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Gene: Ccdc17 (coiled-coil domain containing 17) Rattus norvegicus

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Symbol:

Ccdc17

Name:

coiled-coil domain containing 17

RGD ID:

1598211

Description:

Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human CCDC17 (coiled-coil domain containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coiled-coil domain-containing protein 17; LOC500528; similar to hypothetical protein FLJ33084

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC17 (coiled-coil domain containing 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc17 (coiled-coil domain containing 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cox7b (cytochrome c oxidase subunit 7B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cox7b (cytochrome c oxidase subunit 7B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC17 (coiled-coil domain containing 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc17 (coiled-coil domain containing 17)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc17	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI		GRCr8
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,677,052 - 132,680,745 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,431,649 - 134,435,342 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,454,042 - 134,457,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,791 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	128,580,417 - 128,584,109 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc17	Rat	colorectal adenocarcinoma	susceptibility	ISO	RGD:1603565	152177496	DNA:SNP:3'utr: (rs2275085) T>C (human)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc17	Rat	Charcot-Marie-Tooth disease dominant intermediate C		ISO	RGD:1603565	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate C	ClinVar	PMID:28492532
Ccdc17	Rat	developmental and epileptic encephalopathy		ISO	RGD:1603565	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
Ccdc17	Rat	early infantile epileptic encephalopathy		ISO	RGD:1603565	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc17	Rat	1,2-dimethylhydrazine	decreases expression	ISO	RGD:408345396	6480464	1,2-Dimethylhydrazine results in decreased expression of CCDC17 mRNA	CTD	PMID:22206623
Ccdc17	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of CCDC17 mRNA	CTD	PMID:32109520
Ccdc17	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of CCDC17 mRNA	CTD	PMID:33387578
Ccdc17	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:408345396	6480464	bisphenol S results in increased expression of CCDC17 mRNA	CTD	PMID:30951980\|PMID:39298647
Ccdc17	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of CCDC17 mRNA	CTD	PMID:30047161
Ccdc17	Rat	aflatoxin B1	increases expression	ISO	RGD:1603565	6480464	Aflatoxin B1 results in increased expression of CCDC17 mRNA	CTD	PMID:21641981
Ccdc17	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of CCDC17 mRNA	CTD	PMID:33354967
Ccdc17	Rat	aflatoxin B1	increases methylation	ISO	RGD:1603565	6480464	Aflatoxin B1 results in increased methylation of CCDC17 gene; Aflatoxin B1 results in increased methylation more ...	CTD	PMID:28458013\|PMID:30157460
Ccdc17	Rat	Aflatoxin B2 alpha	increases methylation	ISO	RGD:1603565	6480464	aflatoxin B2 results in increased methylation of CCDC17 intron	CTD	PMID:30157460
Ccdc17	Rat	amiodarone	increases expression	ISO	RGD:1603565	6480464	Amiodarone results in increased expression of CCDC17 mRNA	CTD	PMID:19774075
Ccdc17	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of CCDC17 mRNA	CTD	PMID:30047161
Ccdc17	Rat	aristolochic acid A	increases expression	ISO	RGD:1603565	6480464	aristolochic acid I results in increased expression of CCDC17 mRNA	CTD	PMID:33212167
Ccdc17	Rat	atrazine	increases expression	ISO	RGD:1603565	6480464	Atrazine results in increased expression of CCDC17 mRNA	CTD	PMID:22378314
Ccdc17	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1603565	6480464	Benzo(a)pyrene affects the methylation of CCDC17 intron; Benzo(a)pyrene affects the methylation of CCDC17 promoter	CTD	PMID:27901495\|PMID:30157460
Ccdc17	Rat	benzo[e]pyrene	increases methylation	ISO	RGD:1603565	6480464	benzo(e)pyrene results in increased methylation of CCDC17 intron	CTD	PMID:30157460
Ccdc17	Rat	bis(2-ethylhexyl) phthalate	multiple interactions	EXP		6480464	[bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of CCDC17 more ...	CTD	PMID:23359474
Ccdc17	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of CCDC17 more ...	CTD	PMID:23359474
Ccdc17	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CCDC17 mRNA	CTD	PMID:25181051\|PMID:30816183\|PMID:32528016
Ccdc17	Rat	bisphenol F	increases expression	ISO	RGD:408345396	6480464	bisphenol F results in increased expression of CCDC17 mRNA	CTD	PMID:30951980
Ccdc17	Rat	carbon nanotube	decreases expression	ISO	RGD:408345396	6480464	Nanotubes, Carbon analog results in decreased expression of CCDC17 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25554681
Ccdc17	Rat	clothianidin	decreases expression	ISO	RGD:1603565	6480464	clothianidin results in decreased expression of CCDC17 mRNA	CTD	PMID:29044138
Ccdc17	Rat	clotrimazole	decreases expression	EXP		6480464	Clotrimazole results in decreased expression of CCDC17 mRNA	CTD	PMID:30047161
Ccdc17	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of CCDC17 mRNA	CTD	PMID:26577399
Ccdc17	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1603565	6480464	di-n-butylphosphoric acid affects the expression of CCDC17 mRNA	CTD	PMID:37042841
Ccdc17	Rat	dibutyl phthalate	multiple interactions	EXP		6480464	[bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of CCDC17 more ...	CTD	PMID:23359474
Ccdc17	Rat	fipronil	increases expression	EXP		6480464	fipronil results in increased expression of CCDC17 mRNA	CTD	PMID:23962444
Ccdc17	Rat	fipronil	decreases expression	EXP		6480464	fipronil results in decreased expression of CCDC17 mRNA	CTD	PMID:34044035
Ccdc17	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of CCDC17 mRNA	CTD	PMID:33387578
Ccdc17	Rat	methapyrilene	increases methylation	ISO	RGD:1603565	6480464	Methapyrilene results in increased methylation of CCDC17 intron	CTD	PMID:30157460
Ccdc17	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of CCDC17 mRNA	CTD	PMID:30047161
Ccdc17	Rat	okadaic acid	decreases expression	ISO	RGD:1603565	6480464	Okadaic Acid results in decreased expression of CCDC17 mRNA	CTD	PMID:38832940
Ccdc17	Rat	ozone	multiple interactions	ISO	RGD:1603565	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of CCDC17 mRNA	CTD	PMID:35430440
Ccdc17	Rat	paracetamol	affects expression	ISO	RGD:408345396	6480464	Acetaminophen affects the expression of CCDC17 mRNA	CTD	PMID:17562736
Ccdc17	Rat	pentanal	decreases expression	ISO	RGD:1603565	6480464	pentanal results in decreased expression of CCDC17 mRNA	CTD	PMID:26079696
Ccdc17	Rat	permethrin	increases expression	ISO	RGD:1603565	6480464	Permethrin results in increased expression of CCDC17 mRNA	CTD	PMID:37047231
Ccdc17	Rat	pirinixic acid	multiple interactions	ISO	RGD:408345396	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Ccdc17	Rat	quercetin	increases expression	ISO	RGD:1603565	6480464	Quercetin results in increased expression of CCDC17 mRNA	CTD	PMID:21632981
Ccdc17	Rat	testosterone	increases expression	ISO	RGD:1603565	6480464	Testosterone results in increased expression of CCDC17 mRNA	CTD	PMID:33359661
Ccdc17	Rat	tetrachloromethane	decreases expression	ISO	RGD:408345396	6480464	Carbon Tetrachloride results in decreased expression of CCDC17 mRNA	CTD	PMID:31919559
Ccdc17	Rat	Theaflavin 3,3'-digallate	affects expression	ISO	RGD:1603565	6480464	theaflavin-3,3'-digallate affects the expression of CCDC17 mRNA	CTD	PMID:34925699
Ccdc17	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of CCDC17 mRNA	CTD	PMID:34492290
Ccdc17	Rat	titanium dioxide	affects expression	ISO	RGD:408345396	6480464	titanium dioxide affects the expression of CCDC17 mRNA	CTD	PMID:23557971
Ccdc17	Rat	titanium dioxide	increases expression	ISO	RGD:408345396	6480464	titanium dioxide results in increased expression of CCDC17 mRNA	CTD	PMID:35295148
Ccdc17	Rat	trichloroethene	increases methylation	EXP		6480464	Trichloroethylene results in increased methylation of CCDC17 gene	CTD	PMID:27618143
Ccdc17	Rat	triphenyl phosphate	affects expression	ISO	RGD:1603565	6480464	triphenyl phosphate affects the expression of CCDC17 mRNA	CTD	PMID:37042841
Ccdc17	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of CCDC17 mRNA	CTD	PMID:30589522
Ccdc17	Rat	triptonide	increases expression	ISO	RGD:408345396	6480464	triptonide results in increased expression of CCDC17 mRNA	CTD	PMID:33045310
Ccdc17	Rat	tris(2-butoxyethyl) phosphate	affects expression	ISO	RGD:1603565	6480464	tris(2-butoxyethyl) phosphate affects the expression of CCDC17 mRNA	CTD	PMID:29024780
Ccdc17	Rat	urethane	increases expression	ISO	RGD:1603565	6480464	Urethane results in increased expression of CCDC17 mRNA	CTD	PMID:28818685
Ccdc17	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of CCDC17 mRNA	CTD	PMID:23034163

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc17	Rat	protein binding	enables	ISO	RGD:1603565,UniProtKB:Q96LX7-5	1624291	UniProtKB:I6L9F6\|UniProtKB:O15049\|UniProtKB:O60333-2\|UniProtKB:O75934\|UniProtKB:O76024\|UniProtKB:P08779\|UniProtKB:P54252\|UniProtKB:P60891\|UniProtKB:Q3LI66\|UniProtKB:Q3LI72\|UniProtKB:Q86T90\|UniProtKB:Q8IUC2 PMID:32296183, PMID:32814053	RGD	PMID:32296183\|PMID:32814053
Ccdc17	Rat	protein binding	enables	ISO	RGD:1603565	1624291	UniProtKB:Q08379\|UniProtKB:Q15323\|UniProtKB:Q5JR59 PMID:25416956	RGD	PMID:25416956

#	Reference Title	Reference Citation
1.	Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer.	Kang BW, etal., Anticancer Res. 2016 Jul;36(7):3353-61.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:12477932	PMID:12947022

Ccdc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI		GRCr8
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,677,052 - 132,680,745 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,431,649 - 134,435,342 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,454,042 - 134,457,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,791 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	128,580,417 - 128,584,109 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

CCDC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	45,620,044 - 45,624,054 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	45,620,044 - 45,624,057 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,085,716 - 46,089,726 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	45,858,303 - 45,862,260 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	44,369,706 - 44,373,721 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,196,974 - 44,200,989 (-)	NCBI		HuRef
CHM1_1	1	46,202,867 - 46,206,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	45,492,399 - 45,496,409 (-)	NCBI		T2T-CHM13v2.0

Ccdc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,453,927 - 116,457,463 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,453,851 - 116,457,463 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,596,730 - 116,600,266 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.24	NCBI

Ccdc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,662,596 - 12,665,957 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,661,440 - 12,667,388 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	181,183,265 - 181,190,140 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	180,324,553 - 180,331,695 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	44,921,301 - 44,926,090 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,279,879 - 46,283,930 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,279,879 - 46,283,930 (-)	Ensembl	panpan1.1		panPan2

CCDC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,735,383 - 14,740,146 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,736,440 - 14,739,977 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,857,439 - 14,861,238 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,890,796 - 14,894,595 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	15	14,688,232 - 14,692,024 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,757,908 - 14,761,707 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,827,851 - 14,831,650 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,919,611 - 60,923,611 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	26,744,603 - 26,748,165 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	26,744,393 - 26,748,173 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	165,768,569 - 165,772,763 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,174,581 - 87,179,411 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,175,451 - 87,180,323 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	1,519,926 - 1,523,376 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	1,518,716 - 1,525,012 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ccdc17
19 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	145
Count of miRNA genes:	99
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000034464
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128071929	134724733	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	128033842	133011550	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

RH128376

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,056,344 - 130,056,526 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,445,463 - 135,445,644	NCBI	Rnor6.0
Rnor_5.0	5	139,241,644 - 139,241,825	UniSTS	Rnor5.0
RGSC_v3.4	5	136,883,114 - 136,883,295	UniSTS	RGSC3.4
Celera	5	128,583,778 - 128,583,959	UniSTS
RH 3.4 Map	5	838.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH144284

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,052,194 - 130,052,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,441,313 - 135,441,447	NCBI	Rnor6.0
Rnor_5.0	5	139,237,494 - 139,237,628	UniSTS	Rnor5.0
RGSC_v3.4	5	136,878,964 - 136,879,098	UniSTS	RGSC3.4
Celera	5	128,579,628 - 128,579,762	UniSTS
RH 3.4 Map	5	836.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA926261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC120450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI292365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF114603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK476945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO385240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO398762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034464 ⟹ ENSRNOP00000034089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,442,102 - 135,445,791 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090852 ⟹ ENSRNOP00000075436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,775 (+)	Ensembl

RefSeq Acc Id:

NM_001014067 ⟹ NP_001014089

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,647 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,052,984 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,442,102 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	RGD
Celera	5	128,580,417 - 128,584,109 (+)	RGD

Sequence:

show sequence

TGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCTGTAGGACGCTGGTGTCTTTAACAGATTCCATCCC
ATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGCGATTCTGCATTGGCGGACTGACTCCGGAGATTAT
GGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCTGGGCGACTGACACTTCCCAGA
CTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAATTAAAACGGCGCCTCCACAGC
GTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGGAGCGCGTGTTCAGGCGCTCCA
GCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTGAGGTCTACGTGCGCGGTGGAG
GCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCTGAGGAGGCTCTAATGGTGGAA
GCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAGGAGTGATAACTCCCTCCTCCC
TCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGGGTCTGGATCTCCACTTCCTAC
CAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTAATGACAAGCTTGGCCCGAGAT
GGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACCTGTGCCGAGGCTGCCTCCATC
ACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGGTGCTTAGTGGCCGTTGGCGCC
TCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATGGAGTACCACTTCCTCTGTCAG
GCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACCAATGATGTCCAGTTCATCTTC
CCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCACCAGTTTTGAAGGAAACACT
AATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTAGCCAACTTTATATAAAAAG
CCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238702 ⟹ XP_006238764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTATGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATGTTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAATGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTTCAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAATGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGGAAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGACCTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATGTGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATGGAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGAGCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGTGTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACGTCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTACAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGGCTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGAACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGA
TTCCAATGGAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAG
TACCCACCAATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTT
GAGTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTT
TCTTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238703 ⟹ XP_006238765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTATGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATGTTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAATGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTTCAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAATGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGGAAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGACCTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATGTGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATGGAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGAGCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGTGTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACGTCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTACAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGGCTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGAACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACG
CAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACCAATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATT
GCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTAC
AGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATA
AAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238704 ⟹ XP_006238766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGACTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATGCCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAATAGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGGGAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTACAAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGATCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGTAAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGACAGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAATCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACAGAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCTTCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGACATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAAAAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGAAACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCTGTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGCGATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCT
GGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAA
TTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGG
AGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTG
AGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCT
GAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAG
GAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGG
GTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTA
ATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACC
TGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGG
TGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATG
GAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACC
AATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTC
ACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAAC
TAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238705 ⟹ XP_006238767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTATGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATGTTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAATGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTTCAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAATGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGGAAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGACCTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATGTGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATGGAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGAGCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGTGTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACGTCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTACAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGGCTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGAACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCT
CTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAAT
AGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCG
GCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAA
ACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGT
GCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGTGGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTG
CCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTG
AGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACAAAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAG
AAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGG
TGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGC
AGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAG
TCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCA
CCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTT
TTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCA
TTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238706 ⟹ XP_006238768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTA
TGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGACTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATG
TTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATGCCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAA
TGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAATAGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTT
CAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGGGAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAA
TGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTACAAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGG
AAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGATCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGAC
CTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGTAAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATG
TGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGACAGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATG
GAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAATCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGA
GCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACAGAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGT
GTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCTTCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACG
TCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGACATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTA
CAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAAAAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGG
CTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGAAACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGT
CTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCTGTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTT
TTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGCGATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGA
ACAACGAGGCACCAAGGTAAGAACCGCCAGTTGCCGGGGTAGGCTGTCCAGCAAGCCGTATTCTCTGTTTTCATCTCCCCGCTCCCAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCA
CCAAATCTTCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTG
CAGGGAACACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAAT
AGTCTTGGAGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGG
TAGTGGAATTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTA
ATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTTGCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACC
TGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGTGTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGG
TGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCAGATGAATGAGATGCCCCAGGTAAGTGTAGAGGGTAGAGACTGGTTGCACCCCAAGATTCCAATG
GAGTACCACTTCCTCTGTCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACC
AATGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTC
ACCAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAAC
TAGCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_006238707 ⟹ XP_006238769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI

Sequence:

show sequence

CGTGGTTTTGGTTCTGTACCTGAGTCTATGTTAGGGCCACCAAGATGGCTGAATGAGTAAGCTATGTTCCTGAGTTTGAGGATTTCTGTTGGATTCCTGCCATCCGCATGATGAAAGCTGACAGATGA
CTCCCTTGGCATGATACCTTACCTTGGCATGCCTGTGCTAACACATACATGCACAAACTAAATGTTCAGATATGTTAAGGAAATTTGAAACTGGAGATTCTAGCAAAACACTTAACTTCCATTCCATG
CCCAAGGCCCTGGATCTACTACCTGAAACCACCAATGAGAGAGAACTTACCACTTAGAGTATAATGCTCATGTAATGAAAGAGAACTTACCACTTAGAGTATAATGCCCATGTAAACCACTAAGGAAT
AGGGGCTAGAATTGGAAGTCCTCCCATGGAGACTCACTGGTTGCTCTTTGAGTGATCGAGGGTTCAAATGCAACTAGTAATTGTCACCTAATGCCAGCCCCAGGGGATCCCTCTTCTAGCACCATTGG
GAACTGAATGCATTGGTGCCCAGGCATACATGTGGGCAAAATATCCAGACACCAAAAAAGAAAATGGATCTTTAAATCTGCAGTAACAATATGTTGTTGGGGCACTGGAGAGAATGCTCAACTTTTAC
AAAAGGTTTCAGAGTAGACTCTGAAACCTTTTGTAACTTGTTCCTCATACTTGGATGTTTGGGGAAAATACCTTAATGGCTCTGTCTTGCTGAGGAAAGAAGGGTGCTTTGAAAATTAGGTGCATGGA
TCTGTGTAGAGGAATTTTAATCCAGGAACCTGTTTGCTCTTGTAAGGGCTCACATCCAAAAGACCTGTCTATGTGATCTGGCTGGAATACAGATGCCCTGAGCACTCATCTTGAGTCCCAAACTATGT
AAGGTTAGTTTGTAGAAGGAAGCACCATGTTTGAAAGTGATGTCAAATTGAGGATTGAACAATGTGATGAATCAGAGAAAGATCTGACCGAATGAGTCAGAAATGGGCTAAGCCCAACTCATACTGAC
AGGAAACAAAGGCTATTTAAGAGCAGTGCGGGGAGAAGAGTCCATCTTTGAGTTCAGTAGAATGGAGTTCAGAGGCAATTTAGCCAAGCAGAGCATTTCAATGAGTAGCTGAGAGAAGCCAGTTTGAA
TCGGTCAGTTTGGAAAGGACTTTGAGACAGAACAGCTGAGTCAGCTGGCCAGCTTTGAGGAAGAGCTAGAGTGAGTTTCTTCAGTAAGCCTCAGAGGCTGAACCATTCTAAGCATAGATTCGCAGACA
GAAGCAGTAAGTCTAGGAGATGACAATTACATCAGGTGAATAAAAGTTGCTTTTACAAGTCGGTGTAAAGGTGAAGATAACTTGACCAGCAGGAAGCCTGCTTGACCTCCAAATAGTATCCTATCCCT
TCATCTGACAGACTGTACTTCCCCAACCCAGTTTTCATTACTGGGGCGGTTCAGATCATCCACGTCCCAGAATGGGGTTCCCATTGTGTGATGGGTTAATTCTGTAAAGGCTGAGTGTATGCAAAGAC
ATACTGCTAATATTAGATTCACTTTGTGCCAGAATATTCCCTACAGTGGAGAACAGCAGTGGTACAGATGACACTTGCATATCAGAGGCTCGTTAAGGAAGCTGCCTTTTCTATAGGAAGTGAAATAA
AAGCTGCTTGCTACACGTTTGGCCAAGCTCGCTGCAACTGGTGGAACAAACTTTCTCACCTGGGCTCCACCCAAACGGGGCAAGGCACATTGTCCTGGCCTGACTACACCTGTACTCGCTGCCCAGGA
AACTAGGGCACCTCCCCAAACATAAACATAAATTTGAAGGACTTGGAGATGTAGCAGAGTTGGTCTATTCTTTGTCTCTTTGCTCTCTTTTCTTTCCAGTCTACCTTTTCCCTTTTACCACATCCTCT
GTAGGACGCTGGTGTCTTTAACAGATTCCATCCCATGGCCGATTACTCTGGGAAGTCAGGACTTTTGCCCTGTGAGTCCTGTGATATGGTTTTCCGCTCCAGAGCTTTGTTGGCCAAACACACCAAGC
GATTCTGCATTGGCGGACTGACTCCGGAGGTAACACTTAAAACACAGCCTTCAGTAGCCATGGAACAACGAGGCACCAAGATTATGGCACAAGAACAGAGGCGTTCAGATCAGGAGGCCACCAAATCT
TCTCTAAAGAGACTGACAGAGGAGACGGAGTTGCTGAGACTGTCCCTACAGAAAATAGGTCCCTGGGCGACTGACACTTCCCAGACTGCAGGGAGCCCTGAGGAGAGGCTGCGAGACTTGCAGGGAAC
ACGAGCCAGACGCGTGGAGGAAACTGAAGCGCAAAGCCGAGCGCTGAAGCAACGCGGCGAAGAATTAAAACGGCGCCTCCACAGCGTAGCGGGACCCAAGGGAGGATTACCCCGCCCAATAGTCTTGG
AGCGCGAACTCAGAGAACTCAGGGAAGAGGCCAGCCGGACACGGGGAGCGCTGCAAACGTTAGGAGCGCGTGTTCAGGCGCTCCAGCCTCAGCCCGCCCACCAGCAGGACGCCAAAAGGGTAGTGGAA
TTCTGTTGCCTGCCCCTACGGTACAACCCGGAAACGCTTGCTGAAGAGATCCGGGTGCTACGTGAGGTCTACGTGCGCGGTGGAGGCCGGGACCCAGAAGTTCTGGACAAAATATTACAACTGCAAGT
GGAGGCGTCAGCACTGGAATTGCGGCGGTCGCAAAACCGCAAGGAAAAAGCAAGTGCCGCCTCTGAGGAGGCTCTAATGGTGGAAGCCGAAAACAGGATCCTGGAGGCAGAAATTCTGGCCTTGCAGA
AGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGTTCCAGGGATCTCTGGCGACACTTGAGTAGAAGGAGTGATAACTCCCTCCTCCCTCCACCAGTTGCACCCCCAATGCCACCAGTTACAAGTTCCACA
AAAGTCCAGGACTTCCACGGCACTTCAAAGGCTATAATTAATGGAACCATGACAAGAAACTTGGGTCTGGATCTCCACTTCCTACCAGCATCGAATGTTCTAGGTCCTGCACCCTATGATCCTGGGGC
TGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGAGGCTTCTTGGATTTGGGTGCAGCTAATGACAAGCTTGGCCCGAGATGGACAGGATACAGGAGGGGCCACAGCACTACCTCCAGCACTTT
GCTTGCCGCCACCTTCAGCTTCTGGACCTATAGGCAACTGTGCTATCCTCGCAAGCAGGCAACCTGTGCCGAGGCTGCCTCCATCACCACTGCTATCTTTGATCTGCAAACTACAGGCCTGGCAGGGT
GTTACATGGACACCACAACCAAAGGCTTGGGCCTCACTACTGCTATTTGACCAAAGTCTGAGGGTGCTTAGTGGCCGTTGGCGCCTCCCACTTCGGGTCCCTCCTACCACCAGCCTCAGCTTTGCCCA
GATGAATGAGATGCCCCAGGCCGGCCAAGCTGAGCTCTTTCTGAGGCTGGTAAACGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAATCCAGCAAGTGCCCATGAGTACCAGTACCCACCAA
TGATGTCCAGTTCATCTTCCCTGGAATCCAGTTTCTTCACCCACAGTTCTGGCATTGCTGACCCTCCACCTCCCACAGAAGAGACTTTTGTCAGTGTCGAGGATAAAGATGAGCACTTGAGTCCTCAC
CAGTTTTGAAGGAAACACTAATTTCTAGACCTGCAGCTTTTAAAATGGGGTCTTACAGCAGCAGCAAACATTTGATCCTTAAATACTGGGTGGCTACAAAGAACACTAAACCTGCTTTTCTTAAACTA
GCCAACTTTATATAAAAAGCCAACTAATTTTCTTCTGCATTTACTTTCCTTTTATAAAGCAGATCCAGGAATAAATGACCTCAAAATATTTAGTCAAA

hide sequence

RefSeq Acc Id:

XM_039110589 ⟹ XP_038966517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110590 ⟹ XP_038966518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110591 ⟹ XP_038966519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,289,252 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110592 ⟹ XP_038966520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,290,769 - 135,293,339 (+)	NCBI
mRatBN7.2	5	130,054,106 - 130,056,676 (+)	NCBI

RefSeq Acc Id:

XM_039110594 ⟹ XP_038966522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,612 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,054,949 (+)	NCBI

RefSeq Acc Id:

XM_063288238 ⟹ XP_063144308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI

RefSeq Acc Id:

XM_063288239 ⟹ XP_063144309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI

RefSeq Acc Id:

XM_063288240 ⟹ XP_063144310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,147 (+)	NCBI

RefSeq Acc Id:

XM_063288241 ⟹ XP_063144311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,147 (+)	NCBI

RefSeq Acc Id:

XR_005504522

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,993 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,339 (+)	NCBI

RefSeq Acc Id:

XR_005504525

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,292,085 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,421 (+)	NCBI

RefSeq Acc Id:

XR_005504526

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,601 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,054,938 (+)	NCBI

RefSeq Acc Id:

XR_005504527

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	135,288,799 - 135,291,801 (+)	NCBI
mRatBN7.2	5	130,051,158 - 130,055,138 (+)	NCBI


Protein RefSeqs	NP_001014089	(Get FASTA)	NCBI Sequence Viewer
	XP_006238764	(Get FASTA)	NCBI Sequence Viewer
	XP_006238765	(Get FASTA)	NCBI Sequence Viewer
	XP_006238766	(Get FASTA)	NCBI Sequence Viewer
	XP_006238767	(Get FASTA)	NCBI Sequence Viewer
	XP_006238768	(Get FASTA)	NCBI Sequence Viewer
	XP_006238769	(Get FASTA)	NCBI Sequence Viewer
	XP_038966517	(Get FASTA)	NCBI Sequence Viewer
	XP_038966518	(Get FASTA)	NCBI Sequence Viewer
	XP_038966519	(Get FASTA)	NCBI Sequence Viewer
	XP_038966520	(Get FASTA)	NCBI Sequence Viewer
	XP_038966522	(Get FASTA)	NCBI Sequence Viewer
	XP_063144308	(Get FASTA)	NCBI Sequence Viewer
	XP_063144309	(Get FASTA)	NCBI Sequence Viewer
	XP_063144310	(Get FASTA)	NCBI Sequence Viewer
	XP_063144311	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034089
	ENSRNOP00000034089.5
	ENSRNOP00000075436
	ENSRNOP00000075436.2

RefSeq Acc Id:

NP_001014089 ⟸ NM_001014067

- UniProtKB:

A0A0G2KAL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHS
VAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVE
AENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARD
GQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEGRDWLHPKIPMEYHFLCQ
AGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF

hide sequence

RefSeq Acc Id:	XP_006238767 ⟸ XM_006238705
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASCRGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTA GSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGR DPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPA SNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLP LRVPPTTSLSFAQMNEMPQMSSSSSLESSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238765 ⟸ XM_006238703
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSP WGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASG PIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLE SSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238764 ⟸ XM_006238702
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKVRTASC RGRLSSKPYSLFSSPRSQIMAQEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELRE EASRTRGALQTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSP WGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASG PIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEGRDWLHPKIPMEYHFLCQAGQAELFLRLVNARDTDAQTLAE INPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEETFVSVEDKDEHLSPHQF hide sequence

RefSeq Acc Id:	XP_006238769 ⟸ XM_006238707
- Peptide Label:	isoform X15
- UniProtKB:	A0A0G2KAL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEVTLKTQPSVAMEQRGTKIMAQEQ RRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRARRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELREEASRTRGALQTLGARVQALQPQPA HQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPEVLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLSLSPWGSRDLWRHLSRRSDNSLLPPPVA PPMPPVTSSTKVQDFHGTSKAIINGTMTRNLGLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGATALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLS LICKLQAWQGVTWTPQPKAWASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESSFFTHSSGIADPPPPTEETFVSV EDKDEHLSPHQF hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMQ6-F1-model_v2	AlphaFold	D3ZMQ6	1-593	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-40247	BioCyc
Ensembl Genes	ENSRNOG00000023216	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034464	ENTREZGENE
	ENSRNOT00000034464.5	UniProtKB/TrEMBL
	ENSRNOT00000090852	ENTREZGENE
	ENSRNOT00000090852.2	UniProtKB/TrEMBL
InterPro	CCDC17	UniProtKB/TrEMBL
NCBI Gene	500528	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 17	UniProtKB/TrEMBL
	PTHR33820	UniProtKB/TrEMBL
PhenoGen	Ccdc17	PhenoGen
RatGTEx	ENSRNOG00000023216	RatGTEx
UniProt	A0A0G2KAL0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMQ6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ccdc17	coiled-coil domain containing 17	LOC500528	similar to hypothetical protein FLJ33084	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC500528	similar to hypothetical protein FLJ33084			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar