Bss114 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bss114 (Bone structure and strength QTL 114) Rattus norvegicus

Symbol: Bss114
Name: Bone structure and strength QTL 114
RGD ID: 11528624
Trait: femur strength trait   (VT:0010010)    
Measurement Type: femur total energy absorbed before break   (CMO:0001677)    
LOD Score: 6.54
P Value: 2.87E-7
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25124,399,325 - 126,768,268RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05129,335,618 - 131,897,286RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05133,169,655 - 135,721,853RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45131,000,281 - 133,500,122RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs197434291)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25124,399,325 - 124,399,325RGD
Rnor_6.05129,335,618 - 129,335,618RGD
Peak: (rs198651987)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25125,309,350 - 125,309,350RGD
Rnor_6.05130,254,591 - 130,254,591RGD
Flank 2: (rs105692231)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25126,768,268 - 126,768,268RGD
Rnor_6.05131,897,286 - 131,897,286RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and right femurs were analyzed using a material testing machine (Alliance RT/5,MTS Systems Corp., Eden Prairie, USA). 11528619