Ago3 (argonaute RISC catalytic component 3)

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Gene: Ago3 (argonaute RISC catalytic component 3) Rattus norvegicus

Analyze

Symbol:

Ago3

Name:

argonaute RISC catalytic component 3

RGD ID:

1309163

Description:

Predicted to have RNA binding activity and endoribonuclease activity, cleaving miRNA-paired mRNA. Predicted to be involved in several processes, including RNA metabolic process; gene silencing by miRNA; and positive regulation of NIK/NF-kappaB signaling. Predicted to localize to several cellular components, including RISC complex; RISC-loading complex; and nuclear lumen. Orthologous to human AGO3 (argonaute RISC catalytic component 3); PARTICIPATES IN microRNA pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

argonaute 3, RISC catalytic component; Eif2c3; eukaryotic translation initiation factor 2C, 3; LOC313593; protein argonaute-3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AGO3 (argonaute RISC catalytic component 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ago3 (argonaute RISC catalytic subunit 3)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ago3 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100968913 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AGO3 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AGO3 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LOC103225123 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ago3 (argonaute RISC catalytic component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	AGO3 (argonaute RISC catalytic component 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Ago3 (argonaute RISC catalytic subunit 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	ago3b (argonaute RISC catalytic component 3b)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	AGO1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	alg-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	alg-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	alg-3	Alliance	DIOPT (Ensembl Compara\|PANTHER\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	138,632,367 - 138,714,230 (-)	NCBI
Rnor_6.0 Ensembl	5	144,364,269 - 144,436,509 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	144,355,792 - 144,436,509 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	148,131,514 - 148,203,725 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	145,713,438 - 145,779,165 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	145,722,862 - 145,796,791 (-)	NCBI
Celera	5	137,138,867 - 137,210,660 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

cisplatin (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diclofenac (ISO)

emetine (ISO)

indometacin (ISO)

maneb (ISO)

methyl methanesulfonate (ISO)

paraquat (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

pyridaben (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

miRNA loading onto RISC involved in gene silencing by miRNA (ISO)

miRNA mediated inhibition of translation (ISO)

mRNA catabolic process (ISO)

mRNA cleavage involved in gene silencing by miRNA (ISO)

mRNA cleavage involved in gene silencing by siRNA (ISO)

positive regulation of gene expression (ISO)

positive regulation of NIK/NF-kappaB signaling (ISO)

pre-miRNA processing (ISO)

production of miRNAs involved in gene silencing by miRNA (ISO)

regulation of stem cell proliferation (ISO)

RNA phosphodiester bond hydrolysis, endonucleolytic (IEA)

RNA secondary structure unwinding (ISO)

Cellular Component

cellular_component (ND)

condensed nuclear chromosome (ISO)

cytoplasm (ISO)

cytoplasmic ribonucleoprotein granule (ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

P-body (IEA)

RISC complex (ISO)

RISC-loading complex (ISO)

Molecular Function

double-stranded RNA binding (ISO)

endoribonuclease activity (ISO)

endoribonuclease activity, cleaving miRNA-paired mRNA (ISO)

miRNA binding (ISO)

molecular_function (ND)

protein binding (ISO)

RNA binding (ISO)

single-stranded RNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

References

References - curated


1.	Ender C and Meister G, J Cell Sci. 2010 Jun 1;123(Pt 11):1819-23.
2.	RGD automated import pipeline for gene-chemical interactions
3.	RGD comprehensive gene curation

Additional References at PubMed

PMID:15260970	PMID:18771919	PMID:19536157	PMID:19946888	PMID:19966796	PMID:22658674	PMID:22681889	PMID:22795694	PMID:22863743	PMID:23064648	PMID:25931508	PMID:26764146
PMID:29040713

Genomics

Comparative Map Data

Ago3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	138,632,367 - 138,714,230 (-)	NCBI
Rnor_6.0 Ensembl	5	144,364,269 - 144,436,509 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	144,355,792 - 144,436,509 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	148,131,514 - 148,203,725 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	145,713,438 - 145,779,165 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	145,722,862 - 145,796,791 (-)	NCBI
Celera	5	137,138,867 - 137,210,660 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

AGO3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	35,930,718 - 36,072,500 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	35,925,683 - 36,072,500 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	36,396,706 - 36,538,101 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	36,169,359 - 36,294,650 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	1	34,671,200 - 34,796,478 (+)	NCBI
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	34,513,684 - 34,638,740 (+)	NCBI		HuRef
CHM1_1	1	36,513,064 - 36,638,399 (+)	NCBI		CHM1_1

Ago3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	126,220,797 - 126,323,360 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	126,225,497 - 126,323,349 (-)	Ensembl
GRCm38	4	126,326,994 - 126,431,670 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	126,331,704 - 126,429,556 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	126,017,922 - 126,106,786 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	125,847,689 - 125,931,698 (-)	NCBI			mm8
Celera	4	124,677,462 - 124,766,345 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI

Ago3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	13,977,481 - 14,094,259 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	13,977,487 - 14,108,729 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100968913
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	36,371,926 - 36,497,190 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	36,372,221 - 36,497,190 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	35,196,371 - 35,322,220 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

AGO3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	15	6,145,895 - 6,253,085 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	15	6,133,303 - 6,253,032 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

AGO3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	92,036,834 - 92,215,149 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	92,081,763 - 92,225,811 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	85,419,248 - 85,460,817 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103225123
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	96,784,226 - 96,923,183 (-)	NCBI
ChlSab1.1 Ensembl	20	96,801,900 - 96,923,148 (-)	Ensembl

Ago3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	18,948,469 - 19,078,247 (+)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	71552569	157225114	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	84963058	173504662	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	97921932	149030144	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	100723739	153577831	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	102945579	154732228	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	107119214	152119214	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111278451	156278451	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112279412	157279412	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112279412	157279412	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112279412	157279412	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112279412	157279412	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112279412	157279412	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114140832	159140832	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114140832	159140832	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116767924	161767924	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116767924	161767924	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116767924	161767924	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116767924	161767924	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125455818	149568944	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125455818	157225114	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	128687766	173687766	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130531300	145726262	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	131077716	173707219	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132551937	173707219	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133943857	173707219	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133943857	173707219	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	134197905	173707219	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134502121	149030144	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134502140	157212422	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	134712342	173707219	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	134712342	173707219	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	136354114	173707219	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136640731	173707219	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138154677	172402610	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	142307322	173707219	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	142309061	173707219	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	187
Count of miRNA genes:	115
Interacting mature miRNAs:	118
Transcripts:	ENSRNOT00000037178, ENSRNOT00000042371, ENSRNOT00000071137
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			11		8				8	3	6	8
Low	3	41	46	41	11	41	8	9	66	32	35	3	8
Below cutoff		2						2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042371 ⟹ ENSRNOP00000050518

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	144,364,269 - 144,436,509 (-)	Ensembl

RefSeq Acc Id:

NM_001271193 ⟹ NP_001258122

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,641,975 - 138,714,230 (-)	NCBI
Rnor_6.0	5	144,364,257 - 144,436,509 (-)	NCBI
Rnor_5.0	5	148,131,514 - 148,203,725 (-)	NCBI
Celera	5	137,138,867 - 137,210,660 (-)	NCBI

Sequence:

