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Gene: Col16a1 (collagen type XVI alpha 1 chain) Rattus norvegicus

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Symbol:

Col16a1

Name:

collagen type XVI alpha 1 chain

RGD ID:

1310982

Description:

Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion mediated by integrin; integrin activation; and positive regulation of focal adhesion assembly. Predicted to act upstream of or within cellular response to amino acid stimulus. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

collagen alpha-1(XVI) chain; collagen, type XVI, alpha 1; LOC366474; MGC109452; procollagen, type XVI, alpha 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	COL16A1 (collagen type XVI alpha 1 chain)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Col16a1 (collagen, type XVI, alpha 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Col16a1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	COL16A1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	COL16A1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Col16a1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	COL16A1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	COL16A1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Col16a1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Col16a1 (collagen type XVI alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	COL16A1 (collagen type XVI alpha 1 chain)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Col16a1 (collagen, type XVI, alpha 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	col16a1 (collagen, type XVI, alpha 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	col16a1 (collagen, type XVI, alpha 1)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	col16a1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,672,559 - 147,727,007 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	147,672,601 - 147,727,011 (+)	Ensembl				GRCr8
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,388,426 - 142,442,825 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	145,090,038 - 145,143,416 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	146,859,856 - 146,913,228 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	146,857,442 - 146,911,004 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,257,030 - 148,311,645 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,257,642 - 148,311,645 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	149,072,905 - 149,126,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	140,857,544 - 140,910,551 (+)	NCBI		Celera
RGSC_v3.1	5	149,069,555 - 149,136,389 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antimycin A (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

entinostat (ISO)

ethanol (ISO)

fenpyroximate (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

graphite (EXP)

GW 4064 (ISO)

hydrogen peroxide (ISO)

L-methionine (ISO)

lead diacetate (EXP)

methapyrilene (ISO)

methimazole (EXP)

methylmercury chloride (EXP)

methylseleninic acid (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propanal (ISO)

rotenone (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA,ISO)

cell adhesion mediated by integrin (IEA,ISO)

cellular response to amino acid stimulus (IEA,ISO)

integrin activation (IEA,ISO)

positive regulation of focal adhesion assembly (IEA,ISO)

Cellular Component

collagen trimer (IEA)

Molecular Function

integrin binding (IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	New Altered Non-Fibrillar Collagens in Human Dilated Cardiomyopathy: Role in the Remodeling Process.	Gil-Cayuela C, etal., PLoS One. 2016 Dec 9;11(12):e0168130. doi: 10.1371/journal.pone.0168130. eCollection 2016.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16754661	PMID:20548288	PMID:24466237	PMID:27068509

Genomics

Comparative Map Data

Col16a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,672,559 - 147,727,007 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	147,672,601 - 147,727,011 (+)	Ensembl				GRCr8
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,388,426 - 142,442,825 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	145,090,038 - 145,143,416 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	146,859,856 - 146,913,228 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	146,857,442 - 146,911,004 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,257,030 - 148,311,645 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,257,642 - 148,311,645 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	149,072,905 - 149,126,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	140,857,544 - 140,910,551 (+)	NCBI		Celera
RGSC_v3.1	5	149,069,555 - 149,136,389 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

COL16A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	31,652,263 - 31,704,017 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	31,652,260 - 31,704,319 (-)	Ensembl			hg38	GRCh38
GRCh37	1	32,117,864 - 32,169,618 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	31,890,435 - 31,942,355 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	31,786,940 - 31,838,742	NCBI
Celera	1	30,387,074 - 30,438,996 (-)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	30,235,356 - 30,287,265 (-)	NCBI		HuRef
CHM1_1	1	32,233,644 - 32,285,563 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	31,509,912 - 31,561,650 (-)	NCBI		T2T-CHM13v2.0

Col16a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,941,638 - 129,993,070 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,941,633 - 129,993,076 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	130,047,817 - 130,099,277 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	130,047,840 - 130,099,283 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	129,725,084 - 129,776,521 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	129,550,192 - 129,601,579 (+)	NCBI		MGSCv36	mm8
Celera	4	128,382,547 - 128,433,748 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.43	NCBI

Col16a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	10,062,562 - 10,103,064 (-)	Ensembl
ChiLan1.0	NW_004955452	10,062,409 - 10,111,778 (-)	NCBI	ChiLan1.0	ChiLan1.0

COL16A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	195,125,387 - 195,177,191 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	194,247,339 - 194,298,860 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	30,936,368 - 30,987,855 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	31,953,426 - 32,005,429 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

COL16A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	69,410,283 - 69,459,382 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	69,410,155 - 69,459,335 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,989,263 - 66,038,324 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,975,306 - 70,024,416 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,975,330 - 70,024,420 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	66,811,227 - 66,860,204 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	67,807,606 - 67,856,617 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	68,806,911 - 68,855,998 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Col16a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,944,247 - 48,992,572 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,769,114 - 14,817,365 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,769,029 - 14,817,342 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL16A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	88,177,816 - 88,242,747 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	88,177,798 - 88,243,718 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	81,892,912 - 81,907,259 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL16A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	101,166,710 - 101,218,115 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	15,473,077 - 15,524,662 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col16a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	14,895,811 - 14,942,644 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Col16a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	28,052,649 - 28,105,586 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Col16a1
545 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	47
Count of miRNA genes:	36
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000067663
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH142892

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	142,442,544 - 142,442,660 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	148,311,365 - 148,311,480	NCBI	Rnor6.0
Rnor_5.0	5	152,029,823 - 152,029,938	UniSTS	Rnor5.0
RGSC_v3.4	5	149,126,070 - 149,126,185	UniSTS	RGSC3.4
Celera	5	140,910,271 - 140,910,386	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	65	59	6	329	165	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001302967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067663 ⟹ ENSRNOP00000058947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	147,672,601 - 147,727,011 (+)	Ensembl
mRatBN7.2 Ensembl	5	142,388,913 - 142,442,825 (+)	Ensembl
Rnor_6.0 Ensembl	5	148,257,642 - 148,311,645 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100626 ⟹ ENSRNOP00000089698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	147,673,107 - 147,727,006 (+)	Ensembl
mRatBN7.2 Ensembl	5	142,388,426 - 142,442,825 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114962 ⟹ ENSRNOP00000077174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	147,673,096 - 147,727,007 (+)	Ensembl
mRatBN7.2 Ensembl	5	142,388,913 - 142,442,825 (+)	Ensembl

RefSeq Acc Id:

NM_001302967 ⟹ NP_001289896

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,673,096 - 147,727,007 (+)	NCBI
mRatBN7.2	5	142,388,913 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,593 - 148,311,645 (+)	NCBI
Celera	5	140,857,544 - 140,910,551 (+)	NCBI

Sequence:

