Ago3 (argonaute RISC catalytic component 3) - Rat Genome Database

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Gene: Ago3 (argonaute RISC catalytic component 3) Rattus norvegicus
Analyze
Symbol: Ago3
Name: argonaute RISC catalytic component 3
RGD ID: 1309163
Description: Predicted to enable RNA binding activity and endoribonuclease activity, cleaving miRNA-paired mRNA. Predicted to be involved in several processes, including RNA secondary structure unwinding; positive regulation of non-canonical NF-kappaB signal transduction; and regulation of gene expression. Predicted to be located in condensed nuclear chromosome; cytosol; and nucleoplasm. Predicted to be part of RISC complex and RISC-loading complex. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus. Orthologous to human AGO3 (argonaute RISC catalytic component 3); PARTICIPATES IN microRNA pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: argonaute 3, RISC catalytic component; Eif2c3; eukaryotic translation initiation factor 2C, 3; LOC313593; protein argonaute-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,913,957 - 143,998,746 (-)NCBIGRCr8
mRatBN7.25138,632,367 - 138,714,230 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,639,569 - 138,714,230 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,339,497 - 141,411,826 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,109,506 - 143,181,823 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,110,283 - 143,182,600 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,355,792 - 144,436,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,364,269 - 144,436,509 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,131,514 - 148,203,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,713,438 - 145,779,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,722,862 - 145,796,791 (-)NCBI
Celera5137,138,867 - 137,210,660 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Argonaute proteins at a glance. Ender C and Meister G, J Cell Sci. 2010 Jun 1;123(Pt 11):1819-23.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15260970   PMID:18771919   PMID:19536157   PMID:19946888   PMID:19966796   PMID:22658674   PMID:22681889   PMID:22795694   PMID:22863743   PMID:23064648   PMID:25931508   PMID:26764146  
PMID:29040713  


Genomics

Comparative Map Data
Ago3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,913,957 - 143,998,746 (-)NCBIGRCr8
mRatBN7.25138,632,367 - 138,714,230 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,639,569 - 138,714,230 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,339,497 - 141,411,826 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,109,506 - 143,181,823 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,110,283 - 143,182,600 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,355,792 - 144,436,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,364,269 - 144,436,509 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,131,514 - 148,203,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,713,438 - 145,779,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,722,862 - 145,796,791 (-)NCBI
Celera5137,138,867 - 137,210,660 (-)NCBICelera
Cytogenetic Map5q36NCBI
AGO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38135,930,718 - 36,072,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl135,930,718 - 36,072,500 (+)EnsemblGRCh38hg38GRCh38
GRCh37136,396,706 - 36,538,101 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,169,359 - 36,294,650 (+)NCBINCBI36Build 36hg18NCBI36
Celera134,671,200 - 34,796,478 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,513,684 - 34,638,740 (+)NCBIHuRef
CHM1_1136,513,064 - 36,638,399 (+)NCBICHM1_1
T2T-CHM13v2.0135,793,433 - 35,935,374 (+)NCBIT2T-CHM13v2.0
Ago3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,220,797 - 126,323,360 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,225,497 - 126,323,349 (-)EnsemblGRCm39 Ensembl
GRCm384126,326,994 - 126,431,670 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,331,704 - 126,429,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv374126,017,922 - 126,106,786 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,847,689 - 125,931,698 (-)NCBIMGSCv36mm8
Celera4124,677,462 - 124,766,345 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.39NCBI
Ago3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545213,977,481 - 14,094,259 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545213,977,487 - 14,108,729 (+)NCBIChiLan1.0ChiLan1.0
AGO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,774,637 - 190,916,632 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,897,430 - 190,038,609 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,196,371 - 35,322,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,371,926 - 36,497,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,372,221 - 36,497,190 (+)Ensemblpanpan1.1panPan2
AGO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,133,303 - 6,253,032 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,145,895 - 6,253,085 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,376,188 - 6,496,197 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,268,985 - 6,389,129 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,281,474 - 6,502,020 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,121,863 - 6,242,128 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,190,183 - 6,310,872 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,205,177 - 6,325,232 (-)NCBIUU_Cfam_GSD_1.0
LOC103225123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,784,226 - 96,923,183 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,801,900 - 96,923,148 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603319,802,930 - 19,942,329 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ago3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476418,948,484 - 19,052,523 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476418,948,469 - 19,078,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ago3
323 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:115
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000037178, ENSRNOT00000042371, ENSRNOT00000071137
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 11 8 8 3 6 8
Low 3 41 46 41 11 41 8 9 66 32 35 3 8
Below cutoff 2 2

Sequence


RefSeq Acc Id: ENSRNOT00000042371   ⟹   ENSRNOP00000050518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,641,987 - 138,714,230 (-)Ensembl
Rnor_6.0 Ensembl5144,364,269 - 144,436,509 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098520   ⟹   ENSRNOP00000096963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,685,905 - 138,714,196 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100398   ⟹   ENSRNOP00000086373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,641,987 - 138,714,230 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111949   ⟹   ENSRNOP00000083979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,641,987 - 138,702,498 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119040   ⟹   ENSRNOP00000084374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,639,569 - 138,714,230 (-)Ensembl
RefSeq Acc Id: NM_001271193   ⟹   NP_001258122
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,926,489 - 143,998,737 (-)NCBI
mRatBN7.25138,641,975 - 138,714,230 (-)NCBI
Rnor_6.05144,364,257 - 144,436,509 (-)NCBI
Rnor_5.05148,131,514 - 148,203,725 (-)NCBI
Celera5137,138,867 - 137,210,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764024   ⟹   XP_008762246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,913,957 - 143,970,712 (-)NCBI
mRatBN7.25138,632,367 - 138,682,796 (-)NCBI
Rnor_6.05144,355,792 - 144,403,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593400   ⟹   XP_017448889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,913,957 - 143,970,712 (-)NCBI
mRatBN7.25138,632,367 - 138,682,796 (-)NCBI
Rnor_6.05144,355,792 - 144,396,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110019   ⟹   XP_038965947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,913,957 - 143,974,854 (-)NCBI
mRatBN7.25138,632,367 - 138,690,354 (-)NCBI
RefSeq Acc Id: XM_039110020   ⟹   XP_038965948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,913,957 - 143,953,321 (-)NCBI
mRatBN7.25138,632,367 - 138,668,808 (-)NCBI
RefSeq Acc Id: XR_005504456
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,932,421 - 143,998,746 (-)NCBI
mRatBN7.25138,647,902 - 138,714,227 (-)NCBI
RefSeq Acc Id: NP_001258122   ⟸   NM_001271193
- UniProtKB: F1LUS2 (UniProtKB/TrEMBL),   A0A8I6A0C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762246   ⟸   XM_008764024
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448889   ⟸   XM_017593400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000050518   ⟸   ENSRNOT00000042371
RefSeq Acc Id: XP_038965947   ⟸   XM_039110019
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965948   ⟸   XM_039110020
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000083979   ⟸   ENSRNOT00000111949
RefSeq Acc Id: ENSRNOP00000084374   ⟸   ENSRNOT00000119040
RefSeq Acc Id: ENSRNOP00000096963   ⟸   ENSRNOT00000098520
RefSeq Acc Id: ENSRNOP00000086373   ⟸   ENSRNOT00000100398
Protein Domains
Argonaute linker   PAZ   Piwi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUS2-F1-model_v2 AlphaFold F1LUS2 1-860 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694036
Promoter ID:EPDNEW_R4561
Type:single initiation site
Name:Ago3_1
Description:argonaute 3, RISC catalytic component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05144,436,501 - 144,436,561EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309163 AgrOrtholog
BioCyc Gene G2FUF-39890 BioCyc
Ensembl Genes ENSRNOG00000034269 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042371 ENTREZGENE
  ENSRNOT00000042371.7 UniProtKB/TrEMBL
  ENSRNOT00000098520.1 UniProtKB/TrEMBL
  ENSRNOT00000100398.1 UniProtKB/TrEMBL
  ENSRNOT00000111949.1 UniProtKB/TrEMBL
  ENSRNOT00000119040.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro AGO3 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  Argonaute_Mid_dom UniProtKB/TrEMBL
  Argonaute_N UniProtKB/TrEMBL
  DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  Piwi_ago-like UniProtKB/TrEMBL
  RNaseH-like_dom UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
KEGG Report rno:313593 UniProtKB/TrEMBL
NCBI Gene 313593 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-3 UniProtKB/TrEMBL
Pfam ArgoL2 UniProtKB/TrEMBL
  ArgoMid UniProtKB/TrEMBL
  ArgoN UniProtKB/TrEMBL
  DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PhenoGen Ago3 PhenoGen
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000034269 RatGTEx
SMART DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP PAZ UniProtKB/TrEMBL
  RNaseH_fold UniProtKB/TrEMBL
UniProt A0A8I6A0C9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A154_RAT UniProtKB/TrEMBL
  A0A8I6A234_RAT UniProtKB/TrEMBL
  A0A8I6AS03_RAT UniProtKB/TrEMBL
  F1LUS2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Ago3  argonaute RISC catalytic component 3  Ago3  argonaute 3, RISC catalytic component  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-02 Ago3  argonaute 3, RISC catalytic component  Ago3  argonaute RISC catalytic component 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-02-22 Ago3  argonaute RISC catalytic component 3  Eif2c3  eukaryotic translation initiation factor 2C, 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Eif2c3  eukaryotic translation initiation factor 2C, 3   Eif2c3_predicted  eukaryotic translation initiation factor 2C, 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Eif2c3_predicted  eukaryotic translation initiation factor 2C, 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED