Gene: Prpf38a (pre-mRNA processing factor 38A) Rattus norvegicus
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Symbol: Prpf38a
Name: pre-mRNA processing factor 38A
Description: INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN nuclear membrane (ortholog); nucleus (ortholog); precatalytic spliceosome (ortholog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC298374; pre-mRNA-splicing factor 38A; PRP38 pre-mRNA processing factor 38 (yeast) domain containing A; PRP38 pre-mRNA processing factor 38 domain containing A; RGD1311129; similar to hypothetical protein FLJ14936
Orthologs:
Homo sapiens (human) : PRPF38A (pre-mRNA processing factor 38A)  HGNC  Alliance
Mus musculus (house mouse) : Prpf38a (PRP38 pre-mRNA processing factor 38 (yeast) domain containing A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prpf38a (pre-mRNA processing factor 38A)
Pan paniscus (bonobo/pygmy chimpanzee) : PRPF38A (pre-mRNA processing factor 38A)
Canis lupus familiaris (dog) : PRPF38A (pre-mRNA processing factor 38A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prpf38a (pre-mRNA processing factor 38A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05128,174,835 - 128,186,532 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05132,015,346 - 132,027,043 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,866,098 - 129,877,797 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15129,871,737 - 129,883,002 (-)NCBI
Celera5122,047,108 - 122,058,809 (-)NCBICelera
Cytogenetic Map5q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prpf38a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311129
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-11-20
Status: ACTIVE