show sequence

GAGCGCCCGGCAGTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGAC
GCGGAAAAGCTGGGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGA
CCCCTGGCCCTGCTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTC
CCCGGGCCGTTGGTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCT
CCCGGCCTATGGGTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGTGAGCGCT
GCCCAACTTCACAGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCAACATGAC
TGGCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGATCCGCAAC
CCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGACGAGTGT
TCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAACACACCTT
CCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTCCTTGGAA
GTCAACAGCCAGGAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTTGTGTCCT
GCATCTTCCCAGTGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCGTGGCAAG
CCGTGTGGCCTCTGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCCCCGGCAG
CCCATCCGGCCTGGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCGGTTTCAT
TTGACCTTCAGCAGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCTGCTGTGA
GATCTTACCGGGAGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAGTAATGAG
CTCATTGAGATCAATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTGGAAGAAC
CTCATAACAGCAAGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAAGGGGGAC
AAAGGCCCACCAGGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCGGGAGAGC
AATGTCACACTTGGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACTGGACCAT
CAGGCCCCAAGGGAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAGATGGCCC
ACTTCAGTGTGCAGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACCCTCAGGA
CTCCCGGGCCCAACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTCAAAGGAC
TGCCGGGAAAGCCGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCAAAGGGCA
GAAAGGAGACCCTGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCCTGGCCTA
CCCGGACCACCTGGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCAGGCCCTA
AAGGAGCAAAGGGCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGGGGAAGCC
AGGAGTACCCGGGACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCTGCCCGAA
GGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGTGATCCTG
CTCCAGCCAGGGAGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAGGCATCCA
AGGAATGAAAGGAGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGCCCAGCAT
CTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCTGGCCTTC
CGGGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTGGCGATGC
TGGGCCGGCTGGAGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGGGGCAAAG
GGGGAGCCGTGTGAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAAGTGGTTC
ACCTGCCCGGCCCAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGCCTGGGAA
GCAGGGTAGAGCTGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCCAGGAGAC
CCTGGAACGCCAGGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGGGGTCCTG
CAGGACCAAAAGGAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGGCGTTGAC
AGATGTATCGGGACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGGTGTGGGT
CGGCCCGGTAAACCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTGAAGGGCA
CTCAGGGAGAGCCTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTGGAACCCC
AGGTTTGCCTGGCATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGGCGAACAC
GGTGCCCAGGGACCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGTGCTAGTA
TCTCTGGGCCTCCGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGTGTTCCTG
TCCTTCTCGAGGAGAGCCCATCTTCTCCGGCATGCCGGGTGCTCCGGGACTGTGGATGGGCAGC
TCCTCGCAGCCGGGCCCGCAGGGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCCGGAATGC
CTGGATTGCAGGGAGTGCCTGGACACAACGGTTTGCCAGGACAGCCTGGGCTCACTGCCGAGCT
GGGATCCTTACCCATCGAGCAGCATCTCCTCAAGAGCATCTGTGGTGACTGTGCCCAGGGCCAG
GCAGCCCATTCAGCCTCCCTTCTGGTGAAAGGAGAAAAGGGGGACCAGGGTGTCCCTGGTGTGC
CGGGTTTCAACGACTGTGCCAGGTGCTTCATAGAGAGGGAGCGCCCGAGAGCTGAGGAGGCCAG
GGGAGACAACAGTGAGGGAGAACCTGGCTGTCCTGGGAGCCCTGGCCTGCCTGGTCCTCCAGGG
ATGCCTGGCCAAAGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCTCCTGGTCTTCCAGGCC
CTGTTGGTCTTCAAGGGGAGCGAGGCCCCACAGGCCTGACTGGAGACAAGGGAGAACCGGGTCC
CCCAGGACAGCCTGGCTACCCGGGTGCCATGGGTCCCCCAGGACTGCCTGGCATCAAGGGAGAA
AGAGGATATGCTGGCCCTGCGGGAGAGAAGGGGGAGTCGGGCCCACCAGGATCTGAAGGCCTTC
CAGGTCCCCAAGGTCCAGCGGGTCCCCGAGGAGAGCGAGGTCCCCAAGGGAGCTCGGGAGAGAA
GGGTGATCAGGGATTTCAAGGCCAGCCAGGTTTCCCTGGCCCACCGGGTCCCCCGGGATTCCCA
GGCAAAGCTGGAGCTCCTGGCCCACCTGGCCCCCAAGCAGAGAAGGGCAGTGAAGGGATGCGAG
GTCCCTCAGGCTTGCCTGGTTCCCCTGGACCACCAGGCCCTCCTGGGATTCAGGGCCCTGCTGG
ACTGGATGGACTGGATGGGAAAGACGGCAAACCGGGCCTGAGGGGGGACCCAGGTCCCGCTGGC
CCTCCTGGACTCATGGGACCTCCAGGTTTCAAAGGGAAAACAGGGCATCCTGGTCTCCCTGGAC
CTAAGGGTGACTGTGGAAAACCAGGTCCTCCTGGCAGCAGTGGCCGGCCAGGTGCAGAGGGTGA
GCCCGGTGCCATGGGACCCCAGGGACGACCAGGACCTCCAGGGCATCTTGGGCCACAGGGGCCT
CCAGGCCAGCCAGGTCCACCTGGGCTCTCCACCATGGGCCTGAAAGGAGATCGGGGATCCCCTG
GAGAAAGGGGCTTGGCCGGCCTCCCAGGCCAGCCTGGCACACCCGGACACCCCGGCCCTCCGGG
TGAACCTGGTTCGGATGGTGCAGCTGGCAAAGAGGGACCTCCAGGAAAGCAGGGACTCTATGGA
CCCCCCGGCCCAAAGGGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAAAAGGGAA
GATCTGGCATGCCTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCACCGGGTCC
TGCGGGAGAGAGAGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCCTGGTTTG
CCAGGCTCTATGGGAGACATGGTGAATTATGATGATATCAAGAGGTTTATCAGACAAGAGATCA
TTAAACTGTTTGATGAGAGGATGGCTTACTACACCTCTAGGATGCAGTTCCCCATGGAGGTGGC
AGCAGCTCCAGGCCGGCCAGGGCCTCCAGGGAAGGATGGCGCCCCAGGGCGGCCAGGTGCTCCA
GGGTCACCTGGGCTCCCTGGTCAGATAGGCCGAGAAGGACGCCAGGGTTTGCCAGGAATGAGAG
GATTGCCTGGTACCAAAGGTGATAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAAATGGTCT
CCCTGGCCCTCCAGGTCCTCAAGGGCCTCCAGGTTATGGCAAGATGGGTGCAACCGGGCCAATG
GGCCAGCAAGGCATTCCTGGGATCCCTGGCCCCCCGGGGCCCATGGGCCAGCCAGGGAAGGCAG
GCCACTGCAACCCCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGTACCCGCCCATAAA
AAGCATGAAGGGGCCTTTTGGTTGAAGCTCCTGCTCGCACTGAGAGGAAGGACTCTACTAGGAA
TAAATGGCCAAAGCTTACAGGACTCTGACAGGTTGTGAATGTTTGTACTATTCTTGTGTTTGTT
GTTTTGTTGTTGTTGCTGTTAATATTTTTTTTAACAATAAAGAAAGAAAACTATCTGTAACCCC
ACTTCCATGGGGTTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_006238946 ⟹ XP_006239008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,033 - 148,311,645 (+)	NCBI
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI

Sequence:

show sequence

TAATTTAGCACAGGGTTGGGGAGTGGTGTTCTATCCCCTCCTCCCAGTGCAGACAGAGGTTCTA
CAGCCTAGGAATGCTAGGCCCAGGCACTGGAAAAAGCTGACCACTGAGGCTTGGAGCGCCCGGC
AGTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGACGCGGAAAAGCT
GGGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCT
GCTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTT
GGTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATG
GGTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGGGCCAACTCTGTCCCAGGT
GAGCGCTGCCCAACTTCACAGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCA
ACATGACTGGCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGAT
CCGCAACCCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGA
CGAGTGTTCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAAC
ACACCTTCCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTC
CTTGGAAGTCAACAGCCAGGAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTT
GTGTCCTGCATCTTCCCAGTGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCG
TGGCAAGCCGTGTGGCCTCTGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCC
CCGGCAGCCCATCCGGCCTGGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCG
GTTTCATTTGACCTTCAGCAGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCT
GCTGTGAGATCTTACCGGGAGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAG
TAATGAGCTCATTGAGATCAATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTG
GAAGAACCTCATAACAGCAAGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAA
GGGGGACAAAGGCCCACCAGGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCG
GGAGAGCAATGTCACACTTGGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACT
GGACCATCAGGCCCCAAGGGAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAG
ATGGCCCACTTCAGTGTGCAGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACC
CTCAGGACTCCCGGGCCCAACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTC
AAAGGACTGCCGGGAAAGCCGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCA
AAGGGCAGAAAGGAGACCCTGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCC
TGGCCTACCCGGACCACCTGGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCA
GGCCCTAAAGGAGCAAAGGGCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGG
GGAAGCCAGGAGTACCCGGGACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCT
GCCCGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGT
GATCCTGCTCCAGCCAGGGAGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAG
GCATCCAAGGAATGAAAGGAGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGC
CCAGCATCTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCT
GGCCTTCCGGGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTG
GCGATGCTGGGCCGGCTGGAGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGG
GGCAAAGGGGGAGCCGTGTGAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAA
GTGGTTCACCTGCCCGGCCCAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGC
CTGGGAAGCAGGGTAGAGCTGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCC
AGGAGACCCTGGAACGCCAGGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGG
GGTCCTGCAGGACCAAAAGGAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGG
CGTTGACAGATGTATCGGGACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGG
TGTGGGTCGGCCCGGTAAACCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTG
AAGGGCACTCAGGGAGAGCCTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTG
GAACCCCAGGTTTGCCTGGCATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGG
CGAACACGGTGCCCAGGGACCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGT
GCTAGTATCTCTGGGCCTCCGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGT
GTTCCTGTCCTTCTCGAGGAGAGCCCATCTTCTCCGGCATGCCGGGTGCTCCGGGACTGTGGAT
GGGCAGCTCCTCGCAGCCGGGCCCGCAGGGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCC
GGAATGCCTGGATTGCAGGGAGTGCCTGGACACAACGGTTTGCCAGGACAGCCTGGGCTCACTG
CCGAGCTGGGATCCTTACCCATCGAGCAGCATCTCCTCAAGAGCATCTGTGGTGACTGTGCCCA
GGGCCAGGCAGCCCATTCAGCCTCCCTTCTGGTGAAAGGAGAAAAGGGGGACCAGGGTGTCCCT
GGTGTGCCGGGTTTCAACGACTGTGCCAGGTGCTTCATAGAGAGGGAGCGCCCGAGAGCTGAGG
AGGCCAGGGGAGACAACAGTGAGGGAGAACCTGGCTGTCCTGGGAGCCCTGGCCTGCCTGGTCC
TCCAGGGATGCCTGGCCAAAGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCTCCTGGTCTT
CCAGGCCCTGTTGGCCCCCCAGGTTTTCCTGGTGCTGTTGGCTCCCCCGGATTGCCTGGTCTTC
AAGGGGAGCGAGGCCCCACAGGCCTGACTGGAGACAAGGGAGAACCGGGTCCCCCAGGACAGCC
TGGCTACCCGGGTGCCATGGGTCCCCCAGGACTGCCTGGCATCAAGGGAGAAAGAGGATATGCT
GGCCCTGCGGGAGAGAAGGGGGAGTCGGGCCCACCAGGATCTGAAGGCCTTCCAGGTCCCCAAG
GTCCAGCGGGTCCCCGAGGAGAGCGAGGTCCCCAAGGGAGCTCGGGAGAGAAGGGTGATCAGGG
ATTTCAAGGCCAGCCAGGTTTCCCTGGCCCACCGGGTCCCCCGGGATTCCCAGGCAAAGCTGGA
GCTCCTGGCCCACCTGGCCCCCAAGCAGAGAAGGGCAGTGAAGGGATGCGAGGTCCCTCAGGCT
TGCCTGGTTCCCCTGGACCACCAGGCCCTCCTGGGATTCAGGGCCCTGCTGGACTGGATGGACT
GGATGGGAAAGACGGCAAACCGGGCCTGAGGGGGGACCCAGGTCCCGCTGGCCCTCCTGGACTC
ATGGGACCTCCAGGTTTCAAAGGGAAAACAGGGCATCCTGGTCTCCCTGGACCTAAGGGTGACT
GTGGAAAACCAGGTCCTCCTGGCAGCAGTGGCCGGCCAGGTGCAGAGGGTGAGCCCGGTGCCAT
GGGACCCCAGGGACGACCAGGACCTCCAGGGCATCTTGGGCCACAGGGGCCTCCAGGCCAGCCA
GGTCCACCTGGGCTCTCCACCATGGGCCTGAAAGGAGATCGGGGATCCCCTGGAGAAAGGGGCT
TGGCCGGCCTCCCAGGCCAGCCTGGCACACCCGGACACCCCGGCCCTCCGGGTGAACCTGGTTC
GGATGGTGCAGCTGGCAAAGAGGGACCTCCAGGAAAGCAGGGACTCTATGGACCCCCCGGCCCA
AAGGGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAAAAGGGAAGATCTGGCATGC
CTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCACCGGGTCCTGCGGGAGAGAG
AGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCCTGGTTTGCCAGGCTCTATG
GGAGACATGGTGAATTATGATGATATCAAGAGGTTTATCAGACAAGAGATCATTAAACTGTTTG
ATGAGAGGATGGCTTACTACACCTCTAGGATGCAGTTCCCCATGGAGGTGGCAGCAGCTCCAGG
CCGGCCAGGGCCTCCAGGGAAGGATGGCGCCCCAGGGCGGCCAGGTGCTCCAGGGTCACCTGGG
CTCCCTGGTCAGATAGGCCGAGAAGGACGCCAGGGTTTGCCAGGAATGAGAGGATTGCCTGGTA
CCAAAGGTGATAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAAATGGTCTCCCTGGCCCTCC
AGGTCCTCAAGGGCCTCCAGGTTATGGCAAGATGGGTGCAACCGGGCCAATGGGCCAGCAAGGC
ATTCCTGGGATCCCTGGCCCCCCGGGGCCCATGGGCCAGCCAGGGAAGGCAGGCCACTGCAACC
CCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGTACCCGCCCATAAAAAGCATGAAGGG
GCCTTTTGGTTGAAGCTCCTGCTCGCACTGAGAGGAAGGACTCTACTAGGAATAAATGGCCAAA
GCTTACAGGACTCTGACAGGTTGTGAATGTTTGTACTATTCTTGTGTTTGTTGTTTTGTTGTTG
TTGCTGTTAATATTTTTTTTAACAATAAAGAAAGAAAACTATCTGTAACCCCACTTCCATGGGG
TTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_006238947 ⟹ XP_006239009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,034 - 148,311,645 (+)	NCBI
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI

Sequence:

show sequence

AATTTAGCACAGGGTTGGGGAGTGGTGTTCTATCCCCTCCTCCCAGTGCAGACAGAGGTTCTAC
AGCCTAGGAATGCTAGGCCCAGGCACTGGAAAAAGCTGACCACTGAGGCTTGGAGCGCCCGGCA
GTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGACGCGGAAAAGCTG
GGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCTG
CTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTTG
GTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATGG
GTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGTGAGCGCTGCCCAACTTCAC
AGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCAACATGACTGGCTTCAACCT
AATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGATCCGCAACCCCAAGGGGCCT
CTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGACGAGTGTTCCCTCGGGGCC
TCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAACACACCTTCCGGAATACATG
GTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTCCTTGGAAGTCAACAGCCAG
GAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTTGTGTCCTGCATCTTCCCAG
TGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCGTGGCAAGCCGTGTGGCCTC
TGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCCCCGGCAGCCCATCCGGCCT
GGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCGGTTTCATTTGACCTTCAGC
AGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCTGCTGTGAGATCTTACCGGG
AGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAGTAATGAGCTCATTGAGATC
AATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTGGAAGAACCTCATAACAGCA
AGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAAGGGGGACAAAGGCCCACCA
GGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCGGGAGAGCAATGTCACACTT
GGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACTGGACCATCAGGCCCCAAGG
GAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAGATGGCCCACTTCAGTGTGC
AGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACCCTCAGGACTCCCGGGCCCA
ACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTCAAAGGACTGCCGGGAAAGC
CGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCAAAGGGCAGAAAGGAGACCC
TGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCCTGGCCTACCCGGACCACCT
GGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCAGGCCCTAAAGGAGCAAAGG
GCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGGGGAAGCCAGGAGTACCCGG
GACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCTGCCCGAAGGGTTCCAGAAC
TTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGTGATCCTGCTCCAGCCAGGG
AGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAGGCATCCAAGGAATGAAAGG
AGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGCCCAGCATCTTGGGCCCTCC
ACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCTGGCCTTCCGGGCAAACCTG
GAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTGGCGATGCTGGGCCGGCTGG
AGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGGGGCAAAGGGGGAGCCGTGT
GAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAAGTGGTTCACCTGCCCGGCC
CAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGCCTGGGAAGCAGGGTAGAGC
TGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCCAGGAGACCCTGGAACGCCA
GGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGGGGTCCTGCAGGACCAAAAG
GAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGGCGTTGACAGATGTATCGGG
ACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGGTGTGGGTCGGCCCGGTAAA
CCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTGAAGGGCACTCAGGGAGAGC
CTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTGGAACCCCAGGTTTGCCTGG
CATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGGCGAACACGGTGCCCAGGGA
CCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGTGCTAGTATCTCTGGGCCTC
CGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGTGTTCCTGTCCTTCTCGAGG
AGAGCCCATCTTCTCCGGCATGCCGGGTGCTCCGGGACTGTGGATGGGCAGCTCCTCGCAGCCG
GGCCCGCAGGGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCCGGAATGCCTGGATTGCAGG
GAGTGCCTGGACACAACGGTTTGCCAGGACAGCCTGGGCTCACTGCCGAGCTGGGATCCTTACC
CATCGAGCAGCATCTCCTCAAGAGCATCTGTGGTGACTGTGCCCAGGGCCAGGCAGCCCATTCA
GCCTCCCTTCTGGTGAAAGGAGAAAAGGGGGACCAGGGTGTCCCTGGTGTGCCGGGTTTCAACG
ACTGTGCCAGGTGCTTCATAGAGAGGGAGCGCCCGAGAGCTGAGGAGGCCAGGGGAGACAACAG
TGAGGGAGAACCTGGCTGTCCTGGGAGCCCTGGCCTGCCTGGTCCTCCAGGGATGCCTGGCCAA
AGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCTCCTGGTCTTCCAGGCCCTGTTGGCCCCC
CAGGTTTTCCTGGTGCTGTTGGCTCCCCCGGATTGCCTGGTCTTCAAGGGGAGCGAGGCCCCAC
AGGCCTGACTGGAGACAAGGGAGAACCGGGTCCCCCAGGACAGCCTGGCTACCCGGGTGCCATG
GGTCCCCCAGGACTGCCTGGCATCAAGGGAGAAAGAGGATATGCTGGCCCTGCGGGAGAGAAGG
GGGAGTCGGGCCCACCAGGATCTGAAGGCCTTCCAGGTCCCCAAGGTCCAGCGGGTCCCCGAGG
AGAGCGAGGTCCCCAAGGGAGCTCGGGAGAGAAGGGTGATCAGGGATTTCAAGGCCAGCCAGGT
TTCCCTGGCCCACCGGGTCCCCCGGGATTCCCAGGCAAAGCTGGAGCTCCTGGCCCACCTGGCC
CCCAAGCAGAGAAGGGCAGTGAAGGGATGCGAGGTCCCTCAGGCTTGCCTGGTTCCCCTGGACC
ACCAGGCCCTCCTGGGATTCAGGGCCCTGCTGGACTGGATGGACTGGATGGGAAAGACGGCAAA
CCGGGCCTGAGGGGGGACCCAGGTCCCGCTGGCCCTCCTGGACTCATGGGACCTCCAGGTTTCA
AAGGGAAAACAGGGCATCCTGGTCTCCCTGGACCTAAGGGTGACTGTGGAAAACCAGGTCCTCC
TGGCAGCAGTGGCCGGCCAGGTGCAGAGGGTGAGCCCGGTGCCATGGGACCCCAGGGACGACCA
GGACCTCCAGGGCATCTTGGGCCACAGGGGCCTCCAGGCCAGCCAGGTCCACCTGGGCTCTCCA
CCATGGGCCTGAAAGGAGATCGGGGATCCCCTGGAGAAAGGGGCTTGGCCGGCCTCCCAGGCCA
GCCTGGCACACCCGGACACCCCGGCCCTCCGGGTGAACCTGGTTCGGATGGTGCAGCTGGCAAA
GAGGGACCTCCAGGAAAGCAGGGACTCTATGGACCCCCCGGCCCAAAGGGTGACCCAGGACCTG
CAGGACAGAAAGGCCAAGCAGGAGAAAAGGGAAGATCTGGCATGCCTGGGGGCCCTGGCAAGAG
TGGCTCCATGGGACCGATTGGACCACCGGGTCCTGCGGGAGAGAGAGGCCACCCTGGGTCCCCA
GGGCCTGCTGGGAACCCTGGATTGCCTGGTTTGCCAGGCTCTATGGGAGACATGGTGAATTATG
ATGATATCAAGAGGTTTATCAGACAAGAGATCATTAAACTGTTTGATGAGAGGATGGCTTACTA
CACCTCTAGGATGCAGTTCCCCATGGAGGTGGCAGCAGCTCCAGGCCGGCCAGGGCCTCCAGGG
AAGGATGGCGCCCCAGGGCGGCCAGGTGCTCCAGGGTCACCTGGGCTCCCTGGTCAGATAGGCC
GAGAAGGACGCCAGGGTTTGCCAGGAATGAGAGGATTGCCTGGTACCAAAGGTGATAAGGGAGA
CATTGGTGTTGGCATTGCAGGAGAAAATGGTCTCCCTGGCCCTCCAGGTCCTCAAGGGCCTCCA
GGTTATGGCAAGATGGGTGCAACCGGGCCAATGGGCCAGCAAGGCATTCCTGGGATCCCTGGCC
CCCCGGGGCCCATGGGCCAGCCAGGGAAGGCAGGCCACTGCAACCCCTCAGACTGTTTTGGGGC
CATGCCAATGGAGCAGCAGTACCCGCCCATAAAAAGCATGAAGGGGCCTTTTGGTTGAAGCTCC
TGCTCGCACTGAGAGGAAGGACTCTACTAGGAATAAATGGCCAAAGCTTACAGGACTCTGACAG
GTTGTGAATGTTTGTACTATTCTTGTGTTTGTTGTTTTGTTGTTGTTGCTGTTAATATTTTTTT
TAACAATAAAGAAAGAAAACTATCTGTAACCCCACTTCCATGGGGTTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_006238948 ⟹ XP_006239010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,033 - 148,311,645 (+)	NCBI
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI

Sequence:

show sequence

TAATTTAGCACAGGGTTGGGGAGTGGTGTTCTATCCCCTCCTCCCAGTGCAGACAGAGGTTCTA
CAGCCTAGGAATGCTAGGCCCAGGCACTGGAAAAAGCTGACCACTGAGGCTTGGAGCGCCCGGC
AGTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGACGCGGAAAAGCT
GGGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCT
GCTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTT
GGTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATG
GGTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGGGCCAACTCTGTCCCAGGT
GAGCGCTGCCCAACTTCACAGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCA
ACATGACTGGCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGAT
CCGCAACCCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGA
CGAGTGTTCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAAC
ACACCTTCCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTC
CTTGGAAGTCAACAGCCAGGAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTT
GTGTCCTGCATCTTCCCAGTGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCG
TGGCAAGCCGTGTGGCCTCTGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCC
CCGGCAGCCCATCCGGCCTGGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCG
GTTTCATTTGACCTTCAGCAGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCT
GCTGTGAGATCTTACCGGGAGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAG
TAATGAGCTCATTGAGATCAATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTG
GAAGAACCTCATAACAGCAAGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAA
GGGGGACAAAGGCCCACCAGGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCG
GGAGAGCAATGTCACACTTGGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACT
GGACCATCAGGCCCCAAGGGAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAG
ATGGCCCACTTCAGTGTGCAGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACC
CTCAGGACTCCCGGGCCCAACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTC
AAAGGACTGCCGGGAAAGCCGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCA
AAGGGCAGAAAGGAGACCCTGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCC
TGGCCTACCCGGACCACCTGGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCA
GGCCCTAAAGGAGCAAAGGGCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGG
GGAAGCCAGGAGTACCCGGGACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCT
GCCCGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGT
GATCCTGCTCCAGCCAGGGAGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAG
GCATCCAAGGAATGAAAGGAGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGC
CCAGCATCTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCT
GGCCTTCCGGGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTG
GCGATGCTGGGCCGGCTGGAGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGG
GGCAAAGGGGGAGCCGTGTGAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAA
GTGGTTCACCTGCCCGGCCCAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGC
CTGGGAAGCAGGGTAGAGCTGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCC
AGGAGACCCTGGAACGCCAGGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGG
GGTCCTGCAGGACCAAAAGGAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGG
CGTTGACAGATGTATCGGGACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGG
TGTGGGTCGGCCCGGTAAACCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTG
AAGGGCACTCAGGGAGAGCCTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTG
GAACCCCAGGTTTGCCTGGCATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGG
CGAACACGGTGCCCAGGGACCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGT
GCTAGTATCTCTGGGCCTCCGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGT
GTTCCTGTCCTTCTCGAGGAGAGCCCATCTTCTCCGGCATGCCGGGTGCTCCGGGACTGTGGAT
GGGCAGCTCCTCGCAGCCGGGCCCGCAGGGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCC
GGAATGCCTGGATTGCAGGGAGTGCCTGGACACAACGGTTTGCCAGGACAGCCTGGGCTCACTG
CCGAGCTGGGATCCTTACCCATCGAGCAGCATCTCCTCAAGAGCATCTGTGGTGACTGTGCCCA
GGGCCAGGCAGCCCATTCAGCCTCCCTTCTGGTGAAAGGAGAAAAGGGGGACCAGGGTGTCCCT
GGTGTGCCGGGTTTCAACGACTGTGCCAGGTGCTTCATAGAGAGGGAGCGCCCGAGAGCTGAGG
AGGCCAGGGGAGACAACAGTGAGGGAGAACCTGGCTGTCCTGGGAGCCCTGGCCTGCCTGGTCC
TCCAGGGATGCCTGGCCAAAGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCTCCTGGTCTT
CCAGGCCCTGTTGGTCTTCAAGGGGAGCGAGGCCCCACAGGCCTGACTGGAGACAAGGGAGAAC
CGGGTCCCCCAGGACAGCCTGGCTACCCGGGTGCCATGGGTCCCCCAGGACTGCCTGGCATCAA
GGGAGAAAGAGGATATGCTGGCCCTGCGGGAGAGAAGGGGGAGTCGGGCCCACCAGGATCTGAA
GGCCTTCCAGGTCCCCAAGGTCCAGCGGGTCCCCGAGGAGAGCGAGGTCCCCAAGGGAGCTCGG
GAGAGAAGGGTGATCAGGGATTTCAAGGCCAGCCAGGTTTCCCTGGCCCACCGGGTCCCCCGGG
ATTCCCAGGCAAAGCTGGAGCTCCTGGCCCACCTGGCCCCCAAGCAGAGAAGGGCAGTGAAGGG
ATGCGAGGTCCCTCAGGCTTGCCTGGTTCCCCTGGACCACCAGGCCCTCCTGGGATTCAGGGCC
CTGCTGGACTGGATGGACTGGATGGGAAAGACGGCAAACCGGGCCTGAGGGGGGACCCAGGTCC
CGCTGGCCCTCCTGGACTCATGGGACCTCCAGGTTTCAAAGGGAAAACAGGGCATCCTGGTCTC
CCTGGACCTAAGGGTGACTGTGGAAAACCAGGTCCTCCTGGCAGCAGTGGCCGGCCAGGTGCAG
AGGGTGAGCCCGGTGCCATGGGACCCCAGGGACGACCAGGACCTCCAGGGCATCTTGGGCCACA
GGGGCCTCCAGGCCAGCCAGGTCCACCTGGGCTCTCCACCATGGGCCTGAAAGGAGATCGGGGA
TCCCCTGGAGAAAGGGGCTTGGCCGGCCTCCCAGGCCAGCCTGGCACACCCGGACACCCCGGCC
CTCCGGGTGAACCTGGTTCGGATGGTGCAGCTGGCAAAGAGGGACCTCCAGGAAAGCAGGGACT
CTATGGACCCCCCGGCCCAAAGGGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAA
AAGGGAAGATCTGGCATGCCTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCAC
CGGGTCCTGCGGGAGAGAGAGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCC
TGGTTTGCCAGGCTCTATGGGAGACATGGTGAATTATGATGATATCAAGAGGTTTATCAGACAA
GAGATCATTAAACTGTTTGATGAGAGGATGGCTTACTACACCTCTAGGATGCAGTTCCCCATGG
AGGTGGCAGCAGCTCCAGGCCGGCCAGGGCCTCCAGGGAAGGATGGCGCCCCAGGGCGGCCAGG
TGCTCCAGGGTCACCTGGGCTCCCTGGTCAGATAGGCCGAGAAGGACGCCAGGGTTTGCCAGGA
ATGAGAGGATTGCCTGGTACCAAAGGTGATAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAA
ATGGTCTCCCTGGCCCTCCAGGTCCTCAAGGGCCTCCAGGTTATGGCAAGATGGGTGCAACCGG
GCCAATGGGCCAGCAAGGCATTCCTGGGATCCCTGGCCCCCCGGGGCCCATGGGCCAGCCAGGG
AAGGCAGGCCACTGCAACCCCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGTACCCGC
CCATAAAAAGCATGAAGGGGCCTTTTGGTTGAAGCTCCTGCTCGCACTGAGAGGAAGGACTCTA
CTAGGAATAAATGGCCAAAGCTTACAGGACTCTGACAGGTTGTGAATGTTTGTACTATTCTTGT
GTTTGTTGTTTTGTTGTTGTTGCTGTTAATATTTTTTTTAACAATAAAGAAAGAAAACTATCTG
TAACCCCACTTCCATGGGGTTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_006238950 ⟹ XP_006239012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,033 - 148,311,645 (+)	NCBI
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI

Sequence:

show sequence

TAATTTAGCACAGGGTTGGGGAGTGGTGTTCTATCCCCTCCTCCCAGTGCAGACAGAGGTTCTA
CAGCCTAGGAATGCTAGGCCCAGGCACTGGAAAAAGCTGACCACTGAGGCTTGGAGCGCCCGGC
AGTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGACGCGGAAAAGCT
GGGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCT
GCTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTT
GGTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATG
GGTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGGGCCAACTCTGTCCCAGGT
GAGCGCTGCCCAACTTCACAGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCA
ACATGACTGGCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGAT
CCGCAACCCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGA
CGAGTGTTCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAAC
ACACCTTCCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTC
CTTGGAAGTCAACAGCCAGGAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTT
GTGTCCTGCATCTTCCCAGTGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCG
TGGCAAGCCGTGTGGCCTCTGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCC
CCGGCAGCCCATCCGGCCTGGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCG
GTTTCATTTGACCTTCAGCAGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCT
GCTGTGAGATCTTACCGGGAGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAG
TAATGAGCTCATTGAGATCAATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTG
GAAGAACCTCATAACAGCAAGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAA
GGGGGACAAAGGCCCACCAGGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCG
GGAGAGCAATGTCACACTTGGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACT
GGACCATCAGGCCCCAAGGGAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAG
ATGGCCCACTTCAGTGTGCAGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACC
CTCAGGACTCCCGGGCCCAACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTC
AAAGGACTGCCGGGAAAGCCGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCA
AAGGGCAGAAAGGAGACCCTGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCC
TGGCCTACCCGGACCACCTGGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCA
GGCCCTAAAGGAGCAAAGGGCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGG
GGAAGCCAGGAGTACCCGGGACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCT
GCCCGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGT
GATCCTGCTCCAGCCAGGGAGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAG
GCATCCAAGGAATGAAAGGAGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGC
CCAGCATCTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCT
GGCCTTCCGGGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTG
GCGATGCTGGGCCGGCTGGAGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGG
GGCAAAGGGGGAGCCGTGTGAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAA
GTGGTTCACCTGCCCGGCCCAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGC
CTGGGAAGCAGGGTAGAGCTGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCC
AGGAGACCCTGGAACGCCAGGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGG
GGTCCTGCAGGACCAAAAGGAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGG
CGTTGACAGATGTATCGGGACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGG
TGTGGGTCGGCCCGGTAAACCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTG
AAGGGCACTCAGGGAGAGCCTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTG
GAACCCCAGGTTTGCCTGGCATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGG
CGAACACGGTGCCCAGGGACCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGT
GCTAGTATCTCTGGGCCTCCGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGT
GTTCCTGTCCTTCTCGAGGAGAGCCCATCTTCTCCGGCATGCCGGGTCCCCCAGGTGTCCCCGG
ACCACCAGGTCCCCCCGGAATGCCTGGATTGCAGGGAGTGCCTGGACACAACGGTTTGCCAGGA
CAGCCTGGGCTCACTGCCGAGCTGGGATCCTTACCCATCGAGCAGCATCTCCTCAAGAGCATCT
GTGGTGACTGTGCCCAGGGCCAGGCAGCCCATTCAGCCTCCCTTCTGGTGAAAGGAGAAAAGGG
GGACCAGGGTGTCCCTGGTGTGCCGGGTTTCAACGACTGTGCCAGGTGCTTCATAGAGAGGGAG
CGCCCGAGAGCTGAGGAGGCCAGGGGAGACAACAGTGAGGGAGAACCTGGCTGTCCTGGGAGCC
CTGGCCTGCCTGGTCCTCCAGGGATGCCTGGCCAAAGAGGAGAAGAGGGTCCACCTGGCATGAG
GGGCTCTCCTGGTCTTCCAGGCCCTGTTGGCCCCCCAGGTTTTCCTGGTGCTGTTGGCTCCCCC
GGATTGCCTGGTCTTCAAGGGGAGCGAGGCCCCACAGGCCTGACTGGAGACAAGGGAGAACCGG
GTCCCCCAGGACAGCCTGGCTACCCGGGTGCCATGGGTCCCCCAGGACTGCCTGGCATCAAGGG
AGAAAGAGGATATGCTGGCCCTGCGGGAGAGAAGGGGGAGTCGGGCCCACCAGGATCTGAAGGC
CTTCCAGGTCCCCAAGGTCCAGCGGGTCCCCGAGGAGAGCGAGGTCCCCAAGGGAGCTCGGGAG
AGAAGGGTGATCAGGGATTTCAAGGCCAGCCAGGTTTCCCTGGCCCACCGGGTCCCCCGGGATT
CCCAGGCAAAGCTGGAGCTCCTGGCCCACCTGGCCCCCAAGCAGAGAAGGGCAGTGAAGGGATG
CGAGGTCCCTCAGGCTTGCCTGGTTCCCCTGGACCACCAGGCCCTCCTGGGATTCAGGGCCCTG
CTGGACTGGATGGACTGGATGGGAAAGACGGCAAACCGGGCCTGAGGGGGGACCCAGGTCCCGC
TGGCCCTCCTGGACTCATGGGACCTCCAGGTTTCAAAGGGAAAACAGGGCATCCTGGTCTCCCT
GGACCTAAGGGTGACTGTGGAAAACCAGGTCCTCCTGGCAGCAGTGGCCGGCCAGGTGCAGAGG
GTGAGCCCGGTGCCATGGGACCCCAGGGACGACCAGGACCTCCAGGGCATCTTGGGCCACAGGG
GCCTCCAGGCCAGCCAGGTCCACCTGGGCTCTCCACCATGGGCCTGAAAGGAGATCGGGGATCC
CCTGGAGAAAGGGGCTTGGCCGGCCTCCCAGGCCAGCCTGGCACACCCGGACACCCCGGCCCTC
CGGGTGAACCTGGTTCGGATGGTGCAGCTGGCAAAGAGGGACCTCCAGGAAAGCAGGGACTCTA
TGGACCCCCCGGCCCAAAGGGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAAAAG
GGAAGATCTGGCATGCCTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCACCGG
GTCCTGCGGGAGAGAGAGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCCTGG
TTTGCCAGGCTCTATGGGAGACATGGTGAATTATGATGATATCAAGAGGTTTATCAGACAAGAG
ATCATTAAACTGTTTGATGAGAGGATGGCTTACTACACCTCTAGGATGCAGTTCCCCATGGAGG
TGGCAGCAGCTCCAGGCCGGCCAGGGCCTCCAGGGAAGGATGGCGCCCCAGGGCGGCCAGGTGC
TCCAGGGTCACCTGGGCTCCCTGGTCAGATAGGCCGAGAAGGACGCCAGGGTTTGCCAGGAATG
AGAGGATTGCCTGGTACCAAAGGTGATAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAAATG
GTCTCCCTGGCCCTCCAGGTCCTCAAGGGCCTCCAGGTTATGGCAAGATGGGTGCAACCGGGCC
AATGGGCCAGCAAGGCATTCCTGGGATCCCTGGCCCCCCGGGGCCCATGGGCCAGCCAGGGAAG
GCAGGCCACTGCAACCCCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGTACCCGCCCA
TAAAAAGCATGAAGGGGCCTTTTGGTTGAAGCTCCTGCTCGCACTGAGAGGAAGGACTCTACTA
GGAATAAATGGCCAAAGCTTACAGGACTCTGACAGGTTGTGAATGTTTGTACTATTCTTGTGTT
TGTTGTTTTGTTGTTGTTGCTGTTAATATTTTTTTTAACAATAAAGAAAGAAAACTATCTGTAA
CCCCACTTCCATGGGGTTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_006238951 ⟹ XP_006239013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI
Rnor_6.0	5	148,257,034 - 148,311,645 (+)	NCBI
Rnor_5.0	5	151,976,106 - 152,030,103 (+)	NCBI

Sequence:

show sequence

AATTTAGCACAGGGTTGGGGAGTGGTGTTCTATCCCCTCCTCCCAGTGCAGACAGAGGTTCTAC
AGCCTAGGAATGCTAGGCCCAGGCACTGGAAAAAGCTGACCACTGAGGCTTGGAGCGCCCGGCA
GTCCCGGCAGGCGTGCGCTGCGGTGCGGCACTCAGTCTAGAGAACTCGGGACGCGGAAAAGCTG
GGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCTG
CTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTTG
GTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATGG
GTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAGGTGAGCGCTGCCCAACTTCAC
AGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCAACATGACTGGCTTCAACCT
AATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGATCCGCAACCCCAAGGGGCCT
CTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCGACGAGTGTTCCCTCGGGGCC
TCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAACACACCTTCCGGAATACATG
GTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAGGTCTCCTTGGAAGTCAACAGCCAG
GAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTTGTGTCCTGCATCTTCCCAG
TGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCGTGGCAAGCCGTGTGGCCTC
TGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCCCCGGCAGCCCATCCGGCCT
GGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCGGTTTCATTTGACCTTCAGC
AGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCTGCTGTGAGATCTTACCGGG
AGGGTGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAGTAATGAGCTCATTGAGATC
AATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTGGAAGAACCTCATAACAGCA
AGGTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAAGGGGGACAAAGGCCCACCA
GGAGACTGGAGCCAGCGAGTGTCCGCCCTGTGCCCGCAGCGCCCGGGAGAGCAATGTCACACTT
GGTCCCCCTGGCCTCAAGGGAGGGAAAGGTGACCAAGGCCTGACTGGACCATCAGGCCCCAAGG
GAGAGAAGGGAGCACGGGGCAATGACTGTGTTCGAATCTCCCCAGATGGCCCACTTCAGTGTGC
AGAAGGTCCGAAAGGAGAGAAGGGAGAATCAGGAGACTTGGGACCCTCAGGACTCCCGGGCCCA
ACAGGCCAGAAGGGCCAGAAAGGGGAGAAGGGCGATGGAGGCCTCAAAGGACTGCCGGGAAAGC
CGGGGCGAGATGGTCGGCCAGGAGAGATCTGTGTCATTGGGCCCAAAGGGCAGAAAGGAGACCC
TGGCTTTGTTGGGCCTGAGGGATTGGCAGGAGAGCCTGGGCCCCCTGGCCTACCCGGACCACCT
GGGATAGGACTGCCTGGGACTCCTGGAGATCCAGGTGGCCCACCAGGCCCTAAAGGAGCAAAGG
GCAGCTCTGGAATACCAGGAAAGGAAGGCCCAGGAGGGAAGCCGGGGAAGCCAGGAGTACCCGG
GACTAAGGGAGAAAAGGGTGACCCCTGTGAAGTGTGTCCAACGCTGCCCGAAGGGTTCCAGAAC
TTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGTGATCCTGCTCCAGCCAGGG
AGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGGGGAGATCCAGGCATCCAAGGAATGAAAGG
AGAGAAGGGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGCCCAGCATCTTGGGCCCTCC
ACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCTGGCCTTCCGGGCAAACCTG
GAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAGGGTAGTTTTGGCGATGCTGGGCCGGCTGG
AGTTGCGGGACCACCAGGACCAGTGGGACCGGCTGGTATCAAAGGGGCAAAGGGGGAGCCGTGT
GAGCCCTGTGCATCTTTGTCCAAGCTCCAAGATGGGGACACTCAAGTGGTTCACCTGCCCGGCC
CAGCTGGAGAGAAGGGAGAGCCTGGGCCCCCGGGCTCCGGGCTGCCTGGGAAGCAGGGTAGAGC
TGGAGAGCGTGGACTCAAGGGGCAGAAGGGGGATGCTGGGAATCCAGGAGACCCTGGAACGCCA
GGCATCACAGGGCAGCCTGGAATGTCTGGAGAGCCTGGGGTTCGGGGTCCTGCAGGACCAAAAG
GAGAAAAGGGCGATGGATGCACTGCCTGCCCTAGCCTGCAGGGGGCGTTGACAGATGTATCGGG
ACTGCCTGGGAAACCAGGTCCCAAAGGAGAGCCAGGTCCTGAAGGTGTGGGTCGGCCCGGTAAA
CCAGGCCAGCCTGGTCTACCAGGAGTTCAAGGGCCTCCAGGACTGAAGGGCACTCAGGGAGAGC
CTGGACCTCCAGGCACCGGTGCTGAGGGACCCCAGGGGGAGCCTGGAACCCCAGGTTTGCCTGG
CATTCAGGGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGGCGAACACGGTGCCCAGGGA
CCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGTGCTAGTATCTCTGGGCCTC
CGGGCCAAAAGGGATCACGAGGAGAGAAAGGTGAACCGGGAGAGTGTTCCTGTCCTTCTCGAGG
AGAGCCCATCTTCTCCGGCATGCCGGGTGCTCCGGGACTGTGGATGGGCAGCTCCTCGCAGCCG
GGCCCGCAGGGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCCGGAATGCCTGGATTGCAGG
GAGTGCCTGGACACAACGGTTTGCCAGGACAGCCTGGGCTCACTGCCGAGCTGGGATCCTTACC
CATCGAGCAGCATCTCCTCAAGAGCATCTGTGGTGACTGTGCCCAGGGCCAGGCAGCCCATTCA
GCCTCCCTTCTGGTGAAAGGAGAAAAGGGGGACCAGGGTGTCCCTGGTGTGCCGGGTTTCAACG
ACTGTGCCAGGTGCTTCATAGAGAGGGAGCGCCCGAGAGCTGAGGAGGCCAGGGGAGACAACAG
TGAGGGAGAACCTGGCTGTCCTGGGAGCCCTGGCCTGCCTGGTCCTCCAGGGATGCCTGGCCAA
AGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCTCCTGGTCTTCCAGGCCCTGTTGGTCTTC
AAGGGGAGCGAGGCCCCACAGGCCTGACTGGAGACAAGGGAGAACCGGGTCCCCCAGGACAGCC
TGGCTACCCGGGTGCCATGGGTCCCCCAGGACTGCCTGGCATCAAGGGAGAAAGAGGATATGCT
GGCCCTGCGGGAGAGAAGGGGGAGTCGGGCCCACCAGGATCTGAAGGCCTTCCAGGTCCCCAAG
GTCCAGCGGGTCCCCGAGGAGAGCGAGGTCCCCAAGGGAGCTCGGGAGAGAAGGGTGATCAGGG
ATTTCAAGGCCAGCCAGGTTTCCCTGGCCCACCGGGTCCCCCGGGATTCCCAGGCAAAGCTGGA
GCTCCTGGCCCACCTGGCCCCCAAGCAGAGAAGGGCAGTGAAGGGATGCGAGGTCCCTCAGGCT
TGCCTGGTTCCCCTGGACCACCAGGCCCTCCTGGGATTCAGGGCCCTGCTGGACTGGATGGACT
GGATGGGAAAGACGGCAAACCGGGCCTGAGGGGGGACCCAGGTCCCGCTGGCCCTCCTGGACTC
ATGGGACCTCCAGGTTTCAAAGGGAAAACAGGGCATCCTGGTCTCCCTGGACCTAAGGGTGACT
GTGGAAAACCAGGTCCTCCTGGCAGCAGTGGCCGGCCAGGTGCAGAGGGTGAGCCCGGTGCCAT
GGGACCCCAGGGACGACCAGGACCTCCAGGGCATCTTGGGCCACAGGGGCCTCCAGGCCAGCCA
GGTCCACCTGGGCTCTCCACCATGGGCCTGAAAGGAGATCGGGGATCCCCTGGAGAAAGGGGCT
TGGCCGGCCTCCCAGGCCAGCCTGGCACACCCGGACACCCCGGCCCTCCGGGTGAACCTGGTTC
GGATGGTGCAGCTGGCAAAGAGGGACCTCCAGGAAAGCAGGGACTCTATGGACCCCCCGGCCCA
AAGGGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAAAAGGGAAGATCTGGCATGC
CTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCACCGGGTCCTGCGGGAGAGAG
AGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCCTGGTTTGCCAGGCTCTATG
GGAGACATGGTGAATTATGATGATATCAAGAGGTTTATCAGACAAGAGATCATTAAACTGTTTG
ATGAGAGGATGGCTTACTACACCTCTAGGATGCAGTTCCCCATGGAGGTGGCAGCAGCTCCAGG
CCGGCCAGGGCCTCCAGGGAAGGATGGCGCCCCAGGGCGGCCAGGTGCTCCAGGGTCACCTGGG
CTCCCTGGTCAGATAGGCCGAGAAGGACGCCAGGGTTTGCCAGGAATGAGAGGATTGCCTGGTA
CCAAAGGTGATAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAAATGGTCTCCCTGGCCCTCC
AGGTCCTCAAGGGCCTCCAGGTTATGGCAAGATGGGTGCAACCGGGCCAATGGGCCAGCAAGGC
ATTCCTGGGATCCCTGGCCCCCCGGGGCCCATGGGCCAGCCAGGGAAGGCAGGCCACTGCAACC
CCTCAGACTGTTTTGGGGCCATGCCAATGGAGCAGCAGTACCCGCCCATAAAAAGCATGAAGGG
GCCTTTTGGTTGAAGCTCCTGCTCGCACTGAGAGGAAGGACTCTACTAGGAATAAATGGCCAAA
GCTTACAGGACTCTGACAGGTTGTGAATGTTTGTACTATTCTTGTGTTTGTTGTTTTGTTGTTG
TTGCTGTTAATATTTTTTTTAACAATAAAGAAAGAAAACTATCTGTAACCCCACTTCCATGGGG
TTCCCCTGGTGCTGCA

hide sequence

RefSeq Acc Id:

XM_039110472 ⟹ XP_038966400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI

RefSeq Acc Id:

XM_039110473 ⟹ XP_038966401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI

RefSeq Acc Id:

XM_039110476 ⟹ XP_038966404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,442,825 (+)	NCBI

RefSeq Acc Id:

XM_039110477 ⟹ XP_038966405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,723,816 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,439,628 (+)	NCBI

RefSeq Acc Id:

XM_039110478 ⟹ XP_038966406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,686,797 - 147,726,879 (+)	NCBI
mRatBN7.2	5	142,402,625 - 142,442,825 (+)	NCBI

RefSeq Acc Id:

XM_063288120 ⟹ XP_063144190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI

RefSeq Acc Id:

XM_063288121 ⟹ XP_063144191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI

RefSeq Acc Id:

XM_063288122 ⟹ XP_063144192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,726,879 (+)	NCBI

RefSeq Acc Id:

XR_005504507

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,710,364 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,426,199 (+)	NCBI

RefSeq Acc Id:

XR_005504508

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	147,672,559 - 147,710,363 (+)	NCBI
mRatBN7.2	5	142,388,376 - 142,426,199 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001289896	(Get FASTA)	NCBI Sequence Viewer
	XP_006239008	(Get FASTA)	NCBI Sequence Viewer
	XP_006239009	(Get FASTA)	NCBI Sequence Viewer
	XP_006239010	(Get FASTA)	NCBI Sequence Viewer
	XP_006239012	(Get FASTA)	NCBI Sequence Viewer
	XP_006239013	(Get FASTA)	NCBI Sequence Viewer
	XP_038966400	(Get FASTA)	NCBI Sequence Viewer
	XP_038966401	(Get FASTA)	NCBI Sequence Viewer
	XP_038966404	(Get FASTA)	NCBI Sequence Viewer
	XP_038966405	(Get FASTA)	NCBI Sequence Viewer
	XP_038966406	(Get FASTA)	NCBI Sequence Viewer
	XP_063144190	(Get FASTA)	NCBI Sequence Viewer
	XP_063144191	(Get FASTA)	NCBI Sequence Viewer
	XP_063144192	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92654	(Get FASTA)	NCBI Sequence Viewer
	EDL80581	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058947
	ENSRNOP00000058947.4
	ENSRNOP00000077174
	ENSRNOP00000077174.1
	ENSRNOP00000089698
	ENSRNOP00000089698.2

RefSeq Acc Id:	XP_006239009 ⟸ XM_006238947
- Peptide Label:	isoform X2
- UniProtKB:	F1LND0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSWAPGLWVLGLWATFSHGTNIGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLNLMKTSA IKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQVTDANGY PQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQ PLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPETSKSRR DTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGASECPPCA RSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKGEKGESG DLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGE PGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEV CPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEPCSSCSS GVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPPGPVGPA GIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKGD AGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEP GPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPP GSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAP GLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHLLKSICG DCAQGQAAHSASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPGCPGSPG LPGPPGMPGQRGEEGPPGMRGSPGLPGPVGPPGFPGAVGSPGLPGLQGERGPTGLTGDKGEPGP PGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEK GDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAG LDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGE PGAMGPQGRPGPPGHLGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPGHPGPPG EPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGP AGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQFPMEVA AAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGIAGENGL PGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPIK SMKGPFG hide sequence

RefSeq Acc Id:	XP_006239013 ⟸ XM_006238951
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5Y198 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSWAPGLWVLGLWATFSHGTNIGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLNLMKTSA IKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQVTDANGY PQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQ PLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPETSKSRR DTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGASECPPCA RSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKGEKGESG DLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGE PGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEV CPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEPCSSCSS GVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPPGPVGPA GIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKGD AGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEP GPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPP GSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAP GLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHLLKSICG DCAQGQAAHSASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPGCPGSPG LPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGL PGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPP GPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRG DPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGH LGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPG KQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGN PGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQFPMEVAAAPGRPGPPGKDGAP GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGIAGENGLPGPPGPQGPPGYGKM GATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPIKSMKGPFG hide sequence

RefSeq Acc Id:

XP_006239008 ⟸ XM_006238946

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLVSWAPGLWVLGLWATFSHGTNIGANSVPGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLN
LMKTSAIKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQV
TDANGYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDC
VSASSQPLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPE
TSKSRRDTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGAS
ECPPCARSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKG
EKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGP
EGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEK
GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEP
CSSCSSGVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPP
GPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGL
KGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKP
GPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPP
GPRGPPGSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFS
GMPGAPGLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHL
LKSICGDCAQGQAAHSASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPG
CPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGPPGFPGAVGSPGLPGLQGERGPTGLTGD
KGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQ
GSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPG
IQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGR
PGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPG
HPGPPGEPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGP
IGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQ
FPMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGI
AGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQ
QYPPIKSMKGPFG

hide sequence

RefSeq Acc Id:

XP_006239010 ⟸ XM_006238948

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLVSWAPGLWVLGLWATFSHGTNIGANSVPGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLN
LMKTSAIKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQV
TDANGYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDC
VSASSQPLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPE
TSKSRRDTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGAS
ECPPCARSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKG
EKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGP
EGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEK
GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEP
CSSCSSGVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPP
GPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGL
KGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKP
GPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPP
GPRGPPGSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFS
GMPGAPGLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHL
LKSICGDCAQGQAAHSASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPG
CPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGA
MGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQP
GFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDG
KPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGR
PGPPGHLGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAG
KEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGS
PGPAGNPGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQFPMEVAAAPGRPGPP
GKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGIAGENGLPGPPGPQGP
PGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPIKSMKGPFG

hide sequence

RefSeq Acc Id:	XP_006239012 ⟸ XM_006238950
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A8Q5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSWAPGLWVLGLWATFSHGTNIGANSVPGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLN LMKTSAIKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQV TDANGYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDC VSASSQPLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPE TSKSRRDTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGAS ECPPCARSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKG EKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGP EGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEK GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEP CSSCSSGVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPP GPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGL KGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKP GPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPP GPRGPPGSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFS GMPGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHLLKSICGDCAQGQAAHS ASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPGCPGSPGLPGPPGMPGQ RGEEGPPGMRGSPGLPGPVGPPGFPGAVGSPGLPGLQGERGPTGLTGDKGEPGPPGQPGYPGAM GPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPG FPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGK PGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRP GPPGHLGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGK EGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSP GPAGNPGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQFPMEVAAAPGRPGPPG KDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGIAGENGLPGPPGPQGPP GYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPIKSMKGPFG hide sequence

RefSeq Acc Id:	NP_001289896 ⟸ NM_001302967
- Peptide Label:	precursor
- UniProtKB:	A0A8I5Y198 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVSWAPGLWVLGLWATFSHGTNIGERCPTSQEEGLKLEHSSDPSTNMTGFNLIRRLNLMKTSA IKKIRNPKGPLILRLGAAPLTQATRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLFQVTDANGY PQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQ PLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCCEILPGGCPPETSKSRR DTQSNELIEINPQTEGKVYTRCFCLEEPHNSKVDAQLMGRSSQKAERGTKAHQETGASECPPCA RSARESNVTLGPPGLKGGKGDQGLTGPSGPKGEKGARGNDCVRISPDGPLQCAEGPKGEKGESG DLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGE PGPPGLPGPPGIGLPGTPGDPGGPPGPKGAKGSSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEV CPTLPEGFQNFVGLPGKPGPKGEPGDPAPAREGLGTVGLKGDRGDPGIQGMKGEKGEPCSSCSS GVGAQHLGPSTGVNEDMGSPVHGLPGLPGKPGIPGPRGMKGEKGSFGDAGPAGVAGPPGPVGPA GIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKGD AGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEP GPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPP GSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAP GLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEQHLLKSICG DCAQGQAAHSASLLVKGEKGDQGVPGVPGFNDCARCFIERERPRAEEARGDNSEGEPGCPGSPG LPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGL PGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPP GPPGFPGKAGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRG DPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGH LGPQGPPGQPGPPGLSTMGLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPG KQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGN PGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQFPMEVAAAPGRPGPPGKDGAP GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIGVGIAGENGLPGPPGPQGPPGYGKM GATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPIKSMKGPFG hide sequence

Ensembl Acc Id:

ENSRNOP00000058947 ⟸ ENSRNOT00000067663

RefSeq Acc Id:	XP_038966404 ⟸ XM_039110476
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038966401 ⟸ XM_039110473
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038966400 ⟸ XM_039110472
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038966405 ⟸ XM_039110477
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038966406 ⟸ XM_039110478
- Peptide Label:	isoform X11

Ensembl Acc Id:

ENSRNOP00000089698 ⟸ ENSRNOT00000100626

Ensembl Acc Id:

ENSRNOP00000077174 ⟸ ENSRNOT00000114962

RefSeq Acc Id:	XP_063144190 ⟸ XM_063288120
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144191 ⟸ XM_063288121
- Peptide Label:	isoform X2
- UniProtKB:	F1LND0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144192 ⟸ XM_063288122
- Peptide Label:	isoform X7

Protein Domains

Thrombospondin-like N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LND0-F1-model_v2	AlphaFold	F1LND0	1-1618	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694093

Promoter ID:

EPDNEW_R4603

Type:

initiation region

Name:

Col16a1_1

Description:

collagen type XVI alpha 1 chain

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	148,257,604 - 148,257,664	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310982	AgrOrtholog
BioCyc Gene	G2FUF-39769	BioCyc
Ensembl Genes	ENSRNOG00000031475	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067663	ENTREZGENE
	ENSRNOT00000067663.4	UniProtKB/TrEMBL
	ENSRNOT00000100626	ENTREZGENE
	ENSRNOT00000100626.2	UniProtKB/TrEMBL
	ENSRNOT00000114962	ENTREZGENE
	ENSRNOT00000114962.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.200	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	Collagen_superfamily	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	TSPN-like_N	UniProtKB/TrEMBL
KEGG Report	rno:366474	UniProtKB/TrEMBL
NCBI Gene	366474	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-1(XVI) CHAIN	UniProtKB/TrEMBL
	COLLAGEN ALPHA-2(IX) CHAIN	UniProtKB/TrEMBL
	COLLAGEN TRIPLE HELIX REPEAT	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
PhenoGen	Col16a1	PhenoGen
RatGTEx	ENSRNOG00000031475	RatGTEx
SMART	TSPN	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
UniProt	A0A8I5Y198	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8Q5	ENTREZGENE, UniProtKB/TrEMBL
	A6ISN0_RAT	UniProtKB/TrEMBL
	F1LND0	ENTREZGENE, UniProtKB/TrEMBL
	Q568Y4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-01	Col16a1	collagen type XVI alpha 1 chain	Col16a1	collagen, type XVI, alpha 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Col16a1	collagen, type XVI, alpha 1	Col16a1	procollagen, type XVI, alpha 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Col16a1	procollagen, type XVI, alpha 1	Col16a1_predicted	procollagen, type XVI, alpha 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Col16a1_predicted	procollagen, type XVI, alpha 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)