show sequence

GACCCGGGAGAGCGAAAAGCGGCGGCGGCGGGGCGGCTGGAGGGTCCCGGAGGTGCGCGCGTCA
GCAGCTGTAGGCGACGCAAGTTCCGGACCCGGCTTCAGCGTCCTCACCTCAGGACTGTCGCCGC
TCTTACCTTGCTGCTGACTGTCTCCGGACAGTGCCTCTTCTGCCTGGAGCTTTCAGAGGGCGTC
CGCTCCTCACCTCTGTGGTGGCACCTTTCTCTTGTGAAGCACTCCCCACAGCTCCATGAATGGA
AATCGGCTCCGCAGGACCCATTGGGGCCCAGCCCCTACTCATAGTGCCCAGAAGACCTGGGTAT
GGCACTATGGGCAAACCCATTAAACTGTTGGCTAACTGTTTTCAAGTTGAAATCCCAAAGATCG
ATGTCTACCTCTATGAGGTCGACATCAAACCCGACAAGTGTCCTCGAAGAGTGAACAGAGAAGT
AGTTGACTCAATGGTTCAGCATTTTAAAGTGACTATATTTGGAGACCGTAGACCAGTTTATGAT
GGAAAAAGAAGCCTTTACACAGCCAATCCACTTCCTGTGGCAACTACTGGGGTAGATTTAGATG
TTACTTTACCTGGGGAAGGTGGAAAAGATCGCCCTTTCAAGGTGTCAGTGAAGTTTGTGTCCAG
AGTCAGTTGGCACCTACTACATGAAGTTCTGACTGGTCGGACTTTGCCTGAGCCACTGGAATTA
GACAAGCCAATCAGCACTAACCCGGTCCATGCCGTTGATGTGGTGCTCCGACATCTGCCCTCTA
TGAAATATACGCCTGTGGGGCGCTCCTTTTTCTCAGCTCCAGAAGGATACGACCACCCTCTTGG
AGGGGGCAGGGAAGTATGGTTTGGATTCCATCAATCTGTTCGGCCTGCCATGTGGAAAATGATG
CTCAATATTGATGTTTCTGCCACTGCCTTTTACAAAGCACAGCCTGTCATTCAGTTCATGTGTG
AAGTTCTTGACATTCACAACATCGATGAGCAACCCAGACCCCTGACCGATTCTCATCGGGTAAA
ATTCACTAAGGAGATAAAAGGTCTGAAGGTTGAAGTGACTCATTGTGGAACAATGAGACGGAAA
TACCGTGTCTGTAATGTAACAAGAAGGCCTGCCAGCCACCAAACATTTCCTTTACAGCTAGAAA
ATGGCCAAACTGTGGAGAGAACTGTAGCTCAGTATTTCCGAGAAAAGTACACACTTCAGCTGAA
GTACCCACACCTTCCCTGTCTGCAAGTGGGGCAGGAGCAGAAGCATACATACCTGCCACTAGAA
GTCTGTAATATTGTGGCTGGACAGAGGTGTATCAAGAAACTAACAGACAATCAGACTTCTACTA
TGATTAAGGCAACAGCAAGATCTGCACCAGATAGACAAGAGGAAATTAGCAGATTGGTAAGAAG
TGCAAATTATGAAACAGATCCATTTGTTCAGGAGTTTCAGTTTAAAGTGCGGGATGAGATGGCC
CATGTGACCGGTCGAGTACTGCCAGCACCTATGCTCCAGTATGGAGGACGGAACCGGACAGTAG
CAACACCAAGCCACGGAGTATGGGACATGAGAGGAAAACAGTTCCACACAGGAGTTGAAATCAA
AATGTGGGCTATCGCTTGCTTTGCCACACAGAGGCAGTGCAGAGAAGAAATACTGAAAGGATTC
ACAGACCAGCTTCGGAAGATCTCCAAGGATGCAGGGATGCCCATCCAGGGTCAGCCATGTTTCT
GCAAATACGCACAGGGGGCAGACAGCGTGGAGCCCATGTTCCGGCATCTCAAGAATACCTACTC
AGGACTGCAGCTCATTATCGTCATCCTGCCTGGGAAGACGCCGGTATATGCGGAGGTGAAGCGT
GTAGGAGACACACTTTTGGGTATGGCCACACAGTGTGTGCAAGTCAAGAATGTAATAAAAACAT
CTCCTCAAACTCTTTCAAACTTGTGCCTAAAGATCAATGTTAAACTTGGAGGAATCAATAATAT
TCTTGTACCTCATCAAAGACCTTCTGTGTTCCAGCAACCAGTGATCTTCCTGGGCGCAGATGTC
ACACACCCGCCTGCTGGTGACGGGAAGAAGCCTTCCATTGCTGCTGTTGTAGGCAGTATGGATG
CCCATCCAAGCAGATACTGTGCCACAGTGAGAGTTCAGAGACCCCGACAGGAAATCATCCAGGA
CTTGGCCTCCATGGTCCGGGAACTGCTCATCCAATTTTACAAGTCAACCCGATTCAAACCTACT
CGGATCATCTTTTATCGGGATGGTGTTTCCGAAGGACAGTTTAGACAGGTATTATATTATGAGC
TCCTGGCAATTCGAGAAGCCTGTATCAGTTTGGAAAAAGACTATCAACCTGGAATAACCTACAT
TGTCGTTCAGAAGAGACATCATACGCGATTGTTCTGTGCTGATAGAACAGAAAGGGTGGGAAGA
AGCGGCAACATCCCAGCTGGAACCACAGTGGATACAGACATCACTCACCCGTATGAATTCGACT
TTTATCTCTGCAGCCATGCTGGAATACAGGGAACCAGCCGTCCTTCTCACTATCACGTTCTGTG
GGATGACAACTGCTTCACTGCGGATGAACTGCAGCTGCTGACCTACCAGCTCTGCCACACCTAC
GTGCGCTGTACCAGGTCCGTGTCGATCCCTGCACCAGCGTACTATGCTCACCTGGTGGCGTTCA
GAGCCAGGTACCATCTGGTGGACAAGGAGCATGACAGTGCTGAAGGAAGCCATGTGTCAGGACA
GAGCAATGGACGAGATCCACAAGCTCTTGCCAAGGCTGTCCAGATTCACCAAGATACCTTACGC
ACAATGTACTTCGCTTAGCAAGTCCAAGTGATCTCCGAGAGGAAGAGCTGGAGCTCGTATGTTT
CCAGTGGACTCAGTTCACTGGGGAGGCCTCCAGCCGCACAGAAGCCAATACTATGTAGGGGTCT
GGACCTTACGTTGATCCGAGGAAAAATGTTTACTCTGTCAAAGAACACAGCACTGTTGTATACC
AGGGAGCCAGCCCGCTGCTTTTTTGCAGTGTCCTGTAGAAGAAGCATCACGGTTGTTCGTTCTC
ACTTCTTACAGTCTAACCCCATTAATACCTTTACCTCAAGTTGCTTAGCGGCACAACCGTCTCT
GCAAAAAAAGTAAA

hide sequence

RefSeq Acc Id:

XM_008764024 ⟹ XP_008762246

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,632,367 - 138,682,796 (-)	NCBI
Rnor_6.0	5	144,355,792 - 144,403,623 (-)	NCBI

Sequence:

show sequence

AAAAATAAAAAAATAAAATAAATAAATTTTCACCGATTTCGTCATATGCTTTGCCATTTTTCAG
GTATGATGCACCGCTTTGCTTCTTGTATTTTTTGTGTGAAGGCAGAGTCTCACTGTATAGTATG
GCTCAAGTTGGTTTCAAACTTTCCATCCTCCTGCCTCCACCTTTCAGGTGTCAAGTGCCAGGAT
TATAAGATGTGCCTCTTCTGTTTTTATGTACTGTCTCTGTGTGGATGCTTACTTTCTGTCTGTA
GCTTAACTTTGAATGAGATGTATTCTCTGAAGCTCCTGGTAGAAGACGGTAGGAGGGTCATTAG
TTGTACTTTAGTAGCAAGATAATTTCCTGGCTTTCTCTGCTTGAGGACTCCATCCAGAAGAGTG
GGTAGCCTCACCCCGTCTCCCCTGCTTTCCAGTACTTTCAGTGATGTAAGTGCTGACTCCATTG
GGGGTGCCTCTGCTTTGCCATTAGTTTATAGCTTTCCTGCACAGTTCAGATTAAGAAATTACAG
AGCAATCATAACTGGATCATTTGTAGAAAGGTAGTCTTTCTGGGACTATCTAAGCTACTCTCGA
TATACCCTGATGACATGTTTATACATCCTTTCTCTTTTTCTATCTGAGAGTCCCCTACTCCATT
TCAGTTCCAGACGTGACTTTTAAGATAGGACACTTCCTTTTTGAAAGTGAAATGTGATGTTTCC
CCATAGATTTCCTTATACTTATTGACATTCTCCAGCGTTCAGATATGAGTTCTTGTATAGATTT
TGCAAGCCTGAATAATCAGGGCCATATTTACTTACAATGTGGCATTTTCTGGGGGGTGGGGGGG
AGGTTAATTGCTCAATCTTAGTACTTTTCTTGTTGATATGTATAGTATCTTGGAAAAAGATGAA
GAAATTGGGACTAAATTGCTGTTTTGTTTCTACCAAAACTTAAAAGGTTAGCTTTCAAAATTAA
TAAAGGATTTCTAAATAACCCATTGGTCAAAGAAGTCACAAAGGAAATTTGAATTTTGAACAAA
ACGGTAGTTAATAATATATATCAAAACGGGTATGATTGATTTAAGCAATGCTTAGAAAAATTTA
AAACTTTAATGACCCACTAGAACAGAAGAGAAGCATCAGTAACCTGAGCATTTATCTAAAACTG
TTAGAAAATTAAACGCAAAGAGACTAGAAGGAAATAAGAAATAAAAACAGGAGATAATGAACTA
AAACGGAAATTTAGTCAGTAGGGAGGCATCACGGGTTCTTAAGAAAGGTAGTGACATGATCGTG
TTTGTTTTCCAGAAAGAGACCTCTGGCAGCAGTTTGGAGAATAGATAGAGGAAAAAGGCTAATC
TGAGAAGCCAGTAAGGGCTTCTCAATCACTAGTTCAGTTTCTGCCACTGCCTTTTACAAAGCAC
AGCCTGTCATTCAGTTCATGTGTGAAGTTCTTGACATTCACAACATCGATGAGCAACCCAGACC
CCTGACCGATTCTCATCGGGTAAAATTCACTAAGGAGATAAAAGGTCTGAAGGTTGAAGTGACT
CATTGTGGAACAATGAGACGGAAATACCGTGTCTGTAATGTAACAAGAAGGCCTGCCAGCCACC
AAACATTTCCTTTACAGCTAGAAAATGGCCAAACTGTGGAGAGAACTGTAGCTCAGTATTTCCG
AGAAAAGTACACACTTCAGCTGAAGTACCCACACCTTCCCTGTCTGCAAGTGGGGCAGGAGCAG
AAGCATACATACCTGCCACTAGAAGTCTGTAATATTGTGGCTGGACAGAGGTGTATCAAGAAAC
TAACAGACAATCAGACTTCTACTATGATTAAGGCAACAGCAAGATCTGCACCAGATAGACAAGA
GGAAATTAGCAGATTGGTAAGAAGTGCAAATTATGAAACAGATCCATTTGTTCAGGAGTTTCAG
TTTAAAGTGCGGGATGAGATGGCCCATGTGACCGGTCGAGTACTGCCAGCACCTATGCTCCAGT
ATGGAGGACGGAACCGGACAGTAGCAACACCAAGCCACGGAGTATGGGACATGAGAGGAAAACA
GTTCCACACAGGAGTTGAAATCAAAATGTGGGCTATCGCTTGCTTTGCCACACAGAGGCAGTGC
AGAGAAGAAATACTGAAAGGATTCACAGACCAGCTTCGGAAGATCTCCAAGGATGCAGGGATGC
CCATCCAGGGTCAGCCATGTTTCTGCAAATACGCACAGGGGGCAGACAGCGTGGAGCCCATGTT
CCGGCATCTCAAGAATACCTACTCAGGACTGCAGCTCATTATCGTCATCCTGCCTGGGAAGACG
CCGGTATATGCGGAGGTGAAGCGTGTAGGAGACACACTTTTGGGTATGGCCACACAGTGTGTGC
AAGTCAAGAATGTAATAAAAACATCTCCTCAAACTCTTTCAAACTTGTGCCTAAAGATCAATGT
TAAACTTGGAGGAATCAATAATATTCTTGTACCTCATCAAAGACCTTCTGTGTTCCAGCAACCA
GTGATCTTCCTGGGCGCAGATGTCACACACCCGCCTGCTGGTGACGGGAAGAAGCCTTCCATTG
CTGCTGTTGTAGGCAGTATGGATGCCCATCCAAGCAGATACTGTGCCACAGTGAGAGTTCAGAG
ACCCCGACAGGAAATCATCCAGGACTTGGCCTCCATGGTCCGGGAACTGCTCATCCAATTTTAC
AAGTCAACCCGATTCAAACCTACTCGGATCATCTTTTATCGGGATGGTGTTTCCGAAGGACAGT
TTAGACAGGTATTATATTATGAGCTCCTGGCAATTCGAGAAGCCTGTATCAGTTTGGAAAAAGA
CTATCAACCTGGAATAACCTACATTGTCGTTCAGAAGAGACATCATACGCGATTGTTCTGTGCT
GATAGAACAGAAAGGGTGGGAAGAAGCGGCAACATCCCAGCTGGAACCACAGTGGATACAGACA
TCACTCACCCGTATGAATTCGACTTTTATCTCTGCAGCCATGCTGGAATACAGGGAACCAGCCG
TCCTTCTCACTATCACGTTCTGTGGGATGACAACTGCTTCACTGCGGATGAACTGCAGCTGCTG
ACCTACCAGCTCTGCCACACCTACGTGCGCTGTACCAGGTCCGTGTCGATCCCTGCACCAGCGT
ACTATGCTCACCTGGTGGCGTTCAGAGCCAGGTACCATCTGGTGGACAAGGAGCATGACAGTGC
TGAAGGAAGCCATGTGTCAGGACAGAGCAATGGACGAGATCCACAAGCTCTTGCCAAGGCTGTC
CAGATTCACCAAGATACCTTACGCACAATGTACTTCGCTTAGCAAGTCCAAGTGATCTCCGAGA
GGAAGAGCTGGAGCTCGTATGTTTCCAGTGGACTCAGTTCACTGGGGAGGCCTCCAGCCGCACA
GAAGCCAATACTATGTAGGGGTCTGGACCTTACGTTGATCCGAGGAAAAATGTTTACTCTGTCA
AAGAACACAGCACTGTTGTATACCAGGGAGCCAGCCCGCTGCTTTTTTGCAGTGTCCTGTAGAA
GAAGCATCACGGTTGTTCGTTCTCACTTCTTACAGTCTAACCCCATTAATACCTTTACCTCAAG
TTGCTTAGCGGCACAACCGTCTCTGCAAAAAAAGTAAAGAAAAAGTAAATGATGGTTTAAAAAC
ACACACTTACACAAATAATGATTGCTCACTTACATGCAAAAAAAAGCAATGTGCATCTATTCTT
GTAAAGGAGTGTGTATTTTCATCACCCACACGTTACTTCATGTGCGTATGTATCTAGATCACGG
ATATGTACCTGTGTGTGTTCTATCATTCATTCCCCTGGGGAACTGTCTTTCCTTGTGTCCTTCA
GCATCTGTTCTTTTGTCCCTGTAGCTACAAATGACATTCGTATGTTCATGCATATGGCTCGTTT
GAAGGAAGGCTTGGCAAACTAGACCTCTGGTTTTATGTACCCTCCTCCTAGCTCCTGTCTCACA
CCCAGGAGTCCTCCACTCCCGACACCATGTTTGTGAGCGTCTGCTCCTTCCTGCTCTGGACTTA
GCCCCATGCGCACTGTGTTCAGCATAGTGGTGACCCAGGGTTCTTCCTGTAGTGAGTTTGTAAA
GCCACTGCACATACGAAATCTTGTCAGACCTTTCTGACCAGAGCAAATGTTCCAAAGCCTTCTG
TTGTATGAGTTATACCTGGAAATCCCTTCAAGCTTTTATAAAGGGAAAGATTTTAGAAATCTGA
AACTCTGTAGGATGGAAAAAGGAAGGAATTGGGGTTGTTTTTGTTTTGTTTTTGCTAGTTTACT
TACTGCCCTCAAACCTTAATGTGATTTCATTCATATATATATGTATGTATGTATGTATACACAT
AATATATGTTGAAGTATAGCTCCCTTTGCCTTTATATTCATTAGAATAGTGCTTTAATAATTAT
AAACTGTATTGGCTACACTTTTTATAGAACTAGAATCATATTTAAGAACTGAGACAGTTTTTGC
TCTCTTTTAGTGCAATAAGCAGTTTTACAGGAAAGTCGTGTCTGTCGTCCTCACCATGGCTAGC
AGGAAGAACAGACATCTGTCATTTAAAGGGGGCAAAGTAATACAGCCTTAATTTCAGAAGGAGA
GTTTCCTTAGTTTCATAAATTCAGTTTTAAAGCAATTCCTTAAAACAGTTGTAGCCAAAGGAGT
TAAACCCATTAAAGGAGCCTCAGATAAGAGATCAGAGACGTAGTTGAACCTCCGTGTTTAAAAA
TAACAGTGAACAGCTTAAGATTTAAATATTTTTAAATTATCTGAAAATATATCTTACTTGTTGA
ACTGTGCTTCTTTGACTAAAAGGAGTCAAATACTGGATGGTTTTTTTCTATCTTTTTACCAGTG
TAACTTTCTCTTTAAAAGTAAGATGGCAATGATGAAGGAAATTAATACTTTGATCATTTAAAAT
TAGTAAATTTCTAAAATACAGTGAAAACTCTTTAAAAACTTAGTTTTCTTCACTTCTTTAATCA
GTAACTTTAGTCACTAACTTTAAGCTATCAAAGCTTAGTTTCTCCGTAACGTCAGGTTCGGGAA
CTCTGCAGTTTGTAACTCATGACAATTGTGTGTGAATCTTCTCTGTTCTTGTCCCCACACCGGC
TCTGCGGACAAGCACTACAGATGTTTGTGGTGGGCGCTGTCAGCCTCTCAGAACTCCATCTGCC
ATGAGCAGGCACGTATTTAGGTCTTCGTTTGCTCTCTTACTGTTAGTCCACGTTTATGCCAATT
TACTGTATTTTGAATCTAAAATCTGAGCCCATGTCCTACAGGCATGAATTCTTCTGTCCCTTTG
CCAGAACACTAAAGAAAGTACTGTATTTTATATGTTCGTTGCTTTGAAGTAACTAAAATGCAAT
TCTCAATACTGTTTCAAAGCACTTTACAAAGGATATTTATGTACTTTATACAGTTTTTTTCCTT
CCAAAATATTCCCATCTCAACCCTAGCAAAAGAAATCTCCTTCTAACATATTTCGGGTTGGTTT
GTTTGCTTGTTTGCTTTGGAGACAAAGTCTCTCTCTATTGTCCATGCTGGCCCCCAACCCTGGG
CTCCAGAAGTATTCTCAACCTCCCTGGTAGTTAGGACCACTGCGCTCCTATCATCATGCCTGGC
TGTTGGGGAACATGGCCAAGAGAATAGAATGGGATAGCCTCCCTATCAAAAGTCTGACTGGATT
GTGTTTGCTTAGTATAACTAGAACACCTTCTTTGGCCCCTGCACATGTTCACGTGAGGAGCTTT
GGGGAGTGGCATGGGCACCCTGTTCCTTTCCTGACCTTTGATCTCACACATGCCAGAGTGAAAC
CCTTACTTTAGCTCTTATTTGAAAGGATTTTTTTAAAGAAGAATTTTTTTTTCTAAAATAAGGT
TCTATCTTTTAAATGGCTCCTTTTTTAGAATGCATTTACATTATTGTCTTGCTAGTTTAAGATA
ATTAACTATACATAAAGACTATGTATAGTGTGTTTCTATTTTGCCTACTAATAAATTGGTATAC
CAAGCAATGCCAACAAAGTTTGTGCTTAGGATTTTAAGATAAAAAGGCCTATAGAAATACTTCT
TGAAATTTATACTATTTTTCCATTTCTGGGTAGAACTCCTAATCTCTTTCCTAAGTTCCTTTCA
GTTTAAACATCATGAAGCCATAGTAATGTTTCTCTTCTGCCGCATTCTTGCTCCCAGCTGATGG
ATGTTGTCGGGGTTTGTTTTCTTTGTTTGTTTGTTTTTTTATAAAAGGCATGGCTTAGAAGAGT
GACTGAAACGTCAATCTGAGCAACTTGTAGAAATTGATTCTCATGTGAAGAGTTGCGAGTTTAG
TGTATATTCTTGATGGCAAATGTGTGTGTAGAGTGTGCGTGTTACATGTCTGTATTCCGGTATC
TAAGCCCTGGCACTGAGACCGTATATTAATAATTCTGTGGCTGCTATATTTATTAATGCAGGTC
TGACATTTACTGCACTAAACAGTAAGGAGATAAGCAAGATGCCAGGCTAGTGTCAGACACTTTT
TGTTTCTCAGATAAGTCTAGGGACATAAAATATGAAGGTAACAAATAACAAGTACTTGAAACGG
TGCTGATTCCAGTTCAGTGACAGAACGCCTTTGCTTTAGAAACGTAGTTTTCTTTTACATTGAT
AGTCCACGTGAGGGCACTAAAGTCTTCTCGGTTCTGGGTTCTGGCACATTTCCACAGAAATATG
GAAACCTTTTGTTTTATTAATAATTATTTTTTAACACGTTTTCCAGGAAAAATAGTCTGGAAAT
ACATAGTAAATGACCTATTAGTTTATTTTTGTTCCTAAAGAGAATCTAGAAGGGACCCCAGTAA
GAACGTTCTGTGTGTTTGGGAAGGCATTTGGTTGAAGACACTCCTCACCTTCAAAAAACCCAAG
GACTTGTCCAAGCCAGGCCCTCTCTGGTTCCCATAGCCCAGTAGTGACTTTCACAGTATCTTGT
GGAACTTAGGGTGGCGAGCTTGATGTGTGTCTTGGAATAAGAAACCAGCTGCTCTTGAGTAAGA
ATAGCTTCCAGATCTCAGTAACAGGCAGCGTGAGCACTTGGAGAGCAGCCATAGAAGCGAAGCC
CAGGGAGATGAATATCATAACACGTGGTGGGGCTTTTCACTTGCTTAATTCTCAAGAAAATCAA
GGGCCTCGACACTTTGGGCATTGGGAGAATAGTTCCCTTTCTCTTTCAAACCTTCATAGTAATG
TTTCTCCAAGAGGTTTAACTGACCTCTCTGCATAATTTTCACTGGCTGTCATTAAACTGAGTTC
TATGTTCAATTAAGCTGAGTATAAGGTGCAACCCCAACCCTCAGGAGCATCAGGAATTCAAAGC
CAGCCTCAGCAACAGGAGGCCATGGCTAAAACACAGACGTCCTGTGTTCCTCCTCCCTAGGCAC
TCAGCGGTTCCGTGTAGCTTACCCGTCCCTTTCAAGTTGTGTGGGTTCCTCAAAGACGGACAGG
ATACATAGGAATACTGTGTCCCCAACTGCCAAACCCCCTGCTCCCAAAAAAAAGAAAAACACCA
GACAAATCAGAAAGAGAATCGTCTCCAAAACATATTGGCAACATTGAATGTGATGCTGTGATTA
ATTAGACCCAGGCGATAGCGATTAGATAGCGATAAATAAAATACATCGCGAGAGAAAAAGGATT
ATAATAACAGCACATTTTATGTTTCTAATTCTCCCTGTAAGTCTGCAACTTTAAAATGAATAAA
GGCTTCTGTTGATATTATCCATGGCCAGATGAAATTTACCTCACCCCTCCAAAGGAGTGCCTAG
AGTTTTCTTCAGAATCTTTTGTTCTCAAAGCACAGAAGTTAACGACATTAGCTTGAATAAAAGG
ATGGTGAACCTCAGTGTGGTGGGTTCAATTCCCGGTAGAAGACCATGTTAAAGTTATAGGTAGC
GAACTGATGACAAATTAGGATCTTCTCGAGTCACCCAGCCAGCCAGTGGGCCCCCTTCCTTGTT
TGAAATCTATGTCTAAGGTCACCAGAATCTGCTACTGTTTTCCATTAGAGTCTCAGTAAAGAGG
TTTTCCAGGTAGACACTGGGTTTTAAGTCGTTTTTTAAAGCAAAGTGGTTCTTAGAAAGTGCCT
TTTCTGAAGATGGTGCTGTAGATTTTTACTTTTCAAACAACGTAAAGCTAAAAATTTTTATGAT
AATTTAGAATACCAAGAGTATGCCAGTTTCATATAAATAGTGTCGTTTGTCCTGAATTTGGTCA
GGAGAACCAAGGGACTTGTGTGTAGTAACATGTCTCTCAGTTAATGCTCACCAAATCGATTTTG
TAAATTTGAAAATATAATTTTTAATTCTCAGTTATGTTTAAAGTGTTTATAATATACATAAGAT
AGGAGATATAGTAGTAAGCACCCCGTGGCAAAGGTACCATGGCAGGAACTGTATTATGAGGAGC
TTTTCCGTTTTCAGCACGTTACCTCCTGACCTAACCTTTCCTTCTGACTCAACGTTAAGGACAG
TACATACAAGGGAAGAGCTGCGTCACTGAGACCAGTTCAAGAGAGCAAGCAACATGAGAGCTCA
GTCCTTAGGGAACTGTTGGGTTTTAGACAGTAATGACTATTTTACATGATTCCTGCTTTTTTAG
GTCAGAAGGACTGTAGAAAATGACAGGAAGAGGGCATGGTCAATTATTTTTCAATAGATCATAG
TCTGAGGATATATAACTACTCACTGGAAGGGTACTTAGCGAATACAAAGCCCCGATTTCGCCCC
TAGCCCTAGGGAGGAAAACGTGTAAATGTGGGCTGTGAGAATAAGCAAAGTGAGACCATTTAAG
CCCACTAGGAACTCAGTCATCTGTTGGGAAGCTAGCAGCCTTTTCTTACAACTAAATGGTCAAT
TAACCAATTCCTCTTGTGAATTTAGTGACCATTCCTCCAGACAATAACTATGCTAAAAACACAC
AGAAACCACCACCCCTCAGTAACCTTGTCTGCAGCGTAATGTAAGAATGTCAGTAAAATTACAC
TGGTTATCTGGGGTGAGCTGTGTCTGTTCGCACATTAAACTTTTTCATTTTTATAAGGTCTTAA
TAGAAATTATTAGCTTATTTTTAAGATTAATTTTTCTATAGTGATGTTCATATTTATTGGCAAT
TCGTGTGCAACTTTTGCATTTTGCCCAGATGTTAGATTTAAGGTATTTTATTTTTATAAATATA
TCTAGCTTTTCTCTTTCTTTGTGATATTAGCAGAAATTGAGATAGTGTTAATATATCAGCCAAA
CTACTAATTCTATAGAGTTTGGATTTTTACCAATAAACCGTTAACCCGATTTTCTACTTTAGAA
TATTTAGTACTTTATATAATGGGCATTAAAGACAGTCCCTAGGTGGGTTTCTACATGTGGATAG
GAGGGAGGGCCTCTGTAAGCTAGGTTCATTTTCCTCCTCCATTTGATAGCAAACAAACATTAAC
AAATTGGCTTTATTTTACCTGATTCCATCTTGGAGGATGTTGTCAAATAAATGATCTTTGGTTT
CTTTTGTTAGCTTGAGGCACATTGCTCAAGATTGTGATTCATGGGGTTGGGGATTTAGCTCAGT
GGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCAAGCTCCAAAAAAAAAAAA
AAAAAAAAAAGATTGTGATTCATTTTTATAGTCGGGAAGACAAATAGAAAAGGATATACAAGTT
ATTGATAATTGATTCCCAAGTGAGATTTTCCTTCCATAATTATTTGGAAGATTTGCTACCCTGA
ACTCCCCTAGAAGAGTTTCAAAGTTGGTTCAACCCTGAGTATTGGTGAAGAAAAAAGAGTGTAG
GTGTCTGGGAAGAACAAAGACAGAATGATAAAAGCATTTCATCTGATTAAAATTGACCTCAGAA
GGCCCGAAGTGCATGGCTTTAATAGCAGTACTCAAGCAGAGGCAGGCTGACCTCTGCAAATTCC
AGGCCAGCCTCGGCTACTTAGTGAGGTCCAGGTCATCCAGGGCCTCATAGTGAGAGCTTATCAC
CAAGTATACAAAAGTTAAGTAGTAACATGAACTAATTGAAAAGCAATAAAAGTGTGATTATAGA
ATATTAATTTCAAGGATATAAAATCACTGAAGTTTTTTTAGTAGTTCAATCTCCCTTTATATTG
GCACATTAATTCCTTTAAGTATATGAAAAAGATATATTATTCCCTAAAGAAGATAAAATCTGTC
CATTATATTTCTACACTCCTACTTTGCTTGCTAAGGAATTCTTCTTTCCTGTGAGAAATGAAAA
GAGAAACTCTATCCTTTCTTGAATTTTTAAATGTCAAATCGTTGGGGCTCCATGCACTTCACTT
CCCTCGCTGTACTCCTTTCTCCACTGAGAGGGGGGAATTGGGAAGGTTTTAGGGACTTGCAAAC
CAGAAGATATTTTTTAGAGTAAGTAAAAAGGCACTGTGAAATGAGTCAGCGTGTGATCCCATGT
AGACGTTAGCTAAGTCATTTCTCTCTGCATTCTTCTAGTTACATCCCTTGCTTTCTAACCTACC
TTCTGCGCTCACGCCCTCCTTCACCCGCCAAGTGCTCACTGAATGTCAGTGCACTGATCGGACA
AGCTCGTTAGCCATTCAGGAGAGTCTGTTTCAAGTAGCTCTTTTCTTCCCCCTGCAAGTATAGC
TAGGTCCCCTTAATCACTGTATCTTCCATTTTATTGTATGTCTCCATTATTCTAGGTAGATGGG
CACATCACTCTTTTACACTAATGTGTTTGACGCTGTCTGAAATCCAGTTTCTTTTCTGAAAGCT
TTTGGGTTCCTGAGCTTCCATGGGAGGCTCCACACACCCAGACACCCAACTGGCCTCTGTGCCA
CATCAGCGATGAAATTGCATCTGGCTTGTTTAAGTTCATAGCGTACCTCTTCAGGACCAAGTAT
CTGTGCAGGGAGGTGTAGGCCATACCTTCAATAACAGTCCTGTGAGTAAAAGAGATGTGCACAT
TGCCCAGAAGACCTCCCTGTATGTTTTACTCTTCCGTGTGCACATCTGTATCAGAGGCTGTGTC
AGTGGCTGGGAGTGAAGCTCATGCAGAAGAAGCCTTGCATGGTTGAAGCCCTGAGTTCAGTCCC
TAGTGCCTCACAAACTGGGCTTGGCGGTGTACATTCCTGTAACCAAGCCCAGCTTTGATTACGT
ACTGAGTTGGAGGCCATCCTAGGAAACTTGTACCTGCTGCATCAGACACTTACTAAGGAAATCA
GTCTGCTACTTCATGCCCAAAGTTTTCAGCTTCATGACTTTTGTTTGGGGGTGAGGGGGGGACA
AGCAAAACTTCCTGGACTTGGCCATTTGATAATCTTCAGCTCAAAGAAGGAATGGTTCCAATCT
GTTGTGTATGTGACTCTACCTTTATTAAAGGAGGGATTTATAAAGACATTGACCAGTGAGGCTG
TGAGAGCAGGCAGGAAAGGGAAATGGGGAGATAGATTCTTTGCTGGGATCCTAGAAACCCTGGA
TTAGCATTTTCTGTGTTCACAGTTAAAGGAGCATTTGTTGGCTGTTTAGCACAGCTGTCAAGGA
AAGGTTTATCATGGAGATGTGTATTAGAGCCGTGCTTCCTTGACAGATTTACATCTTAAAAGTC
ACCTCTGCATTATAGTGAGGAGGTCACATGAAGTTGTTAGCCTTAAGTAGAAGCCTGGCAGACT
GTAGCGTACTGGTGGGTCTCTCCTTAGAAAACCCCAATCTGGGCCTTGTCAGACTTGCCTGTGC
AGACTCGGGGGGAACCCTGGTGGGTTAAAAAGAAGGAAGAATCTTGGTGTAAAGGGTTCCACCC
GGTTACTACATCCAGTTTGGTCCCCAGGAGTTAGTAAGAGGAAGTTTTGGTTTTCATAGCGGTA
CACTAGATCTCTGGTGATGACTCAGTGCAAACACCTCTCCTTTCAGTCAGGGAATGATTCCTTG
TTGGTGAGATGAGGGCCTTGCAAGCCCACGTGTGTACTTAAGTATAGGCTAGGGGTGTACTTCA
AGTGGTAAAGCACACGCTTTGCAAGCACAAACTTGCACCGCCCCCCCCCCCCCCC

hide sequence

RefSeq Acc Id:

XM_017593400 ⟹ XP_017448889

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,632,367 - 138,682,796 (-)	NCBI
Rnor_6.0	5	144,355,792 - 144,396,827 (-)	NCBI

Sequence:

show sequence

ATGAATAATTAGAAGCTCAGAGGACTGGAAGTGAAGTTTCTGCCACTGCCTTTTACAAAGCACA
GCCTGTCATTCAGTTCATGTGTGAAGTTCTTGACATTCACAACATCGATGAGCAACCCAGACCC
CTGACCGATTCTCATCGGGTAAAATTCACTAAGGAGATAAAAGGTCTGAAGGTTGAAGTGACTC
ATTGTGGAACAATGAGACGGAAATACCGTGTCTGTAATGTAACAAGAAGGCCTGCCAGCCACCA
AACATTTCCTTTACAGCTAGAAAATGGCCAAACTGTGGAGAGAACTGTAGCTCAGTATTTCCGA
GAAAAGTACACACTTCAGCTGAAGTACCCACACCTTCCCTGTCTGCAAGTGGGGCAGGAGCAGA
AGCATACATACCTGCCACTAGAAGTCTGTAATATTGTGGCTGGACAGAGGTGTATCAAGAAACT
AACAGACAATCAGACTTCTACTATGATTAAGGCAACAGCAAGATCTGCACCAGATAGACAAGAG
GAAATTAGCAGATTGGTAAGAAGTGCAAATTATGAAACAGATCCATTTGTTCAGGAGTTTCAGT
TTAAAGTGCGGGATGAGATGGCCCATGTGACCGGTCGAGTACTGCCAGCACCTATGCTCCAGTA
TGGAGGACGGAACCGGACAGTAGCAACACCAAGCCACGGAGTATGGGACATGAGAGGAAAACAG
TTCCACACAGGAGTTGAAATCAAAATGTGGGCTATCGCTTGCTTTGCCACACAGAGGCAGTGCA
GAGAAGAAATACTGAAAGGATTCACAGACCAGCTTCGGAAGATCTCCAAGGATGCAGGGATGCC
CATCCAGGGTCAGCCATGTTTCTGCAAATACGCACAGGGGGCAGACAGCGTGGAGCCCATGTTC
CGGCATCTCAAGAATACCTACTCAGGACTGCAGCTCATTATCGTCATCCTGCCTGGGAAGACGC
CGGTATATGCGGAGGTGAAGCGTGTAGGAGACACACTTTTGGGTATGGCCACACAGTGTGTGCA
AGTCAAGAATGTAATAAAAACATCTCCTCAAACTCTTTCAAACTTGTGCCTAAAGATCAATGTT
AAACTTGGAGGAATCAATAATATTCTTGTACCTCATCAAAGACCTTCTGTGTTCCAGCAACCAG
TGATCTTCCTGGGCGCAGATGTCACACACCCGCCTGCTGGTGACGGGAAGAAGCCTTCCATTGC
TGCTGTTGTAGGCAGTATGGATGCCCATCCAAGCAGATACTGTGCCACAGTGAGAGTTCAGAGA
CCCCGACAGGAAATCATCCAGGACTTGGCCTCCATGGTCCGGGAACTGCTCATCCAATTTTACA
AGTCAACCCGATTCAAACCTACTCGGATCATCTTTTATCGGGATGGTGTTTCCGAAGGACAGTT
TAGACAGGTATTATATTATGAGCTCCTGGCAATTCGAGAAGCCTGTATCAGTTTGGAAAAAGAC
TATCAACCTGGAATAACCTACATTGTCGTTCAGAAGAGACATCATACGCGATTGTTCTGTGCTG
ATAGAACAGAAAGGGTGGGAAGAAGCGGCAACATCCCAGCTGGAACCACAGTGGATACAGACAT
CACTCACCCGTATGAATTCGACTTTTATCTCTGCAGCCATGCTGGAATACAGGGAACCAGCCGT
CCTTCTCACTATCACGTTCTGTGGGATGACAACTGCTTCACTGCGGATGAACTGCAGCTGCTGA
CCTACCAGCTCTGCCACACCTACGTGCGCTGTACCAGGTCCGTGTCGATCCCTGCACCAGCGTA
CTATGCTCACCTGGTGGCGTTCAGAGCCAGGTACCATCTGGTGGACAAGGAGCATGACAGTGCT
GAAGGAAGCCATGTGTCAGGACAGAGCAATGGACGAGATCCACAAGCTCTTGCCAAGGCTGTCC
AGATTCACCAAGATACCTTACGCACAATGTACTTCGCTTAGCAAGTCCAAGTGATCTCCGAGAG
GAAGAGCTGGAGCTCGTATGTTTCCAGTGGACTCAGTTCACTGGGGAGGCCTCCAGCCGCACAG
AAGCCAATACTATGTAGGGGTCTGGACCTTACGTTGATCCGAGGAAAAATGTTTACTCTGTCAA
AGAACACAGCACTGTTGTATACCAGGGAGCCAGCCCGCTGCTTTTTTGCAGTGTCCTGTAGAAG
AAGCATCACGGTTGTTCGTTCTCACTTCTTACAGTCTAACCCCATTAATACCTTTACCTCAAGT
TGCTTAGCGGCACAACCGTCTCTGCAAAAAAAGTAAAGAAAAAGTAAATGATGGTTTAAAAACA
CACACTTACACAAATAATGATTGCTCACTTACATGCAAAAAAAAGCAATGTGCATCTATTCTTG
TAAAGGAGTGTGTATTTTCATCACCCACACGTTACTTCATGTGCGTATGTATCTAGATCACGGA
TATGTACCTGTGTGTGTTCTATCATTCATTCCCCTGGGGAACTGTCTTTCCTTGTGTCCTTCAG
CATCTGTTCTTTTGTCCCTGTAGCTACAAATGACATTCGTATGTTCATGCATATGGCTCGTTTG
AAGGAAGGCTTGGCAAACTAGACCTCTGGTTTTATGTACCCTCCTCCTAGCTCCTGTCTCACAC
CCAGGAGTCCTCCACTCCCGACACCATGTTTGTGAGCGTCTGCTCCTTCCTGCTCTGGACTTAG
CCCCATGCGCACTGTGTTCAGCATAGTGGTGACCCAGGGTTCTTCCTGTAGTGAGTTTGTAAAG
CCACTGCACATACGAAATCTTGTCAGACCTTTCTGACCAGAGCAAATGTTCCAAAGCCTTCTGT
TGTATGAGTTATACCTGGAAATCCCTTCAAGCTTTTATAAAGGGAAAGATTTTAGAAATCTGAA
ACTCTGTAGGATGGAAAAAGGAAGGAATTGGGGTTGTTTTTGTTTTGTTTTTGCTAGTTTACTT
ACTGCCCTCAAACCTTAATGTGATTTCATTCATATATATATGTATGTATGTATGTATACACATA
ATATATGTTGAAGTATAGCTCCCTTTGCCTTTATATTCATTAGAATAGTGCTTTAATAATTATA
AACTGTATTGGCTACACTTTTTATAGAACTAGAATCATATTTAAGAACTGAGACAGTTTTTGCT
CTCTTTTAGTGCAATAAGCAGTTTTACAGGAAAGTCGTGTCTGTCGTCCTCACCATGGCTAGCA
GGAAGAACAGACATCTGTCATTTAAAGGGGGCAAAGTAATACAGCCTTAATTTCAGAAGGAGAG
TTTCCTTAGTTTCATAAATTCAGTTTTAAAGCAATTCCTTAAAACAGTTGTAGCCAAAGGAGTT
AAACCCATTAAAGGAGCCTCAGATAAGAGATCAGAGACGTAGTTGAACCTCCGTGTTTAAAAAT
AACAGTGAACAGCTTAAGATTTAAATATTTTTAAATTATCTGAAAATATATCTTACTTGTTGAA
CTGTGCTTCTTTGACTAAAAGGAGTCAAATACTGGATGGTTTTTTTCTATCTTTTTACCAGTGT
AACTTTCTCTTTAAAAGTAAGATGGCAATGATGAAGGAAATTAATACTTTGATCATTTAAAATT
AGTAAATTTCTAAAATACAGTGAAAACTCTTTAAAAACTTAGTTTTCTTCACTTCTTTAATCAG
TAACTTTAGTCACTAACTTTAAGCTATCAAAGCTTAGTTTCTCCGTAACGTCAGGTTCGGGAAC
TCTGCAGTTTGTAACTCATGACAATTGTGTGTGAATCTTCTCTGTTCTTGTCCCCACACCGGCT
CTGCGGACAAGCACTACAGATGTTTGTGGTGGGCGCTGTCAGCCTCTCAGAACTCCATCTGCCA
TGAGCAGGCACGTATTTAGGTCTTCGTTTGCTCTCTTACTGTTAGTCCACGTTTATGCCAATTT
ACTGTATTTTGAATCTAAAATCTGAGCCCATGTCCTACAGGCATGAATTCTTCTGTCCCTTTGC
CAGAACACTAAAGAAAGTACTGTATTTTATATGTTCGTTGCTTTGAAGTAACTAAAATGCAATT
CTCAATACTGTTTCAAAGCACTTTACAAAGGATATTTATGTACTTTATACAGTTTTTTTCCTTC
CAAAATATTCCCATCTCAACCCTAGCAAAAGAAATCTCCTTCTAACATATTTCGGGTTGGTTTG
TTTGCTTGTTTGCTTTGGAGACAAAGTCTCTCTCTATTGTCCATGCTGGCCCCCAACCCTGGGC
TCCAGAAGTATTCTCAACCTCCCTGGTAGTTAGGACCACTGCGCTCCTATCATCATGCCTGGCT
GTTGGGGAACATGGCCAAGAGAATAGAATGGGATAGCCTCCCTATCAAAAGTCTGACTGGATTG
TGTTTGCTTAGTATAACTAGAACACCTTCTTTGGCCCCTGCACATGTTCACGTGAGGAGCTTTG
GGGAGTGGCATGGGCACCCTGTTCCTTTCCTGACCTTTGATCTCACACATGCCAGAGTGAAACC
CTTACTTTAGCTCTTATTTGAAAGGATTTTTTTAAAGAAGAATTTTTTTTTCTAAAATAAGGTT
CTATCTTTTAAATGGCTCCTTTTTTAGAATGCATTTACATTATTGTCTTGCTAGTTTAAGATAA
TTAACTATACATAAAGACTATGTATAGTGTGTTTCTATTTTGCCTACTAATAAATTGGTATACC
AAGCAATGCCAACAAAGTTTGTGCTTAGGATTTTAAGATAAAAAGGCCTATAGAAATACTTCTT
GAAATTTATACTATTTTTCCATTTCTGGGTAGAACTCCTAATCTCTTTCCTAAGTTCCTTTCAG
TTTAAACATCATGAAGCCATAGTAATGTTTCTCTTCTGCCGCATTCTTGCTCCCAGCTGATGGA
TGTTGTCGGGGTTTGTTTTCTTTGTTTGTTTGTTTTTTTATAAAAGGCATGGCTTAGAAGAGTG
ACTGAAACGTCAATCTGAGCAACTTGTAGAAATTGATTCTCATGTGAAGAGTTGCGAGTTTAGT
GTATATTCTTGATGGCAAATGTGTGTGTAGAGTGTGCGTGTTACATGTCTGTATTCCGGTATCT
AAGCCCTGGCACTGAGACCGTATATTAATAATTCTGTGGCTGCTATATTTATTAATGCAGGTCT
GACATTTACTGCACTAAACAGTAAGGAGATAAGCAAGATGCCAGGCTAGTGTCAGACACTTTTT
GTTTCTCAGATAAGTCTAGGGACATAAAATATGAAGGTAACAAATAACAAGTACTTGAAACGGT
GCTGATTCCAGTTCAGTGACAGAACGCCTTTGCTTTAGAAACGTAGTTTTCTTTTACATTGATA
GTCCACGTGAGGGCACTAAAGTCTTCTCGGTTCTGGGTTCTGGCACATTTCCACAGAAATATGG
AAACCTTTTGTTTTATTAATAATTATTTTTTAACACGTTTTCCAGGAAAAATAGTCTGGAAATA
CATAGTAAATGACCTATTAGTTTATTTTTGTTCCTAAAGAGAATCTAGAAGGGACCCCAGTAAG
AACGTTCTGTGTGTTTGGGAAGGCATTTGGTTGAAGACACTCCTCACCTTCAAAAAACCCAAGG
ACTTGTCCAAGCCAGGCCCTCTCTGGTTCCCATAGCCCAGTAGTGACTTTCACAGTATCTTGTG
GAACTTAGGGTGGCGAGCTTGATGTGTGTCTTGGAATAAGAAACCAGCTGCTCTTGAGTAAGAA
TAGCTTCCAGATCTCAGTAACAGGCAGCGTGAGCACTTGGAGAGCAGCCATAGAAGCGAAGCCC
AGGGAGATGAATATCATAACACGTGGTGGGGCTTTTCACTTGCTTAATTCTCAAGAAAATCAAG
GGCCTCGACACTTTGGGCATTGGGAGAATAGTTCCCTTTCTCTTTCAAACCTTCATAGTAATGT
TTCTCCAAGAGGTTTAACTGACCTCTCTGCATAATTTTCACTGGCTGTCATTAAACTGAGTTCT
ATGTTCAATTAAGCTGAGTATAAGGTGCAACCCCAACCCTCAGGAGCATCAGGAATTCAAAGCC
AGCCTCAGCAACAGGAGGCCATGGCTAAAACACAGACGTCCTGTGTTCCTCCTCCCTAGGCACT
CAGCGGTTCCGTGTAGCTTACCCGTCCCTTTCAAGTTGTGTGGGTTCCTCAAAGACGGACAGGA
TACATAGGAATACTGTGTCCCCAACTGCCAAACCCCCTGCTCCCAAAAAAAAGAAAAACACCAG
ACAAATCAGAAAGAGAATCGTCTCCAAAACATATTGGCAACATTGAATGTGATGCTGTGATTAA
TTAGACCCAGGCGATAGCGATTAGATAGCGATAAATAAAATACATCGCGAGAGAAAAAGGATTA
TAATAACAGCACATTTTATGTTTCTAATTCTCCCTGTAAGTCTGCAACTTTAAAATGAATAAAG
GCTTCTGTTGATATTATCCATGGCCAGATGAAATTTACCTCACCCCTCCAAAGGAGTGCCTAGA
GTTTTCTTCAGAATCTTTTGTTCTCAAAGCACAGAAGTTAACGACATTAGCTTGAATAAAAGGA
TGGTGAACCTCAGTGTGGTGGGTTCAATTCCCGGTAGAAGACCATGTTAAAGTTATAGGTAGCG
AACTGATGACAAATTAGGATCTTCTCGAGTCACCCAGCCAGCCAGTGGGCCCCCTTCCTTGTTT
GAAATCTATGTCTAAGGTCACCAGAATCTGCTACTGTTTTCCATTAGAGTCTCAGTAAAGAGGT
TTTCCAGGTAGACACTGGGTTTTAAGTCGTTTTTTAAAGCAAAGTGGTTCTTAGAAAGTGCCTT
TTCTGAAGATGGTGCTGTAGATTTTTACTTTTCAAACAACGTAAAGCTAAAAATTTTTATGATA
ATTTAGAATACCAAGAGTATGCCAGTTTCATATAAATAGTGTCGTTTGTCCTGAATTTGGTCAG
GAGAACCAAGGGACTTGTGTGTAGTAACATGTCTCTCAGTTAATGCTCACCAAATCGATTTTGT
AAATTTGAAAATATAATTTTTAATTCTCAGTTATGTTTAAAGTGTTTATAATATACATAAGATA
GGAGATATAGTAGTAAGCACCCCGTGGCAAAGGTACCATGGCAGGAACTGTATTATGAGGAGCT
TTTCCGTTTTCAGCACGTTACCTCCTGACCTAACCTTTCCTTCTGACTCAACGTTAAGGACAGT
ACATACAAGGGAAGAGCTGCGTCACTGAGACCAGTTCAAGAGAGCAAGCAACATGAGAGCTCAG
TCCTTAGGGAACTGTTGGGTTTTAGACAGTAATGACTATTTTACATGATTCCTGCTTTTTTAGG
TCAGAAGGACTGTAGAAAATGACAGGAAGAGGGCATGGTCAATTATTTTTCAATAGATCATAGT
CTGAGGATATATAACTACTCACTGGAAGGGTACTTAGCGAATACAAAGCCCCGATTTCGCCCCT
AGCCCTAGGGAGGAAAACGTGTAAATGTGGGCTGTGAGAATAAGCAAAGTGAGACCATTTAAGC
CCACTAGGAACTCAGTCATCTGTTGGGAAGCTAGCAGCCTTTTCTTACAACTAAATGGTCAATT
AACCAATTCCTCTTGTGAATTTAGTGACCATTCCTCCAGACAATAACTATGCTAAAAACACACA
GAAACCACCACCCCTCAGTAACCTTGTCTGCAGCGTAATGTAAGAATGTCAGTAAAATTACACT
GGTTATCTGGGGTGAGCTGTGTCTGTTCGCACATTAAACTTTTTCATTTTTATAAGGTCTTAAT
AGAAATTATTAGCTTATTTTTAAGATTAATTTTTCTATAGTGATGTTCATATTTATTGGCAATT
CGTGTGCAACTTTTGCATTTTGCCCAGATGTTAGATTTAAGGTATTTTATTTTTATAAATATAT
CTAGCTTTTCTCTTTCTTTGTGATATTAGCAGAAATTGAGATAGTGTTAATATATCAGCCAAAC
TACTAATTCTATAGAGTTTGGATTTTTACCAATAAACCGTTAACCCGATTTTCTACTTTAGAAT
ATTTAGTACTTTATATAATGGGCATTAAAGACAGTCCCTAGGTGGGTTTCTACATGTGGATAGG
AGGGAGGGCCTCTGTAAGCTAGGTTCATTTTCCTCCTCCATTTGATAGCAAACAAACATTAACA
AATTGGCTTTATTTTACCTGATTCCATCTTGGAGGATGTTGTCAAATAAATGATCTTTGGTTTC
TTTTGTTAGCTTGAGGCACATTGCTCAAGATTGTGATTCATGGGGTTGGGGATTTAGCTCAGTG
GTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCAAGCTCCAAAAAAAAAAAAA
AAAAAAAAAGATTGTGATTCATTTTTATAGTCGGGAAGACAAATAGAAAAGGATATACAAGTTA
TTGATAATTGATTCCCAAGTGAGATTTTCCTTCCATAATTATTTGGAAGATTTGCTACCCTGAA
CTCCCCTAGAAGAGTTTCAAAGTTGGTTCAACCCTGAGTATTGGTGAAGAAAAAAGAGTGTAGG
TGTCTGGGAAGAACAAAGACAGAATGATAAAAGCATTTCATCTGATTAAAATTGACCTCAGAAG
GCCCGAAGTGCATGGCTTTAATAGCAGTACTCAAGCAGAGGCAGGCTGACCTCTGCAAATTCCA
GGCCAGCCTCGGCTACTTAGTGAGGTCCAGGTCATCCAGGGCCTCATAGTGAGAGCTTATCACC
AAGTATACAAAAGTTAAGTAGTAACATGAACTAATTGAAAAGCAATAAAAGTGTGATTATAGAA
TATTAATTTCAAGGATATAAAATCACTGAAGTTTTTTTAGTAGTTCAATCTCCCTTTATATTGG
CACATTAATTCCTTTAAGTATATGAAAAAGATATATTATTCCCTAAAGAAGATAAAATCTGTCC
ATTATATTTCTACACTCCTACTTTGCTTGCTAAGGAATTCTTCTTTCCTGTGAGAAATGAAAAG
AGAAACTCTATCCTTTCTTGAATTTTTAAATGTCAAATCGTTGGGGCTCCATGCACTTCACTTC
CCTCGCTGTACTCCTTTCTCCACTGAGAGGGGGGAATTGGGAAGGTTTTAGGGACTTGCAAACC
AGAAGATATTTTTTAGAGTAAGTAAAAAGGCACTGTGAAATGAGTCAGCGTGTGATCCCATGTA
GACGTTAGCTAAGTCATTTCTCTCTGCATTCTTCTAGTTACATCCCTTGCTTTCTAACCTACCT
TCTGCGCTCACGCCCTCCTTCACCCGCCAAGTGCTCACTGAATGTCAGTGCACTGATCGGACAA
GCTCGTTAGCCATTCAGGAGAGTCTGTTTCAAGTAGCTCTTTTCTTCCCCCTGCAAGTATAGCT
AGGTCCCCTTAATCACTGTATCTTCCATTTTATTGTATGTCTCCATTATTCTAGGTAGATGGGC
ACATCACTCTTTTACACTAATGTGTTTGACGCTGTCTGAAATCCAGTTTCTTTTCTGAAAGCTT
TTGGGTTCCTGAGCTTCCATGGGAGGCTCCACACACCCAGACACCCAACTGGCCTCTGTGCCAC
ATCAGCGATGAAATTGCATCTGGCTTGTTTAAGTTCATAGCGTACCTCTTCAGGACCAAGTATC
TGTGCAGGGAGGTGTAGGCCATACCTTCAATAACAGTCCTGTGAGTAAAAGAGATGTGCACATT
GCCCAGAAGACCTCCCTGTATGTTTTACTCTTCCGTGTGCACATCTGTATCAGAGGCTGTGTCA
GTGGCTGGGAGTGAAGCTCATGCAGAAGAAGCCTTGCATGGTTGAAGCCCTGAGTTCAGTCCCT
AGTGCCTCACAAACTGGGCTTGGCGGTGTACATTCCTGTAACCAAGCCCAGCTTTGATTACGTA
CTGAGTTGGAGGCCATCCTAGGAAACTTGTACCTGCTGCATCAGACACTTACTAAGGAAATCAG
TCTGCTACTTCATGCCCAAAGTTTTCAGCTTCATGACTTTTGTTTGGGGGTGAGGGGGGGACAA
GCAAAACTTCCTGGACTTGGCCATTTGATAATCTTCAGCTCAAAGAAGGAATGGTTCCAATCTG
TTGTGTATGTGACTCTACCTTTATTAAAGGAGGGATTTATAAAGACATTGACCAGTGAGGCTGT
GAGAGCAGGCAGGAAAGGGAAATGGGGAGATAGATTCTTTGCTGGGATCCTAGAAACCCTGGAT
TAGCATTTTCTGTGTTCACAGTTAAAGGAGCATTTGTTGGCTGTTTAGCACAGCTGTCAAGGAA
AGGTTTATCATGGAGATGTGTATTAGAGCCGTGCTTCCTTGACAGATTTACATCTTAAAAGTCA
CCTCTGCATTATAGTGAGGAGGTCACATGAAGTTGTTAGCCTTAAGTAGAAGCCTGGCAGACTG
TAGCGTACTGGTGGGTCTCTCCTTAGAAAACCCCAATCTGGGCCTTGTCAGACTTGCCTGTGCA
GACTCGGGGGGAACCCTGGTGGGTTAAAAAGAAGGAAGAATCTTGGTGTAAAGGGTTCCACCCG
GTTACTACATCCAGTTTGGTCCCCAGGAGTTAGTAAGAGGAAGTTTTGGTTTTCATAGCGGTAC
ACTAGATCTCTGGTGATGACTCAGTGCAAACACCTCTCCTTTCAGTCAGGGAATGATTCCTTGT
TGGTGAGATGAGGGCCTTGCAAGCCCACGTGTGTACTTAAGTATAGGCTAGGGGTGTACTTCAA
GTGGTAAAGCACACGCTTTGCAAGCACAAACTTGCACCGCCCCCCCCCCCCCCC

hide sequence

RefSeq Acc Id:

XM_039110019 ⟹ XP_038965947

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,632,367 - 138,690,354 (-)	NCBI

RefSeq Acc Id:

XM_039110020 ⟹ XP_038965948

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,632,367 - 138,668,808 (-)	NCBI

RefSeq Acc Id:

XR_005504456

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	138,647,902 - 138,714,227 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258122	(Get FASTA)	NCBI Sequence Viewer
	XP_008762246	(Get FASTA)	NCBI Sequence Viewer
	XP_017448889	(Get FASTA)	NCBI Sequence Viewer
	XP_038965947	(Get FASTA)	NCBI Sequence Viewer
	XP_038965948	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001258122 ⟸ NM_001271193

- UniProtKB:

F1LUS2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEIGSAGPIGAQPLLIVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNR
EVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSVKFV
SRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHP
LGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHR
VKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQ
LKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLV
RSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVE
IKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT
YSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGIN
NILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEII
QDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGIT
YIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHV
LWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVS
GQSNGRDPQALAKAVQIHQDTLRTMYFA

hide sequence

RefSeq Acc Id:

XP_008762246 ⟸ XM_008764024

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQ
LENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQT
STMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNR
TVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQP
CFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVI
KTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGS
MDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLY
YELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYE
FDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLV
AFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA

hide sequence

RefSeq Acc Id:

XP_017448889 ⟸ XM_017593400

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQ
LENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQT
STMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNR
TVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQP
CFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVI
KTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGS
MDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLY
YELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYE
FDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLV
AFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA

hide sequence

RefSeq Acc Id:

ENSRNOP00000050518 ⟸ ENSRNOT00000042371

RefSeq Acc Id:	XP_038965947 ⟸ XM_039110019
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965948 ⟸ XM_039110020
- Peptide Label:	isoform X2

Protein Domains

PAZ Piwi

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694036

Promoter ID:

EPDNEW_R4561

Type:

single initiation site

Name:

Ago3_1

Description:

argonaute 3, RISC catalytic component

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	144,436,501 - 144,436,561	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	144386012	144386013	G	C	snv	MR/N (MCW)
5	144386013	144386014	C	G	snv	MR/N (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309163	AgrOrtholog
Ensembl Genes	ENSRNOG00000034269	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000050518	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042371	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.10	UniProtKB/TrEMBL
InterPro	AGO3	UniProtKB/TrEMBL
	ArgoL2	UniProtKB/TrEMBL
	Argonaute_Mid_dom	UniProtKB/TrEMBL
	Argonaute_N	UniProtKB/TrEMBL
	DUF1785	UniProtKB/TrEMBL
	PAZ	UniProtKB/TrEMBL
	PAZ_dom_sf	UniProtKB/TrEMBL
	Piwi	UniProtKB/TrEMBL
	RNaseH-like_dom	UniProtKB/TrEMBL
	RNaseH_sf	UniProtKB/TrEMBL
KEGG Report	rno:313593	UniProtKB/TrEMBL
NCBI Gene	313593	ENTREZGENE
Pfam	ArgoL2	UniProtKB/TrEMBL
	ArgoMid	UniProtKB/TrEMBL
	ArgoN	UniProtKB/TrEMBL
	DUF1785	UniProtKB/TrEMBL
	PAZ	UniProtKB/TrEMBL
	Piwi	UniProtKB/TrEMBL
PhenoGen	Ago3	PhenoGen
PROSITE	PAZ	UniProtKB/TrEMBL
	PIWI	UniProtKB/TrEMBL
SMART	DUF1785	UniProtKB/TrEMBL
	PAZ	UniProtKB/TrEMBL
	Piwi	UniProtKB/TrEMBL
Superfamily-SCOP	PAZ	UniProtKB/TrEMBL
	RNaseH_fold	UniProtKB/TrEMBL
UniProt	F1LUS2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-12-04	Ago3	argonaute RISC catalytic component 3	Ago3	argonaute 3, RISC catalytic component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-02	Ago3	argonaute 3, RISC catalytic component	Ago3	argonaute RISC catalytic component 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-02-22	Ago3	argonaute RISC catalytic component 3	Eif2c3	eukaryotic translation initiation factor 2C, 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Eif2c3	eukaryotic translation initiation factor 2C, 3	Eif2c3_predicted	eukaryotic translation initiation factor 2C, 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Eif2c3_predicted	eukaryotic translation initiation factor 2C, 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations