Ccdc17 (coiled-coil domain containing 17) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ccdc17 (coiled-coil domain containing 17) Rattus norvegicus
Analyze
Symbol: Ccdc17
Name: coiled-coil domain containing 17
RGD ID: 1598211
Description: Orthologous to human CCDC17 (coiled-coil domain containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: coiled-coil domain-containing protein 17; LOC500528; similar to hypothetical protein FLJ33084
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.0 Ensembl5135,442,031 - 135,445,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,440,276 - 135,445,794 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05139,237,275 - 139,241,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,879,753 - 136,883,445 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5128,580,417 - 128,584,109 (+)NCBICelera
Cytogenetic Map5q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. RGD automated data pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12947022  


Genomics

Comparative Map Data
Ccdc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.0 Ensembl5135,442,031 - 135,445,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,440,276 - 135,445,794 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05139,237,275 - 139,241,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,879,753 - 136,883,445 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5128,580,417 - 128,584,109 (+)NCBICelera
Cytogenetic Map5q35NCBI
CCDC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl145,620,044 - 45,624,057 (-)EnsemblGRCh38hg38GRCh38
GRCh38145,620,044 - 45,624,787 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37146,085,716 - 46,089,726 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37146,085,716 - 46,090,424 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,858,303 - 45,862,260 (-)NCBINCBI36hg18NCBI36
Celera144,369,706 - 44,373,721 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef144,196,974 - 44,200,989 (-)NCBIHuRef
CHM1_1146,202,867 - 46,206,882 (-)NCBICHM1_1
Ccdc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,453,927 - 116,457,463 (+)NCBIGRCm39mm39
GRCm384116,596,730 - 116,600,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,596,654 - 116,600,266 (+)EnsemblGRCm38mm10GRCm38
MGSCv374116,269,335 - 116,272,871 (+)NCBIGRCm37mm9NCBIm37
MGSCv364116,094,662 - 116,098,198 (+)NCBImm8
Celera4115,330,380 - 115,333,916 (+)NCBICelera
Cytogenetic Map4D1NCBI
Ccdc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,662,596 - 12,665,957 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,661,440 - 12,667,388 (+)NCBIChiLan1.0ChiLan1.0
CCDC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1146,279,879 - 46,283,930 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,279,879 - 46,283,930 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0144,921,301 - 44,926,090 (-)NCBIMhudiblu_PPA_v0panPan3
CCDC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1514,736,440 - 14,739,977 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11514,735,383 - 14,740,146 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ccdc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647426,744,393 - 26,748,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16165,768,569 - 165,772,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCDC17
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12087,174,581 - 87,179,411 (+)NCBI
ChlSab1.1 Ensembl2087,175,451 - 87,180,323 (+)Ensembl
Ccdc17
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249061,518,716 - 1,525,012 (-)NCBI

Position Markers
RH128376  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.05135,445,463 - 135,445,644NCBIRnor6.0
Rnor_5.05139,241,644 - 139,241,825UniSTSRnor5.0
RGSC_v3.45136,883,114 - 136,883,295UniSTSRGSC3.4
Celera5128,583,778 - 128,583,959UniSTS
RH 3.4 Map5838.9UniSTS
Cytogenetic Map5q36UniSTS
RH144284  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.05135,441,313 - 135,441,447NCBIRnor6.0
Rnor_5.05139,237,494 - 139,237,628UniSTSRnor5.0
RGSC_v3.45136,878,964 - 136,879,098UniSTSRGSC3.4
Celera5128,579,628 - 128,579,762UniSTS
RH 3.4 Map5836.6UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531926122136640934Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535788756147487820Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)551418671147487820Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)556991667137729065Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)561086525149030144Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)571552569157225114Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)584963058173504662Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)591585539136585539Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)591884213136884213Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)593273130138273130Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)597921932149030144Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5100723739153577831Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5101265591141912026Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5102945579154732228Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5107119214152119214Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111278451156278451Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112279412157279412Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112279412157279412Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112279412157279412Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112279412157279412Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112279412157279412Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114140832159140832Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114140832159140832Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116767924161767924Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116767924161767924Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116767924161767924Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116767924161767924Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125455818149568944Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125455818157225114Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5128687766173687766Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5129038716139099229Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130531300145726262Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5131077716173707219Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132551937173707219Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133313668138454239Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133351969140120264Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133943857173707219Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133943857173707219Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5134197905173707219Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134502121149030144Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134502140157212422Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5134712342173707219Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5134712342173707219Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:99
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000034464
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 4 7 15 21 11
Low 43 53 41 12 41 8 11 74 20 20 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA926261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI292365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF114603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK476945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO385240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO398762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000034464   ⟹   ENSRNOP00000034089
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5135,442,102 - 135,445,791 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090852   ⟹   ENSRNOP00000075436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5135,442,031 - 135,445,775 (+)Ensembl
RefSeq Acc Id: NM_001014067   ⟹   NP_001014089
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,052,984 - 130,056,676 (+)NCBI
Rnor_6.05135,442,102 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
RGSC_v3.45136,879,753 - 136,883,445 (+)RGD
Celera5128,580,417 - 128,584,109 (+)RGD
Sequence:
RefSeq Acc Id: XM_006238702   ⟹   XP_006238764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238703   ⟹   XP_006238765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238704   ⟹   XP_006238766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238705   ⟹   XP_006238767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238706   ⟹   XP_006238768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238707   ⟹   XP_006238769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
Rnor_6.05135,440,276 - 135,445,794 (+)NCBI
Rnor_5.05139,237,275 - 139,241,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110589   ⟹   XP_038966517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
RefSeq Acc Id: XM_039110590   ⟹   XP_038966518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
RefSeq Acc Id: XM_039110591   ⟹   XP_038966519
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
RefSeq Acc Id: XM_039110592   ⟹   XP_038966520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,054,106 - 130,056,676 (+)NCBI
RefSeq Acc Id: XM_039110593   ⟹   XP_038966521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,189 (+)NCBI
RefSeq Acc Id: XM_039110594   ⟹   XP_038966522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,054,949 (+)NCBI
RefSeq Acc Id: XR_005504521
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,945 (+)NCBI
RefSeq Acc Id: XR_005504522
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,339 (+)NCBI
RefSeq Acc Id: XR_005504523
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,056,676 (+)NCBI
RefSeq Acc Id: XR_005504524
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,945 (+)NCBI
RefSeq Acc Id: XR_005504525
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,421 (+)NCBI
RefSeq Acc Id: XR_005504526
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,054,938 (+)NCBI
RefSeq Acc Id: XR_005504527
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25130,051,158 - 130,055,138 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001014089   ⟸   NM_001014067
- UniProtKB: D3ZMQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238767   ⟸   XM_006238705
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006238765   ⟸   XM_006238703
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006238764   ⟸   XM_006238702
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006238769   ⟸   XM_006238707
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006238768   ⟸   XM_006238706
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006238766   ⟸   XM_006238704
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000075436   ⟸   ENSRNOT00000090852
RefSeq Acc Id: ENSRNOP00000034089   ⟸   ENSRNOT00000034464
RefSeq Acc Id: XP_038966517   ⟸   XM_039110589
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966518   ⟸   XM_039110590
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038966519   ⟸   XM_039110591
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038966521   ⟸   XM_039110593
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038966522   ⟸   XM_039110594
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038966520   ⟸   XM_039110592
- Peptide Label: isoform X9

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 139241699 139241700 G A snv ACI/EurMcwi (MCW), DOB/Oda (KyushuU), FHL/EurMcwi (MCW), SBN/Ygl (MCW), MHS/Gib (KNAW), MR/N (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), SBN/Ygl (KNAW), F344/NRrrc (Illumina) (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), GK/Ox (KNAW), MNS/Gib (KNAW), WN/N (KNAW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), FHH/EurMcwi (MCW)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 135445518 135445519 G A snv ACI/EurMcwi (MCW), SBN/Ygl (RGD), FHL/EurMcwi (MCW), SBN/Ygl (MCW), ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), MR/N (MCW), WN/N (MCW), FHL/EurMcwi (RGD), ACI/EurMcwi (RGD), F344/NCrl (RGD), FHH/EurMcwi (RGD), GK/Ox (RGD), MHS/Gib (RGD), MNS/Gib (RGD), FHH/EurMcwi (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 136883169 136883170 G A snv FHH/EurMcwi (MDC), DA/BklArbNsi (ICAHN), BUF/N (KNAW), F344/NRrrc (KNAW), MR/N (KNAW), WN/N (KNAW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (ICL), F344/NCrl (ICL), FHH/EurMcwi (ICL), FHL/EurMcwi (ICL), GK/Ox (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBN/Ygl (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich), F344/NHsd (ICAHN), ACI/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598211 AgrOrtholog
Ensembl Genes ENSRNOG00000023216 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000034089 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075436 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034464 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000090852 UniProtKB/TrEMBL
InterPro CCDC17 UniProtKB/TrEMBL
KEGG Report rno:500528 UniProtKB/TrEMBL
NCBI Gene 500528 ENTREZGENE
PANTHER PTHR33820 UniProtKB/TrEMBL
PhenoGen Ccdc17 PhenoGen
UniProt A0A0G2KAL0_RAT UniProtKB/TrEMBL
  D3ZMQ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ccdc17  coiled-coil domain containing 17  LOC500528  similar to hypothetical protein FLJ33084  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC500528  similar to hypothetical protein FLJ33084      Symbol and Name status set to provisional 70820 PROVISIONAL