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Gene: Ccdc17 (coiled-coil domain containing 17) Rattus norvegicus

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Symbol:

Ccdc17

Name:

coiled-coil domain containing 17

RGD ID:

1598211

Description:

Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human CCDC17 (coiled-coil domain containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coiled-coil domain-containing protein 17; LOC500528; similar to hypothetical protein FLJ33084

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC17 (coiled-coil domain containing 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cox7b (cytochrome c oxidase subunit 7B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cox7b (cytochrome c oxidase subunit 7B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC17 (coiled-coil domain containing 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc17 (coiled-coil domain containing 17)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc17	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI		GRCr8
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,677,052 - 132,680,745 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,431,649 - 134,435,342 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,454,042 - 134,457,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,791 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	128,580,417 - 128,584,109 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

colorectal adenocarcinoma (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

amiodarone (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

bisphenol F (ISO)

carbon nanotube (ISO)

clothianidin (ISO)

clotrimazole (EXP)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

fipronil (EXP)

gentamycin (EXP)

methapyrilene (ISO)

methimazole (EXP)

ozone (ISO)

paracetamol (ISO)

pentanal (ISO)

permethrin (ISO)

pirinixic acid (ISO)

quercetin (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer.	Kang BW, etal., Anticancer Res. 2016 Jul;36(7):3353-61.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:12947022

Genomics

Comparative Map Data

Ccdc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI		GRCr8
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,677,052 - 132,680,745 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,431,649 - 134,435,342 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,454,042 - 134,457,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,791 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	128,580,417 - 128,584,109 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

CCDC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	45,620,044 - 45,624,054 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	45,620,044 - 45,624,057 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,085,716 - 46,089,726 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	45,858,303 - 45,862,260 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	44,369,706 - 44,373,721 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,196,974 - 44,200,989 (-)	NCBI		HuRef
CHM1_1	1	46,202,867 - 46,206,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	45,492,399 - 45,496,409 (-)	NCBI		T2T-CHM13v2.0

Ccdc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,453,927 - 116,457,463 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,453,851 - 116,457,463 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,596,730 - 116,600,266 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.24	NCBI

Ccdc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,662,596 - 12,665,957 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,661,440 - 12,667,388 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	181,183,265 - 181,190,140 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	180,324,553 - 180,331,695 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	44,921,301 - 44,926,090 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,279,879 - 46,283,930 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,279,879 - 46,283,930 (-)	Ensembl	panpan1.1		panPan2

CCDC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,735,383 - 14,740,146 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,736,440 - 14,739,977 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,857,439 - 14,861,238 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,890,796 - 14,894,595 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	15	14,688,232 - 14,692,024 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,757,908 - 14,761,707 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,827,851 - 14,831,650 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,919,611 - 60,923,611 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	26,744,603 - 26,748,165 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	26,744,393 - 26,748,173 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	165,768,569 - 165,772,763 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,174,581 - 87,179,411 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,175,451 - 87,180,323 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	1,519,926 - 1,523,376 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	1,518,716 - 1,525,012 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	145
Count of miRNA genes:	99
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000034464
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130678987	145274255	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH128376

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,056,344 - 130,056,526 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,445,463 - 135,445,644	NCBI	Rnor6.0
Rnor_5.0	5	139,241,644 - 139,241,825	UniSTS	Rnor5.0
RGSC_v3.4	5	136,883,114 - 136,883,295	UniSTS	RGSC3.4
Celera	5	128,583,778 - 128,583,959	UniSTS
RH 3.4 Map	5	838.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH144284

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,052,194 - 130,052,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,441,313 - 135,441,447	NCBI	Rnor6.0
Rnor_5.0	5	139,237,494 - 139,237,628	UniSTS	Rnor5.0
RGSC_v3.4	5	136,878,964 - 136,879,098	UniSTS	RGSC3.4
Celera	5	128,579,628 - 128,579,762	UniSTS
RH 3.4 Map	5	836.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA926261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC120450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI292365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF114603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK476945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO385240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO398762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034464 ⟹ ENSRNOP00000034089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,442,102 - 135,445,791 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090852 ⟹ ENSRNOP00000075436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,775 (+)	Ensembl

RefSeq Acc Id:

NM_001014067 ⟹ NP_001014089

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,647 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,052,984 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,442,102 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	RGD
Celera	5	128,580,417 - 128,584,109 (+)	RGD

Sequence:

show sequence

TGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCA
GTCTACCTTTTCCCTTTTACCACATCCTCTGTAGGACGCTGGTGTCTTTAACAGATTCCATCCC
ATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCT
CCAGAGCTTTGTTGGCCAAACACACCAAGCGATTCTGCATTGGCGGACTGACTCCGGAGATTAT
GGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAG
GAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCTGGGCGACTGACACTTCCCAGA
CTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGA
AACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAATTAAAACGGCGCCTCCACAGC
GTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCA
GGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGGAGCGCGTGTTCAGGCGCTCCA
GCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGG
TACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTGAGGTCTACGTGCGCGGTGGAG
GCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATT
GCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCTGAGGAGGCTCTAATGGTGGAA
GCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGT
CGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAGGAGTGATAACTCCCTCCTCCC
TCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGC
ACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGGGTCTGGATCTCCACTTCCTAC
CAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGA
CTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTAATGACAAGCTTGGCCCGAGAT
GGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTT
CTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACCTGTGCCGAGGCTGCCTCCATC
ACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCA
AAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGGTGCTTAGTGGCCGTTGGCGCC
TCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGT
AAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATGGAGTACCACTTCCTCTGTCAG
GCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGG
CAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACCAATGATGTCCAGTTCATCTTC
CCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAG
ACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCACCAGTTTTGAAGGAAACACT
AATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAA
TACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTAGCCAACTTTATATAAAAAG
CCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCA
AAATATTTAGTCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238702 ⟹ XP_006238764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCA
CCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTG
CAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAAT
AGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGG
TAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAA
CTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGC
CTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAA
GTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGAT
CCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCC
AGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCT
GGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGC
TTTGCCCAGATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGA
TTCCAATGGAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAA
CGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAG
TACCCACCAATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCA
TTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTT
GAGTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTT
ACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTT
TCTTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTA
TAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238703 ⟹ XP_006238765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCA
CCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTG
CAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAAT
AGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGG
TAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAA
CTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGC
CTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAA
GTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGAT
CCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCC
AGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCT
GGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGC
TTTGCCCAGATGAATGAGATGCCCCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACG
CAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTA
CCCACCAATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATT
GCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGA
GTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTAC
AGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTC
TTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATA
AAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238704 ⟹ XP_006238766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCT
TCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCT
GGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAAC
ACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAA
TTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGG
AGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGG
AGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAA
TTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTG
AGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGT
GGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCT
GAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGA
AGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAG
GAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACA
AAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGG
GTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGC
TGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTA
ATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTT
GCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACC
TGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGT
GTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGG
TGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCA
GATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATG
GAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAG
ATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACC
AATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGAC
CCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTC
ACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGC
AGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAAC
TAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAG
ATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238705 ⟹ XP_006238767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCA
CCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTG
CAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAAT
AGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGG
TAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAA
CTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGC
CTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAA
GTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGAT
CCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCC
AGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCT
GGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGC
TTTGCCCAGATGAATGAGATGCCCCAGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCA
CCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGA
TAAAGATGAGCACTTGAGTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTT
TTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAA
CACTAAACCTGCTTTTCTTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCA
TTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238706 ⟹ XP_006238768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCA
CCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTG
CAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAAT
AGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGG
TAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGC
TGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTA
ATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTT
GCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACC
TGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGT
GTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGG
TGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCA
GATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATG
GAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAG
ATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACC
AATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGAC
CCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTC
ACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGC
AGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAAC
TAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAG
ATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238707 ⟹ XP_006238769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCT
TCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCT
GGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAAC
ACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAA
TTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGG
AGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGG
AGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAA
TTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTG
AGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGT
GGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCT
GAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGA
AGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAG
GAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACA
AAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGG
GTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGC
TGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTA
ATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTT
GCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACC
TGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGT
GTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGG
TGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCA
GATGAATGAGATGCCCCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGAT
ACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACCAA
TGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCC
TCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCAC
CAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAG
CAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTA
GCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGAT
CCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_039110589 ⟹ XP_038966517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110590 ⟹ XP_038966518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110591 ⟹ XP_038966519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110592 ⟹ XP_038966520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,290,769 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,054,106 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110594 ⟹ XP_038966522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,612 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,054,949 (+)	NCBI

RefSeq Acc Id:

XM_063288238 ⟹ XP_063144308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI

RefSeq Acc Id:

XM_063288239 ⟹ XP_063144309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI

RefSeq Acc Id:

XM_063288240 ⟹ XP_063144310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,147 (+)	NCBI

RefSeq Acc Id:

XM_063288241 ⟹ XP_063144311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,147 (+)	NCBI

RefSeq Acc Id:

XR_005504522

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,993 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,339 (+)	NCBI

RefSeq Acc Id:

XR_005504525

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,085 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,421 (+)	NCBI

RefSeq Acc Id:

XR_005504526

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,601 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,054,938 (+)	NCBI

RefSeq Acc Id:

XR_005504527

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,801 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,138 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014089	(Get FASTA)	NCBI Sequence Viewer
	XP_006238764	(Get FASTA)	NCBI Sequence Viewer
	XP_006238765	(Get FASTA)	NCBI Sequence Viewer
	XP_006238766	(Get FASTA)	NCBI Sequence Viewer
	XP_006238767	(Get FASTA)	NCBI Sequence Viewer
	XP_006238768	(Get FASTA)	NCBI Sequence Viewer
	XP_006238769	(Get FASTA)	NCBI Sequence Viewer
	XP_038966517	(Get FASTA)	NCBI Sequence Viewer
	XP_038966518	(Get FASTA)	NCBI Sequence Viewer
	XP_038966519	(Get FASTA)	NCBI Sequence Viewer
	XP_038966520	(Get FASTA)	NCBI Sequence Viewer
	XP_038966522	(Get FASTA)	NCBI Sequence Viewer
	XP_063144308	(Get FASTA)	NCBI Sequence Viewer
	XP_063144309	(Get FASTA)	NCBI Sequence Viewer
	XP_063144310	(Get FASTA)	NCBI Sequence Viewer
	XP_063144311	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034089.5
	ENSRNOP00000075436.2

RefSeq Acc Id:

NP_001014089 ⟸ NM_001014067

- UniProtKB:

A0A0G2KAL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEIMAQEQRRSDQEATKSSLKRLTE
ETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHS
VAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLR
YNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVE
AENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHG
TSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARD
GQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQP
KAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEGRDWLHPKIPMEYHFLCQ
AGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEE
TFVSVEDKDEHLSPHQF

hide sequence

RefSeq Acc Id:	XP_006238767 ⟸ XM_006238705
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTA GSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGR DPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSP WGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPA SNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASG PIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLP LRVPPTTSLSFAQMNEMPQMSSSSSLESSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238765 ⟸ XM_006238703
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTA GSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGR DPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSP WGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPA SNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASG PIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLP LRVPPTTSLSFAQMNEMPQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLE SSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238764 ⟸ XM_006238702
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTA GSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGR DPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSP WGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPA SNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASG PIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLP LRVPPTTSLSFAQMNEMPQVSVEGRDWLHPKIPMEYHFLCQAGQAELFLRLVNARDTDAQTLAE INPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238769 ⟸ XM_006238707
- Peptide Label:	isoform X15
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKIMAQEQ RRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQ SRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPA HQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQ NRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVA PPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRG LEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLS LICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQAGQAE LFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEETFVSV EDKDEHLSPHQF hide sequence

RefSeq Acc Id:

XP_006238768 ⟸ XM_006238706

- Peptide Label:

isoform X8

- Sequence:

show sequence

MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC
RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTA
GSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE
EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRAGLVIFYDFLRG
LEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLS
LICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEG
RDWLHPKIPMEYHFLCQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESS
FFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF

hide sequence

RefSeq Acc Id:	XP_006238766 ⟸ XM_006238704
- Peptide Label:	isoform X4
- UniProtKB:	D3ZMQ6 (UniProtKB/TrEMBL), A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKIMAQEQ RRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQ SRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPA HQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQ NRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVA PPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRG LEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLS LICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEG RDWLHPKIPMEYHFLCQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESS FFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

Ensembl Acc Id:

ENSRNOP00000075436 ⟸ ENSRNOT00000090852

Ensembl Acc Id:

ENSRNOP00000034089 ⟸ ENSRNOT00000034464

RefSeq Acc Id:	XP_038966517 ⟸ XM_039110589
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966518 ⟸ XM_039110590
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966519 ⟸ XM_039110591
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966522 ⟸ XM_039110594
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038966520 ⟸ XM_039110592
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063144308 ⟸ XM_063288238
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063144309 ⟸ XM_063288239
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063144310 ⟸ XM_063288240
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063144311 ⟸ XM_063288241
- Peptide Label:	isoform X13

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMQ6-F1-model_v2	AlphaFold	D3ZMQ6	1-593	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1598211	AgrOrtholog
BioCyc Gene	G2FUF-40247	BioCyc
Ensembl Genes	ENSRNOG00000023216	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034464.5	UniProtKB/TrEMBL
	ENSRNOT00000090852.2	UniProtKB/TrEMBL
InterPro	CCDC17	UniProtKB/TrEMBL
NCBI Gene	500528	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 17	UniProtKB/TrEMBL
	PTHR33820	UniProtKB/TrEMBL
PhenoGen	Ccdc17	PhenoGen
RatGTEx	ENSRNOG00000023216	RatGTEx
UniProt	A0A0G2KAL0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMQ6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ccdc17	coiled-coil domain containing 17	LOC500528	similar to hypothetical protein FLJ33084	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC500528	similar to hypothetical protein FLJ33084			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar