (-)	Ensembl

RefSeq Acc Id:

NM_001085369 ⟹ NP_001078838

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,347 - 130,662,637 (-)	NCBI
Rnor_6.0	5	136,027,925 - 136,053,211 (-)	NCBI
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI
RGSC_v3.4	5	137,473,698 - 137,498,974 (-)	RGD
Celera	5	129,158,808 - 129,184,100 (-)	NCBI

Sequence:

show sequence

GGCGGCGTTAACACAGCTCAGTATCTGCAGAGTCGTGGTTTCTAAACTTCTTGCATTTGCGTTA
CCCGTTGCTGTTTCCGAGTCCATGGAGTCGCTTCACGCACGATTGTTTCCCGGTCTCTCCATCA
ACATTCAACGCAGCAATGGGTTAATTCACAGCGCCAATATAAGCACGGTGAACTTGGAGAAATC
CTGTGTTTCAGTGGAATGGACCGAAGGAGGTACCACAAAGGGCAAAGAGATTGACATTGACGAT
GTGGCTGCCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGAAGGACAGTCTGCCAC
TGCAGGAGAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTCCAAAATTCCAGGTCC
AAAAGAAGGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAAGTTCGAATCCCTGCT
CAGGAGAATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCAAGCCATTTCCCATTC
ACAGCCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTTGTTGATGATCAGCGAGGA
GGCAGAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAACCCTGGGAATTCAGTTCGG
AGGAAATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGCGAGAAGAGAAGAGGGCCC
AGAACTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAGCTTTCCAAACTGGGAATT
TGCCCGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCTCTCACTGTGACAGACCCT
ATTGAAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGAATAAACAAGAACTGGCCA
AGAAAGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCTGGTGCATGAACCCAAGCT
GAAAGTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTCGACTTTGCCTTTGATGAA
ACTGCTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGGTACAGACGATTTTTGAAG
GGGGGAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAAGACACACACAATGGGTGG
AGACCTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCAATGGCTTCCCGGGATGTC
TTCCTTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAGTTTATGTGACGTTCTTCG
AGATCTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAAGTTACGTGTGCTGGAGGA
CAGCAAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTTACCTGTGCCGATGATGTC
ATCAAGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAACATTTGCCAACTCCAATT
CCTCCCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGGGAGATTACACGGCAAATT
CTCTTTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCTAGTGCTGACCGACAGACT
CGCATGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGGAATGCATCCGGGCGCTGG
GACAGAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCAGGTGCTGAGGGACTCCTT
CATTGGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCGGGGATAAGCTCCTGTGAA
TACACTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGAGCCCCCACAGCGGGCCCA
GTGGAGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAGCTCTCATGGGGCCTCTCT
GACAGGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTTAATGAAGCCATGACTCAG
ATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCATACAGCAAGGACCAAGCT
GGCTTGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGAGACCTTCGTGAACAAGGC
AGAATCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCAGCCCTTCAAGAAGTCATC
AAGGCCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAACAAATAAACAGCAAGAAAC
GGCACCAATGATGACTTCAAATAAAGATCTGTTTGGTATCACACTAGCCTCTTCCCCTCCCCAG
AAAACTTCGGGCACCTCTGGCTTTGGTTAGGGCCTGAGTGGACAGGTTTTGGTAAATGTCAAGT
ACAGGGCGTCAAGCCCTGGAAAGCTTGGGGAGAGGCCATGTTCTTTTCCTCAGTTTGGATCAGG
AAGAAGGAACTTTAATGACTGTGCTTCCTCTCCTCCCTGTCAGGAGTGCTGTTTGATAGTTTCC
TGGTACAGCATCCAGCTGCTGGTAGAGAAGCTTCGAGATGCAGGCTCTGGCAGAGAAGCAGTGC
TTGTCCGGCTCCTGCTGCCTCTGGCTGCCAGCATCAATCACCTTTAGTCTGAGCGCTCTCGTGT
TTTATACTTTCAGAAAAAAGGTTTTGAGACCTCTTTGTTTTTGTTTTTGAAGCCTAAGAAAATC
TCTAGTTCTTGCTTTTTATGTATTTATATGTTGCACCTAACAATAAAGAAAAAAAAAACATTTT
GTGTGATTATCAG

hide sequence

RefSeq Acc Id:

NM_001305429 ⟹ NP_001292358

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,347 - 130,658,978 (-)	NCBI
Rnor_6.0	5	136,027,925 - 136,049,552 (-)	NCBI
Celera	5	129,158,808 - 129,180,435 (-)	NCBI

Sequence:

show sequence

GGAGAGCCAACTGGCGTAGGTCTGCTGTGGACTTCTGTGTGCCTGCCTGTCTGCCTTCCTCTCC
ACCTCAGTCTCCTCACTCAGTCTCCCTTGGCTTGGAAACTGGAAACCCATTCCATCTAGATGAT
TGACATTGACGATGTGGCTGCCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGAAG
GACAGTCTGCCACTGCAGGAGAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTCCA
AAATTCCAGGTCCAAAAGAAGGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAAGT
TCGAATCCCTGCTCAGGAGAATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCAAG
CCATTTCCCATTCACACAGGCCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTTGT
TGATGATCAGCGAGGAGGCAGAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAACCC
TGGGAATTCAGTTCGGAGGAAATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGCGA
GAAGAGAAGAGGGCCCAGAACTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAGCT
TTCCAAACTGGGAATTTGCCCGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCTCT
CACTGTGACAGACCCTATTGAAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGAAT
AAACAAGAACTGGCCAAGAAAGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCTGG
TGCATGAACCCAAGCTGAAAGTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTCGA
CTTTGCCTTTGATGAAACTGCTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGGTA
CAGACGATTTTTGAAGGGGGGAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAAGA
CACACACAATGGGTGGAGACCTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCAAT
GGCTTCCCGGGATGTCTTCCTTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAGTT
TATGTGACGTTCTTCGAGATCTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAAGT
TACGTGTGCTGGAGGACAGCAAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTTAC
CTGTGCCGATGATGTCATCAAGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAACA
TTTGCCAACTCCAATTCCTCCCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGGGA
GATTACACGGCAAATTCTCTTTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCTAG
TGCTGACCGACAGACTCGCATGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGGAA
TGCATCCGGGCGCTGGGACAGAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCAGG
TGCTGAGGGACTCCTTCATTGGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCGGG
GATAAGCTCCTGTGAATACACTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGAGC
CCCCACAGCGGGCCCAGTGGAGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAGCT
CTCATGGGGCCTCTCTGACAGGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTTAA
TGAAGCCATGACTCAGATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCATA
CAGCAAGGACCAAGCTGGCTTGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGAGA
CCTTCGTGAACAAGGCAGAATCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCAGC
CCTTCAAGAAGTCATCAAGGCCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAACAA
ATAAACAGCAAGAAACGGCACCAATGATGACTTCAAATAAAGATCTGTTTGGTATCACACTAGC
CTCTTCCCCTCCCCAGAAAACTTCGGGCACCTCTGGCTTTGGTTAGGGCCTGAGTGGACAGGTT
TTGGTAAATGTCAAGTACAGGGCGTCAAGCCCTGGAAAGCTTGGGGAGAGGCCATGTTCTTTTC
CTCAGTTTGGATCAGGAAGAAGGAACTTTAATGACTGTGCTTCCTCTCCTCCCTGTCAGGAGTG
CTGTTTGATAGTTTCCTGGTACAGCATCCAGCTGCTGGTAGAGAAGCTTCGAGATGCAGGCTCT
GGCAGAGAAGCAGTGCTTGTCCGGCTCCTGCTGCCTCTGGCTGCCAGCATCAATCACCTTTAGT
CTGAGCGCTCTCGTGTTTTATACTTTCAGAAAAAAGGTTTTGAGACCTCTTTGTTTTTGTTTTT
GAAGCCTAAGAAAATCTCTAGTTCTTGCTTTTTATGTATTTATATGTTGCACCTAACAATAAAG
AAAAAAAAAACATTTTGTGTGATTATCAG

hide sequence

RefSeq Acc Id:

NM_134472 ⟹ NP_608302

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,347 - 130,658,978 (-)	NCBI
Rnor_6.0	5	136,027,925 - 136,049,552 (-)	NCBI
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI
RGSC_v3.4	5	137,473,698 - 137,498,974 (-)	RGD
Celera	5	129,158,808 - 129,180,435 (-)	NCBI

Sequence:

show sequence

GGAGAGCCAACTGGCGTAGGTCTGCTGTGGACTTCTGTGTGCCTGCCTGTCTGCCTTCCTCTCC
ACCTCAGTCTCCTCACTCAGTCTCCCTTGGCTTGGAAACTGGAAACCCATTCCATCTAGATGAT
TGACATTGACGATGTGGCTGCCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGAAG
GACAGTCTGCCACTGCAGGAGAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTCCA
AAATTCCAGGTCCAAAAGAAGGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAAGT
TCGAATCCCTGCTCAGGAGAATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCAAG
CCATTTCCCATTCACAGCCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTTGTTGA
TGATCAGCGAGGAGGCAGAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAACCCTGG
GAATTCAGTTCGGAGGAAATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGCGAGAA
GAGAAGAGGGCCCAGAACTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAGCTTTC
CAAACTGGGAATTTGCCCGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCTCTCAC
TGTGACAGACCCTATTGAAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGAATAAA
CAAGAACTGGCCAAGAAAGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCTGGTGC
ATGAACCCAAGCTGAAAGTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTCGACTT
TGCCTTTGATGAAACTGCTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGGTACAG
ACGATTTTTGAAGGGGGGAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAAGACAC
ACACAATGGGTGGAGACCTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCAATGGC
TTCCCGGGATGTCTTCCTTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAGTTTAT
GTGACGTTCTTCGAGATCTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAAGTTAC
GTGTGCTGGAGGACAGCAAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTTACCTG
TGCCGATGATGTCATCAAGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAACATTT
GCCAACTCCAATTCCTCCCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGGGAGAT
TACACGGCAAATTCTCTTTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCTAGTGC
TGACCGACAGACTCGCATGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGGAATGC
ATCCGGGCGCTGGGACAGAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCAGGTGC
TGAGGGACTCCTTCATTGGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCGGGGAT
AAGCTCCTGTGAATACACTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGAGCCCC
CACAGCGGGCCCAGTGGAGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAGCTCTC
ATGGGGCCTCTCTGACAGGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTTAATGA
AGCCATGACTCAGATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCATACAG
CAAGGACCAAGCTGGCTTGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGAGACCT
TCGTGAACAAGGCAGAATCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCAGCCCT
TCAAGAAGTCATCAAGGCCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAACAAATA
AACAGCAAGAAACGGCACCAATGATGACTTCAAATAAAGATCTGTTTGGTATCACACTAGCCTC
TTCCCCTCCCCAGAAAACTTCGGGCACCTCTGGCTTTGGTTAGGGCCTGAGTGGACAGGTTTTG
GTAAATGTCAAGTACAGGGCGTCAAGCCCTGGAAAGCTTGGGGAGAGGCCATGTTCTTTTCCTC
AGTTTGGATCAGGAAGAAGGAACTTTAATGACTGTGCTTCCTCTCCTCCCTGTCAGGAGTGCTG
TTTGATAGTTTCCTGGTACAGCATCCAGCTGCTGGTAGAGAAGCTTCGAGATGCAGGCTCTGGC
AGAGAAGCAGTGCTTGTCCGGCTCCTGCTGCCTCTGGCTGCCAGCATCAATCACCTTTAGTCTG
AGCGCTCTCGTGTTTTATACTTTCAGAAAAAAGGTTTTGAGACCTCTTTGTTTTTGTTTTTGAA
GCCTAAGAAAATCTCTAGTTCTTGCTTTTTATGTATTTATATGTTGCACCTAACAATAAAGAAA
AAAAAAACATTTTGTGTGATTATCAG

hide sequence

RefSeq Acc Id:

XM_006238632 ⟹ XP_006238694

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,356 - 130,662,680 (-)	NCBI
Rnor_6.0	5	136,027,923 - 136,053,268 (-)	NCBI
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI

Sequence:

show sequence

TCGCACTGTTGACGTCGAAGGGACGCTGGCGCGCGGGATTTAAACTGCAGCGGTTTAGGCGGCG
TTAACACAGCTCAGTATCTGCAGAGTCGTGGTTTCTAAACTTCTTGCATTTGCGTTACCCGTTG
CTGTTTCCGAGTCCATGGAGTCGCTTCACGCACGATTGTTTCCCGGTCTCTCCATCAACATTCA
ACGCAGCAATGGGTTAATTCACAGCGCCAATATAAGCACGGTGAACTTGGAGAAATCCTGTGTT
TCAGTGGAATGGACCGAAGGAGGTACCACAAAGGGCAAAGAGATTGACATTGACGATGTGGCTG
CCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGAAGGACAGTCTGCCACTGCAGGA
GAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTCCAAAATTCCAGGTCCAAAAGAA
GGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAAGTTCGAATCCCTGCTCAGGAGA
ATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCAAGCCATTTCCCATTCACACAGG
CCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTTGTTGATGATCAGCGAGGAGGCA
GAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAACCCTGGGAATTCAGTTCGGAGGA
AATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGCGAGAAGAGAAGAGGGCCCAGAA
CTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAGCTTTCCAAACTGGGAATTTGCC
CGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCTCTCACTGTGACAGACCCTATTG
AAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGAATAAACAAGAACTGGCCAAGAA
AGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCTGGTGCATGAACCCAAGCTGAAA
GTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTCGACTTTGCCTTTGATGAAACTG
CTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGGTACAGACGATTTTTGAAGGGGG
GAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAAGACACACACAATGGGTGGAGAC
CTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCAATGGCTTCCCGGGATGTCTTCC
TTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAGTTTATGTGACGTTCTTCGAGAT
CTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAAGTTACGTGTGCTGGAGGACAGC
AAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTTACCTGTGCCGATGATGTCATCA
AGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAACATTTGCCAACTCCAATTCCTC
CCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGGGAGATTACACGGCAAATTCTCT
TTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCTAGTGCTGACCGACAGACTCGCA
TGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGGAATGCATCCGGGCGCTGGGACA
GAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCAGGTGCTGAGGGACTCCTTCATT
GGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCGGGGATAAGCTCCTGTGAATACA
CTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGAGCCCCCACAGCGGGCCCAGTGG
AGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAGCTCTCATGGGGCCTCTCTGACA
GGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTTAATGAAGCCATGACTCAGATCA
GGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCATACAGCAAGGACCAAGCTGGCT
TGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGAGACCTTCGTGAACAAGGCAGAA
TCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCAGCCCTTCAAGAAGTCATCAAGG
CCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAACAAATAAACAGCAAGAAACGGCA
CCAATGATGACTTCAAATAAAGATCTGTTTGGTATCACACTAGCCTCTTCCCCTCCCCAGAAAA
CTTCGGGCACCTCTGGCTTTGGTTAGGGCCTGAGTGGACAGGTTTTGGTAAATGTCAAGTACAG
GGCGTCAAGCCCTGGAAAGCTTGGGGAGAGGCCATGTTCTTTTCCTCAGTTTGGATCAGGAAGA
AGGAACTTTAATGACTGTGCTTCCTCTCCTCCCTGTCAGGAGTGCTGTTTGATAGTTTCCTGGT
ACAGCATCCAGCTGCTGGTAGAGAAGCTTCGAGATGCAGGCTCTGGCAGAGAAGCAGTGCTTGT
CCGGCTCCTGCTGCCTCTGGCTGCCAGCATCAATCACCTTTAGTCTGAGCGCTCTCGTGTTTTA
TACTTTCAGAAAAAAGGTTTTGAGACCTCTTTGTTTTTGTTTTTGAAGCCTAAGAAAATCTCTA
GTTCTTGCTTTTTATGTATTTATATGTTGCACCTAACAATAAAGAAAAAAAAAACATTTTGTGT
GATTATCAGAA

hide sequence

RefSeq Acc Id:

XM_006238633 ⟹ XP_006238695

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,831 - 130,659,257 (-)	NCBI
Rnor_6.0	5	136,028,409 - 136,050,002 (-)	NCBI
Rnor_5.0	5	139,820,990 - 139,846,611 (-)	NCBI

Sequence:

show sequence

GATCTGTTTGGTGTCTTGTGCTGAAGAGGGACTTGAAGCCCTTACTCATGCAAAGGAAATGCTG
CGGCCGAGCTACCTCCCTCAGCCCAATCTGCTGTTTCCAACCTGTGAGTTACGCTGGTGAAGTC
TGAGTAGTTCCTGAAGAGTTACAGGACTCTGGTGATGTAAACACAGAATTGTGACCTCATTGTG
GGTGTGAGCAGGAACTAGGAAAGGCATCAACTGGAAGATGTGACTGGGAAGAAGTCTCTGGGCC
CAGTAGAAAATCAAGAAGTGCTCAGGGGGCTGTGGCCAGCGGGACGTCACTGCCCAGCAGAGCA
GTAGGAGAGCCAACTGGCGTAGGTCTGCTGTGGACTTCTGTGTGCCTGCCTGTCTGCCTTCCTC
TCCACCTCAGTCTCCTCACTCAGTCTCCCTTGGCTTGGAAACTGGAAACCCATTCCATCTAGAT
GGTAAACCATTACTAAGGAATAACTATTTTGTAGTGGTCAGTGCTTTAATGGAACTTAAGATTG
ACATTGACGATGTGGCTGCCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGAAGGA
CAGTCTGCCACTGCAGGAGAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTCCAAA
ATTCCAGGTCCAAAAGAAGGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAAGTTC
GAATCCCTGCTCAGGAGAATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCAAGCC
ATTTCCCATTCACACAGGCCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTTGTTG
ATGATCAGCGAGGAGGCAGAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAACCCTG
GGAATTCAGTTCGGAGGAAATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGCGAGA
AGAGAAGAGGGCCCAGAACTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAGCTTT
CCAAACTGGGAATTTGCCCGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCTCTCA
CTGTGACAGACCCTATTGAAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGAATAA
ACAAGAACTGGCCAAGAAAGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCTGGTG
CATGAACCCAAGCTGAAAGTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTCGACT
TTGCCTTTGATGAAACTGCTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGGTACA
GACGATTTTTGAAGGGGGGAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAAGACA
CACACAATGGGTGGAGACCTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCAATGG
CTTCCCGGGATGTCTTCCTTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAGTTTA
TGTGACGTTCTTCGAGATCTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAAGTTA
CGTGTGCTGGAGGACAGCAAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTTACCT
GTGCCGATGATGTCATCAAGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAACATT
TGCCAACTCCAATTCCTCCCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGGGAGA
TTACACGGCAAATTCTCTTTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCTAGTG
CTGACCGACAGACTCGCATGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGGAATG
CATCCGGGCGCTGGGACAGAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCAGGTG
CTGAGGGACTCCTTCATTGGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCGGGGA
TAAGCTCCTGTGAATACACTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGAGCCC
CCACAGCGGGCCCAGTGGAGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAGCTCT
CATGGGGCCTCTCTGACAGGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTTAATG
AAGCCATGACTCAGATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCATACA
GCAAGGACCAAGCTGGCTTGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGAGACC
TTCGTGAACAAGGCAGAATCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCAGCCC
TTCAAGAAGTCATCAAGGCCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAACAAAT
AAACAGCAAGAAACGGCACCAATGATGACTTCAAATAAAGATCTGTTTGGTATCA

hide sequence

RefSeq Acc Id:

XM_017593141 ⟹ XP_017448630

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,831 - 130,659,227 (-)	NCBI
Rnor_6.0	5	136,028,409 - 136,050,002 (-)	NCBI

Sequence:

show sequence

GATCTGTTTGGTGTCTTGTGCTGAAGAGGGACTTGAAGCCCTTACTCATGCAAAGGAAATGCTG
CGGCCGAGCTACCTCCCTCAGCCCAATCTGCTGTTTCCAACCTGTGAGTTACGCTGGTGAAGTC
TGAGTAGTTCCTGAAGAGTTACAGGACTCTGGTGATGTAAACACAGAATTGTGACCTCATTGTG
GGTGTGAGCAGGAACTAGGAAAGGCATCAACTGGAAGATGTGACTGGGAAGAAGTCTCTGGGCC
CAGTAGAAAATCCAGCAAGAAGTGCTCAGGGGGCTGTGGCCAGCGGGACGTCACTGCCCAGCAG
AGCAGTAGGAGAGCCAACTGGCGTAGGTCTGCTGTGGACTTCTGTGTGCCTGCCTGTCTGCCTT
CCTCTCCACCTCAGTCTCCTCACTCAGTCTCCCTTGGCTTGGAAACTGGAAACCCATTCCATCT
AGATGGTAAACCATTACTAAGGAATAACTATTTTGTAGTGGTCAGTGCTTTAATGGAACTTAAG
ATTGACATTGACGATGTGGCTGCCATAAACCCAGAGCTTGTACAGCTTCTTCCCTTACGACCGA
AGGACAGTCTGCCACTGCAGGAGAACGTAACCATCCCAAAGCAAAAACGCAAGTCCGTCAACTC
CAAAATTCCAGGTCCAAAAGAAGGCCTTCGAAGTCGTTCCACTCGCATATCCACTGTCTCCGAA
GTTCGAATCCCTGCTCAGGAGAATGAAATGGAGGTGGAGCTGCCTGTGTCCACAAACTCTCGCA
AGCCATTTCCCATTCACACAGGCCACCCTAGGCCCTCCTGCTCCACAGTGACAGAATTACCGTT
GTTGATGATCAGCGAGGAGGCAGAAGAGCAAGCCCACTCCACCCGAAGCACCTCTTCTGCAAAC
CCTGGGAATTCAGTTCGGAGGAAATCATGTATTGTGAAGGAGATGGAGAAAATGAAGAACAAGC
GAGAAGAGAAGAGGGCCCAGAACTCGGAGATAAGAATAAAGCGAGCTCAGGAATATGACAACAG
CTTTCCAAACTGGGAATTTGCCCGGATGATTAAGGAGTTTCGGGTTACTATGGACTGTAATCCT
CTCACTGTGACAGACCCTATTGAAGAACACAGGATCTGTGTCTGTGTCAGGAAACGCCCACTGA
ATAAACAAGAACTGGCCAAGAAAGAAATCGATGTGATTTCTGTTCCCAGCAAGTGTCTCCTCCT
GGTGCATGAACCCAAGCTGAAAGTGGACTTAACGAAGTACCTGGAGAACCAGGCTTTTTGCTTC
GACTTTGCCTTTGATGAAACTGCTTCCAATGAGGTCGTCTACAGGTTCACAGCAAGGCCACTGG
TACAGACGATTTTTGAAGGGGGGAAAGCAACGTGCTTTGCCTATGGGCAGACAGGCAGTGGAAA
GACACACACAATGGGTGGAGACCTGTCTGGTAAAAGTCAGAATGCATCTAAAGGGATCTACGCA
ATGGCTTCCCGGGATGTCTTCCTTCTGAAGAATCAGCCTCGCTACCGGAGCTTAAACCTGGAAG
TTTATGTGACGTTCTTCGAGATCTACAATGGGAAGGTATTTGATCTGCTCAACAAGAAGGCCAA
GTTACGTGTGCTGGAGGACAGCAAGCAGCAGGTGCAGGTTGTGGGGCTGCAGGAGTACCTGGTT
ACCTGTGCCGATGATGTCATCAAGATGATCAACATGGGCAGCGCCTGCAGGACTTCGGGACAAA
CATTTGCCAACTCCAATTCCTCCCGCTCCCACGCCTGCTTCCAGATTCTTCTTCGAGCTAAAGG
GAGATTACACGGCAAATTCTCTTTGGTGGATCTGGCAGGGAATGAACGAGGAGCCGACACGTCT
AGTGCTGACCGACAGACTCGCATGGAGGGTGCAGAAATTAACAAGTCTCTCCTGGCTCTGAAGG
AATGCATCCGGGCGCTGGGACAGAACAAGGCTCATACCCCATTCCGTGAGAGCAAGCTGACTCA
GGTGCTGAGGGACTCCTTCATTGGGGAGAACTCGAGGACATGCATGATCGCCATGATCTCACCG
GGGATAAGCTCCTGTGAATACACTTTAAACACACTGAGATACGCAGACAGAGTCAAGGAGCTGA
GCCCCCACAGCGGGCCCAGTGGAGAACAGGCAGTCCAGATGGAGACAGAGGAGATGGACGCCAG
CTCTCATGGGGCCTCTCTGACAGGCAATGAAGAGGAGGAGCTGTCCTCCCAGATGTCCAGCTTT
AATGAAGCCATGACTCAGATCAGGGAGCTGGAAGAGAGGGCCATGGAAGAGCTCAGAGAGATCA
TACAGCAAGGACCAAGCTGGCTTGAGCTCTCTGAGATGACGGATCAGCCAGACTATGACTTGGA
GACCTTCGTGAACAAGGCAGAATCTGCCCTGACACAGCAGGCTAAGCAGGCTAAGCACTTCTCA
GCCCTTCAAGAAGTCATCAAGGCCCTACGCCTGGCCATGCAACTGGAAGAACAGGCTAGCAAAC
AAATAAACAGCAAGAAACGGCACCAATGATGACTTCAAATAAAGATCTGTTTGGTATCA

hide sequence

RefSeq Acc Id:

XM_039109239 ⟹ XP_038965167

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,637,831 - 130,659,213 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001078838	(Get FASTA)	NCBI Sequence Viewer
	NP_001292358	(Get FASTA)	NCBI Sequence Viewer
	NP_608302	(Get FASTA)	NCBI Sequence Viewer
	XP_006238694	(Get FASTA)	NCBI Sequence Viewer
	XP_006238695	(Get FASTA)	NCBI Sequence Viewer
	XP_017448630	(Get FASTA)	NCBI Sequence Viewer
	XP_038965167	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90223	(Get FASTA)	NCBI Sequence Viewer
	Q62909	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_608302 ⟸ NM_134472
- Peptide Label:	isoform 2
- UniProtKB:	F1M457 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIDIDDVAAINPELVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRISTVS EVRIPAQENEMEVELPVSTNSRKPFPIHSHPRPSCSTVTELPLLMISEEAEEQAHSTRSTSSAN PGNSVRRKSCIVKEMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTMDCNP LTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCF DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYA MASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQEYLV TCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERGADTS SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP GISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQMSSF NEAMTQIRELEERAMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQAKHFS ALQEVIKALRLAMQLEEQASKQINSKKRHQ hide sequence

RefSeq Acc Id:	NP_001078838 ⟸ NM_001085369
- Peptide Label:	isoform 1
- UniProtKB:	D3ZQG8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESLHARLFPGLSINIQRSNGLIHSANISTVNLEKSCVSVEWTEGGTTKGKEIDIDDVAAINPE LVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRISTVSEVRIPAQENEMEV ELPVSTNSRKPFPIHSHPRPSCSTVTELPLLMISEEAEEQAHSTRSTSSANPGNSVRRKSCIVK EMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTMDCNPLTVTDPIEEHRIC VCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVV YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQP RYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMG SACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEI NKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR YADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQMSSFNEAMTQIRELEER AMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQAKHFSALQEVIKALRLAM QLEEQASKQINSKKRHQ hide sequence

RefSeq Acc Id:

XP_006238694 ⟸ XM_006238632

- Peptide Label:

isoform X1

- Sequence:

show sequence

MESLHARLFPGLSINIQRSNGLIHSANISTVNLEKSCVSVEWTEGGTTKGKEIDIDDVAAINPE
LVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRISTVSEVRIPAQENEMEV
ELPVSTNSRKPFPIHTGHPRPSCSTVTELPLLMISEEAEEQAHSTRSTSSANPGNSVRRKSCIV
KEMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTMDCNPLTVTDPIEEHRI
CVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV
VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ
PRYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINM
GSACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAE
INKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTL
RYADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQMSSFNEAMTQIRELEE
RAMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQAKHFSALQEVIKALRLA
MQLEEQASKQINSKKRHQ

hide sequence

RefSeq Acc Id:

XP_006238695 ⟸ XM_006238633

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELKIDIDDVAAINPELVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRIS
TVSEVRIPAQENEMEVELPVSTNSRKPFPIHTGHPRPSCSTVTELPLLMISEEAEEQAHSTRST
SSANPGNSVRRKSCIVKEMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTM
DCNPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ
AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASK
GIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQ
EYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERG
ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA
MISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQ
MSSFNEAMTQIRELEERAMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQA
KHFSALQEVIKALRLAMQLEEQASKQINSKKRHQ

hide sequence

RefSeq Acc Id:

NP_001292358 ⟸ NM_001305429

- Peptide Label:

isoform 3

- Sequence:

show sequence

MIDIDDVAAINPELVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRISTVS
EVRIPAQENEMEVELPVSTNSRKPFPIHTGHPRPSCSTVTELPLLMISEEAEEQAHSTRSTSSA
NPGNSVRRKSCIVKEMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTMDCN
PLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFC
FDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY
AMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQEYL
VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERGADT
SSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMIS
PGISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQMSS
FNEAMTQIRELEERAMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQAKHF
SALQEVIKALRLAMQLEEQASKQINSKKRHQ

hide sequence

RefSeq Acc Id:

XP_017448630 ⟸ XM_017593141

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELKIDIDDVAAINPELVQLLPLRPKDSLPLQENVTIPKQKRKSVNSKIPGPKEGLRSRSTRIS
TVSEVRIPAQENEMEVELPVSTNSRKPFPIHTGHPRPSCSTVTELPLLMISEEAEEQAHSTRST
SSANPGNSVRRKSCIVKEMEKMKNKREEKRAQNSEIRIKRAQEYDNSFPNWEFARMIKEFRVTM
DCNPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ
AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASK
GIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQ
EYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRLHGKFSLVDLAGNERG
ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA
MISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEMDASSHGASLTGNEEEELSSQ
MSSFNEAMTQIRELEERAMEELREIIQQGPSWLELSEMTDQPDYDLETFVNKAESALTQQAKQA
KHFSALQEVIKALRLAMQLEEQASKQINSKKRHQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000073031 ⟸ ENSRNOT00000079371

RefSeq Acc Id:

ENSRNOP00000061433 ⟸ ENSRNOT00000068395

RefSeq Acc Id:

ENSRNOP00000025903 ⟸ ENSRNOT00000025903

RefSeq Acc Id:	XP_038965167 ⟸ XM_039109239
- Peptide Label:	isoform X2

Protein Domains

Kinesin motor

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693950

Promoter ID:

EPDNEW_R4475

Type:

initiation region

Name:

Kif2c_1

Description:

kinesin family member 2C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	136,053,227 - 136,053,287	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620239	AgrOrtholog
Ensembl Genes	ENSRNOG00000019100	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000025903	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000061433	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000073031	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025903	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000068395	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000079371	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.40.850.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Kinesin-like_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:171529	UniProtKB/TrEMBL
NCBI Gene	171529	ENTREZGENE
PANTHER	PTHR24115	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Kinesin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Kif2c	PhenoGen
PRINTS	KINESINHEAVY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KINESIN_MOTOR_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	KISc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K4G2_RAT	UniProtKB/TrEMBL
	D3ZQG8	ENTREZGENE, UniProtKB/TrEMBL
	F1M457	ENTREZGENE, UniProtKB/TrEMBL
	KIF2C_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Kif2c	kinesin family member 2C		kinesin-related protein 2	Name updated	1299863	APPROVED
2004-09-10	Kif2c	kinesin-related protein 2	KRP2		Symbol and Name updated	1299863	APPROVED
2002-08-07	KRP2	kinesin-related protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD