CCDC17 (coiled-coil domain containing 17)

Gene: CCDC17 (coiled-coil domain containing 17) Chlorocebus sabaeus

Analyze

Symbol:

CCDC17

Name:

coiled-coil domain containing 17

RGD ID:

18404726

Description:

ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); colorectal adenocarcinoma (ortholog); developmental and epileptic encephalopathy (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 17

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,174,581 - 87,179,411 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,175,451 - 87,180,323 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

colorectal adenocarcinoma (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CCDC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,174,581 - 87,179,411 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,175,451 - 87,180,323 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CCDC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	45,620,044 - 45,624,054 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	45,620,044 - 45,624,057 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,085,716 - 46,089,726 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	45,858,303 - 45,862,260 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	44,369,706 - 44,373,721 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,196,974 - 44,200,989 (-)	NCBI		HuRef
CHM1_1	1	46,202,867 - 46,206,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	45,492,399 - 45,496,409 (-)	NCBI		T2T-CHM13v2.0

Ccdc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,453,927 - 116,457,463 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,453,851 - 116,457,463 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,596,730 - 116,600,266 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,596,654 - 116,600,266 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,269,335 - 116,272,871 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,094,662 - 116,098,198 (+)	NCBI		MGSCv36	mm8
Celera	4	115,330,380 - 115,333,916 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.24	NCBI

Ccdc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,288,799 - 135,293,339 (+)	NCBI		GRCr8
mRatBN7.2	5	130,051,158 - 130,056,676 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,045,938 - 130,056,673 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,677,052 - 132,680,745 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,431,649 - 134,435,342 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,454,042 - 134,457,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,440,276 - 135,445,794 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,442,031 - 135,445,791 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,237,275 - 139,241,975 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,879,753 - 136,883,445 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	128,580,417 - 128,584,109 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

Ccdc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,662,596 - 12,665,957 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,661,440 - 12,667,388 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	181,183,265 - 181,190,140 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	180,324,553 - 180,331,695 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	44,921,301 - 44,926,090 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,279,879 - 46,283,930 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,279,879 - 46,283,930 (-)	Ensembl	panpan1.1		panPan2

CCDC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,735,383 - 14,740,146 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,736,440 - 14,739,977 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,857,439 - 14,861,238 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,890,796 - 14,894,595 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	15	14,688,232 - 14,692,024 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,757,908 - 14,761,707 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,827,851 - 14,831,650 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,919,611 - 60,923,611 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	26,744,603 - 26,748,165 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	26,744,393 - 26,748,173 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	165,768,569 - 165,772,763 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Ccdc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	1,519,926 - 1,523,376 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	1,518,716 - 1,525,012 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	36	18	60
Below cutoff		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007978942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037998965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037998974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000017314 ⟹ ENSCSAP00000016795

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	87,175,451 - 87,180,323 (+)	Ensembl

RefSeq Acc Id:

XM_007978942 ⟹ XP_007977133

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	87,175,824 - 87,178,978 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	29,790,678 - 29,795,088 (-)	NCBI

Sequence:

show sequence

TCTTTCCCAAACCTGTAGATCATACTTGGGACAGATTCTGCCCACACAGAGATCGCGGATCGCT
GTTACCTCCAGGTGCAGTGGCTGCGGCTATCCCTACAGGAAATGCGGCCCTGGATAACAGAGGT
CCCCAGGGTGCTCGCGGGGTCCTGGACACGTTCCGAGGCGCGCCCTCAGAGTCCCATGTCCGAG
GCGGTGGGAAGCCCCAGCGAGCGGCTGCGAGCGCTGTTCAGGACTCGCGCGAGGCGCGTGGCGG
AGACGGAAGCGCAGAGCTGGGCCCTGCAGCGACGCGGCCAGGGTGAAGGAGATGGGGGGCGGGG
ACCAAGGACCTCCTCTGCCCTTACCCTTCGGCTTAAGCTTGCTCGCGCCAGTTCTGACTCGGCC
CGCATTCCCTCAGAACTGAGCCGGCGCCTCCAAGGTGTGGCCTGTACGCGGGGCGGGATGTCCC
GCCTCTTCGGCCTGGAGCAGGAGATTCGAGAACTACGAACTGAGGCCGGTAGGACGCGGGGAGC
TCTAGAGGTGTTGGAAGCCCGCATTCAGGAGCTGCAGGCGGAGCCAGGGAACCCGCTGAGCTCC
GGGCGAGAGGCAAAACTCTATTCTCCAGTGCTAAAGGCCAACCCGGGAACTCTGGCTGCCAAAA
TCGGGGCCCTGCGGGAGGCCTACATTCGAGACGGAGGCCGGGACCCCGGTGTGCTGGGCCAGAT
ATGGCAGTTGCAGGTGGAGGCGTCTGCACTGGAGCTGCAGCGGTCGCAGACCCGCAGAGGAAGG
GCAGGTGCCACCTCAGGGGAGCTTCCAGTAGTGGAGGCTGAAAACCGGCGCCTGGAGGCAGAAA
TCTTGGCCTTGCAAATGCAGCGGAGTCAGGCAGCCTTGGGGCCCCGGGATCTGCCACTCCTGTG
GGGTGCCAGCCTACAACCGAAGGGGAGGAGAGATCCCCCACTCCTCTCACCGCCAGTGGCACCA
CCACTGCCACCACTGCCACCACTTCCAGGCTTCATGGAGCCACAGCTTCCTGGAACAATGACCA
GAAACCTGGGCCTGGACCCACACTTCCTCCTACCCACATCGGACGTGCTGGGCCCTGCACCCTA
CGATCCTGGGGCTGGCCTGGTCATTTTCTATGATTTCCTGCGGGGCCTTGAGGCTTCCTGGATT
TGGGTGCAACTAAGGACTGGCTTGGCACGCGATGGACAGGATACAGGAGGGACCACAGCATTGC
CCCCAGCCATTTGCCTGCCCCCACCTCCTGCTCCCGGGCCCATGGGCAACTGTGCTATCCTTGC
CAGCAGGCAGCCTGTGCCCAGACTGCCACCCTCACCATCAGTATCTTTGGTCTGTGAGCTGCAG
GTCTGGCAGGGCCTGGCATGGGCTAGGGCACCACAGCCAAAGGCTTGGGTCTCACTTGGGCTAT
TTGACCAAGATCAGCGGGTGCTAAGCGGCCGCTGGCGCCTCCCACTTCGGGCCCTTCCTCTGGA
CCCCAGCCTTAGCCTCAGGCAGCTGAATGGGATTCCTCAGGTGAGTGTGGTGGGTGGGGATTGG
GCATACAGCAAGGTACAAGTGCAATACCATTTCATCTCTCCTCAGGCAGGTCAGGCTGAGCTCT
TTCTGCGGCTGGTGAATGCAAGAGATGCAGCTGTCCAGACACTGGCAGAGATCAATCCAGCAAG
TGCCCATGAGTACCAGTACCCACCTCCGGTGAGGGCCCAGCTGCAGCTAGGGACACCACAGCTA
CCCATACCAGTGTGGCTAATAGCCAGCCTTTATTGACCACTGTATGCCGGTGTCGAGCACATCT
TCATCAGAAGCCAACTTCCTCACCCCCACAGCTGGCTTTGCTGATCCCCCACCTCGTACAGAAG
AGCCCCTCA

hide sequence

RefSeq Acc Id:

XM_037998965 ⟹ XP_037854893

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI

RefSeq Acc Id:

XM_037998974 ⟹ XP_037854902

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	29,790,196 - 29,795,088 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007977133	(Get FASTA)	NCBI Sequence Viewer
	XP_037854893	(Get FASTA)	NCBI Sequence Viewer
	XP_037854902	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016795.1

RefSeq Acc Id:	XP_007977133 ⟸ XM_007978942
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCSAP00000016795 ⟸ ENSCSAT00000017314

RefSeq Acc Id:	XP_037854902 ⟸ XM_037998974
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S7F6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037854893 ⟸ XM_037998965
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S7F6 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001219	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017314.1	UniProtKB/TrEMBL
InterPro	CCDC17	UniProtKB/TrEMBL
NCBI Gene	CCDC17	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 17	UniProtKB/TrEMBL
	PTHR33820	UniProtKB/TrEMBL
UniProt	A0A0D9S7F6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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