Symbol:
Gpn2
Name:
GPN-loop GTPase 2
RGD ID:
1311749
Description:
Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
ATP binding domain 1 family, member B; ATP-binding domain 1 family member B; Atpbd1b; LOC362614; RGD1311749; similar to expressed sequence AI838661
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
GPN2 (GPN-loop GTPase 2)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Gpn2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Gpn2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
GPN2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
GPN2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Gpn2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
GPN2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
GPN2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Gpn2 (GPN-loop GTPase 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
GPN2 (GPN-loop GTPase 2)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Gpn2 (GPN-loop GTPase 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
gpn2 (GPN-loop GTPase 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
CG10222
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
B0207.6
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
GPN2
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
gpn2
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 151,093,279 - 151,101,114 (+) NCBI GRCr8 mRatBN7.2 5 145,809,455 - 145,817,252 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 145,809,651 - 145,817,252 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 148,512,174 - 148,519,668 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 150,281,778 - 150,289,270 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 150,268,334 - 150,275,828 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 151,806,458 - 151,813,954 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 151,806,458 - 151,813,954 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 155,495,838 - 155,503,334 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 151,489,863 - 151,497,359 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 151,500,230 - 151,507,398 (-) NCBI Celera 5 144,230,311 - 144,237,793 (+) NCBI Celera Cytogenetic Map 5 q36 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Gpn2 Rat 1,2-dichloroethane decreases expression ISO Gpn2 (Mus musculus) 6480464 ethylene dichloride results in decreased expression of GPN2 mRNA CTD PMID:28960355 Gpn2 Rat 1,2-dimethylhydrazine increases expression ISO Gpn2 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of GPN2 mRNA CTD PMID:22206623 Gpn2 Rat 1,2-dimethylhydrazine multiple interactions ISO Gpn2 (Mus musculus) 6480464 Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of GPN2 mRNA] CTD PMID:22206623 Gpn2 Rat 17beta-estradiol increases expression ISO Gpn2 (Mus musculus) 6480464 Estradiol results in increased expression of GPN2 mRNA CTD PMID:39298647 Gpn2 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Gpn2 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of GPN2 mRNA CTD PMID:21570461 Gpn2 Rat 2,4-dinitrotoluene affects expression EXP 6480464 2 and 4-dinitrotoluene affects the expression of GPN2 mRNA CTD PMID:21346803 Gpn2 Rat 2,6-dinitrotoluene affects expression EXP 6480464 2 and 6-dinitrotoluene affects the expression of GPN2 mRNA CTD PMID:21346803 Gpn2 Rat 4,4'-sulfonyldiphenol increases expression ISO Gpn2 (Mus musculus) 6480464 bisphenol S results in increased expression of GPN2 mRNA CTD PMID:39298647 Gpn2 Rat 4-amino-2,6-dinitrotoluene affects expression EXP 6480464 4-amino-2 and 6-dinitrotoluene affects the expression of GPN2 mRNA CTD PMID:21346803 Gpn2 Rat acrylamide increases expression ISO GPN2 (Homo sapiens) 6480464 Acrylamide results in increased expression of GPN2 mRNA CTD PMID:32763439 Gpn2 Rat aflatoxin B1 increases expression ISO GPN2 (Homo sapiens) 6480464 Aflatoxin B1 results in increased expression of GPN2 mRNA CTD PMID:27153756 Gpn2 Rat aristolochic acid A increases expression ISO GPN2 (Homo sapiens) 6480464 aristolochic acid I results in increased expression of GPN2 mRNA CTD PMID:33212167 Gpn2 Rat arsane affects methylation ISO GPN2 (Homo sapiens) 6480464 Arsenic affects the methylation of GPN2 gene CTD PMID:25304211 Gpn2 Rat arsane multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat arsenic atom affects methylation ISO GPN2 (Homo sapiens) 6480464 Arsenic affects the methylation of GPN2 gene CTD PMID:25304211 Gpn2 Rat arsenic atom multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat benzo[a]pyrene increases expression ISO Gpn2 (Mus musculus) 6480464 Benzo(a)pyrene results in increased expression of GPN2 mRNA CTD PMID:22228805 Gpn2 Rat benzo[a]pyrene diol epoxide I increases expression ISO GPN2 (Homo sapiens) 6480464 7 more ... CTD PMID:20382639 Gpn2 Rat bisphenol A increases expression ISO Gpn2 (Mus musculus) 6480464 bisphenol A results in increased expression of GPN2 mRNA CTD PMID:32156529 Gpn2 Rat bisphenol F decreases expression ISO Gpn2 (Mus musculus) 6480464 bisphenol F results in decreased expression of GPN2 mRNA CTD PMID:38685157 Gpn2 Rat carbon nanotube increases expression ISO Gpn2 (Mus musculus) 6480464 Nanotubes and Carbon analog results in increased expression of GPN2 mRNA CTD PMID:25554681 Gpn2 Rat chlorpyrifos decreases expression ISO Gpn2 (Mus musculus) 6480464 Chlorpyrifos results in decreased expression of GPN2 mRNA CTD PMID:32715474 Gpn2 Rat chlorpyrifos increases expression ISO Gpn2 (Mus musculus) 6480464 Chlorpyrifos results in increased expression of GPN2 mRNA CTD PMID:37019170 Gpn2 Rat cisplatin multiple interactions ISO GPN2 (Homo sapiens) 6480464 [Cisplatin co-treated with jinfukang] results in decreased expression of GPN2 mRNA CTD PMID:27392435 Gpn2 Rat clofibrate decreases expression ISO Gpn2 (Mus musculus) 6480464 Clofibrate results in decreased expression of GPN2 mRNA CTD PMID:17585979 Gpn2 Rat Dibutyl phosphate affects expression ISO GPN2 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of GPN2 mRNA CTD PMID:37042841 Gpn2 Rat doxorubicin increases expression ISO GPN2 (Homo sapiens) 6480464 Doxorubicin results in increased expression of GPN2 mRNA CTD PMID:29803840 Gpn2 Rat endosulfan increases expression EXP 6480464 Endosulfan results in increased expression of GPN2 mRNA CTD PMID:29391264 Gpn2 Rat flutamide decreases expression EXP 6480464 Flutamide results in decreased expression of GPN2 mRNA CTD PMID:24793618 Gpn2 Rat folic acid multiple interactions ISO Gpn2 (Mus musculus) 6480464 Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of GPN2 mRNA] CTD PMID:22206623 Gpn2 Rat manganese atom multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat manganese(0) multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat manganese(II) chloride multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat methidathion decreases expression ISO Gpn2 (Mus musculus) 6480464 methidathion results in decreased expression of GPN2 mRNA CTD PMID:34813904 Gpn2 Rat methyl methanesulfonate increases expression ISO GPN2 (Homo sapiens) 6480464 Methyl Methanesulfonate results in increased expression of GPN2 mRNA CTD PMID:23649840 Gpn2 Rat nitrates multiple interactions ISO Gpn2 (Mus musculus) 6480464 [Particulate Matter results in increased abundance of Nitrates] which results in increased expression of GPN2 mRNA CTD PMID:35964746 Gpn2 Rat paracetamol increases expression EXP 6480464 Acetaminophen results in increased expression of GPN2 mRNA CTD PMID:33387578 Gpn2 Rat pirinixic acid multiple interactions ISO Gpn2 (Mus musculus) 6480464 [pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of GPN2 mRNA CTD PMID:19710929 Gpn2 Rat pirinixic acid increases expression ISO Gpn2 (Mus musculus) 6480464 pirinixic acid results in increased expression of GPN2 mRNA CTD PMID:23811191 Gpn2 Rat sodium arsenite multiple interactions ISO GPN2 (Homo sapiens) 6480464 [[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of GPN2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of GPN2 mRNA CTD PMID:39836092 Gpn2 Rat tacrolimus hydrate increases expression ISO Gpn2 (Mus musculus) 6480464 Tacrolimus results in increased expression of GPN2 mRNA CTD PMID:25270620 Gpn2 Rat temozolomide increases expression ISO GPN2 (Homo sapiens) 6480464 Temozolomide results in increased expression of GPN2 mRNA CTD PMID:31758290 Gpn2 Rat tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of GPN2 mRNA CTD PMID:31150632 Gpn2 Rat titanium dioxide decreases methylation ISO Gpn2 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of GPN2 gene CTD PMID:35295148 Gpn2 Rat trimellitic anhydride increases expression ISO Gpn2 (Mus musculus) 6480464 trimellitic anhydride results in increased expression of GPN2 mRNA CTD PMID:19042947 Gpn2 Rat triptonide increases expression ISO Gpn2 (Mus musculus) 6480464 triptonide results in increased expression of GPN2 mRNA CTD PMID:33045310 Gpn2 Rat tungsten increases expression ISO Gpn2 (Mus musculus) 6480464 Tungsten results in increased expression of GPN2 mRNA CTD PMID:30912803 Gpn2 Rat valproic acid affects expression ISO Gpn2 (Mus musculus) 6480464 Valproic Acid affects the expression of GPN2 mRNA CTD PMID:17963808 Gpn2 Rat valproic acid increases expression ISO GPN2 (Homo sapiens) 6480464 Valproic Acid results in increased expression of GPN2 mRNA CTD PMID:23179753 and PMID:29154799
Gpn2 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 151,093,279 - 151,101,114 (+) NCBI GRCr8 mRatBN7.2 5 145,809,455 - 145,817,252 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 145,809,651 - 145,817,252 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 148,512,174 - 148,519,668 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 150,281,778 - 150,289,270 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 150,268,334 - 150,275,828 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 151,806,458 - 151,813,954 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 151,806,458 - 151,813,954 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 155,495,838 - 155,503,334 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 151,489,863 - 151,497,359 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 151,500,230 - 151,507,398 (-) NCBI Celera 5 144,230,311 - 144,237,793 (+) NCBI Celera Cytogenetic Map 5 q36 NCBI
GPN2 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 26,876,132 - 26,890,283 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 26,876,132 - 26,890,283 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 27,202,623 - 27,216,774 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 27,078,460 - 27,089,456 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 25,602,968 - 25,613,964 (-) NCBI Celera Cytogenetic Map 1 p36.11 NCBI HuRef 1 25,459,450 - 25,470,451 (-) NCBI HuRef CHM1_1 1 27,319,224 - 27,330,229 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 26,714,196 - 26,728,346 (-) NCBI T2T-CHM13v2.0
Gpn2 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 133,311,684 - 133,319,046 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 133,311,673 - 133,319,046 (+) Ensembl GRCm39 Ensembl GRCm38 4 133,584,373 - 133,591,735 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 133,584,362 - 133,591,735 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 133,140,288 - 133,147,650 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 132,856,456 - 132,863,810 (+) NCBI MGSCv36 mm8 MGSCv36 4 131,152,460 - 131,159,814 (+) NCBI MGSCv36 mm8 Celera 4 131,745,277 - 131,755,807 (+) NCBI Celera Cytogenetic Map 4 D2.3 NCBI cM Map 4 66.25 NCBI
Gpn2 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955452 6,227,126 - 6,234,143 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955452 6,227,126 - 6,234,143 (-) NCBI ChiLan1.0 ChiLan1.0
GPN2 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 199,979,741 - 199,990,731 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 199,083,722 - 199,094,839 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 26,141,959 - 26,152,948 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 27,198,382 - 27,209,795 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 27,198,382 - 27,209,795 (-) Ensembl panpan1.1 panPan2
GPN2 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 2 73,251,139 - 73,261,806 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 2 73,251,303 - 73,259,636 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 2 69,829,145 - 69,839,847 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 73,814,872 - 73,825,579 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 73,814,881 - 73,825,574 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 70,639,859 - 70,650,561 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 71,645,290 - 71,655,987 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 72,648,481 - 72,659,177 (+) NCBI UU_Cfam_GSD_1.0
Gpn2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 45,465,175 - 45,473,657 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936474 11,290,998 - 11,298,627 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936474 11,291,093 - 11,298,520 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GPN2 (Sus scrofa - pig)
GPN2 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 105,873,376 - 105,884,304 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 105,873,666 - 105,884,572 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666033 10,545,657 - 10,556,677 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gpn2 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 67 Count of miRNA genes: 62 Interacting mature miRNAs: 65 Transcripts: ENSRNOT00000009275 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
1331796 Thshl2 Thyroid stimulating hormone level QTL 2 2.3 blood thyroid-stimulating hormone amount (VT:0005119) serum thyroid stimulating hormone level (CMO:0001248) 5 97059760 147465714 Rat 10053720 Scort26 Serum corticosterone level QTL 26 2.06 0.0147 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 5 124965598 166875058 Rat 1549845 Scl44 Serum cholesterol level QTL 44 6 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 5 40128307 148607290 Rat 8552960 Pigfal15 Plasma insulin-like growth factor 1 level QTL 15 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 5 111416838 156416838 Rat 2302369 Scl60 Serum cholesterol level QTL 60 3.13 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 5 143608201 161165651 Rat 631562 Apr2 Acute phase response QTL 2 3.7 blood murinoglobulin 1 amount (VT:0010597) plasma murinoglobulin 1 level (CMO:0001931) 5 135927956 166875058 Rat 61444 Strs2 Sensitivity to stroke QTL 2 4.7 cerebrum integrity trait (VT:0010549) post-insult time to onset of cerebrovascular lesion (CMO:0002343) 5 135929696 166875058 Rat 1300119 Bp180 Blood pressure QTL 180 3.82 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 5 144358090 157869054 Rat 70156 Niddm30 Non-insulin dependent diabetes mellitus QTL 30 3.98 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 5 129132447 151006154 Rat 8552908 Pigfal4 Plasma insulin-like growth factor 1 level QTL 4 6.6 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 5 128506074 166875058 Rat 61393 Bp7 Blood pressure QTL 7 4.5 0.0001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 5 60293434 161481680 Rat 7794791 Mcs33 Mammary carcinoma susceptibility QTL 33 1.93 mammary gland integrity trait (VT:0010552) mammary tumor incidence/prevalence measurement (CMO:0000946) 5 131345754 166875058 Rat 7207486 Bss109 Bone structure and strength QTL 109 femur strength trait (VT:0010010) femur total energy absorbed before break (CMO:0001677) 5 106906205 151906205 Rat 7207481 Bss106 Bone structure and strength QTL 106 7.9 femur strength trait (VT:0010010) femur ultimate force (CMO:0001675) 5 106906205 151906205 Rat 1302790 Scl20 Serum cholesterol level QTL 20 6.4 0.0001 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 5 82394392 166664054 Rat 1598861 Cm64 Cardiac mass QTL 64 2.9 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 5 127798274 166875058 Rat 1578766 Tcas11 Tongue tumor susceptibility QTL 11 4.12 tongue integrity trait (VT:0010553) number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) 5 46711509 161317411 Rat 631263 Cm24 Cardiac mass QTL 24 3.5 heart mass (VT:0007028) heart left ventricle weight to body weight ratio (CMO:0000530) 5 143799107 158428037 Rat 631505 Bp103 Blood pressure QTL 103 3.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 5 132717196 165560427 Rat 1549838 Bss4 Bone structure and strength QTL 4 9.2 femur strength trait (VT:0010010) femur midshaft polar moment of inertia (CMO:0001669) 5 106906205 151906205 Rat 1641920 Colcs1 Colorectal carcinoma susceptibility QTL 1 2.99 0.0055 intestine integrity trait (VT:0010554) benign colorectal tumor surface area measurement (CMO:0001799) 5 121846814 166846814 Rat 8694169 Bw148 Body weight QTL 148 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 5 128506074 166875058 Rat 1331721 Bp210 Blood pressure QTL 210 3.413 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 5 143069996 166846814 Rat 8657050 Bw146 Body weight QTL 146 19.84 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 5 108938288 153938288 Rat 1576314 Eutr1 Estrogen induced uterine response QTL 1 uterus integrity trait (VT:0010575) pyometritis severity score (CMO:0002009) 5 2138965 166875058 Rat 2317056 Wbc3 White blood cell count QTL 3 2.51 0.01 leukocyte quantity (VT:0000217) white blood cell count (CMO:0000027) 5 105999803 150999803 Rat 634349 Bp139 Blood pressure QTL 139 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 5 128924607 166875058 Rat 724525 Bp147 Blood pressure QTL 147 4.3 0.0001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 5 126424772 166875058 Rat 1598847 Cm62 Cardiac mass QTL 62 3.4 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 5 108845856 153845856 Rat 2293642 Bss37 Bone structure and strength QTL 37 4.64 0.0001 femur strength trait (VT:0010010) femur ultimate force (CMO:0001675) 5 120740824 151018848 Rat 1578673 Bmd13 Bone mineral density QTL 13 4.9 femur mineral mass (VT:0010011) trabecular volumetric bone mineral density (CMO:0001729) 5 103689353 148689353 Rat 738018 Anxrr4 Anxiety related response QTL 4 5.1 exploratory behavior trait (VT:0010471) percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) 5 130130159 166875058 Rat 2313096 Bmd78 Bone mineral density QTL 78 3.1 0.0001 tibia mineral mass (VT:1000283) total volumetric bone mineral density (CMO:0001728) 5 144377876 161317411 Rat 7207488 Bss110 Bone structure and strength QTL 1 8.4 femur strength trait (VT:0010010) femur stiffness (CMO:0001674) 5 106906205 151906205 Rat 8694441 Bw169 Body weight QTL 169 17.61 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 5 111416838 156416838 Rat 7207491 Bss112 Bone structure and strength QTL 112 7 femur morphology trait (VT:0000559) femur midshaft cortical cross-sectional area (CMO:0001663) 5 106906205 151906205 Rat 8694389 Bw160 Body weight QTL 160 6.17 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 5 111416838 156416838 Rat 1354598 Srn6 Serum renin concentration QTL 6 3.8 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 5 69540295 151018848 Rat 8694198 Abfw3 Abdominal fat weight QTL 3 16.13 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 5 111416838 156416838 Rat 1298089 Scl14 Serum cholesterol level QTL 14 5.8 0.0004 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 5 108845856 153845856 Rat 1598819 Bp292 Blood pressure QTL 292 4.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 5 127798274 166875058 Rat 1358187 Emca1 Estrogen-induced mammary cancer QTL 1 4.4 mammary gland integrity trait (VT:0010552) post-insult time to mammary tumor formation (CMO:0000345) 5 99216724 148607142 Rat
RH144650
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 5 145,809,668 - 145,809,839 (+) MAPPER mRatBN7.2 Rnor_6.0 5 151,806,373 - 151,806,543 NCBI Rnor6.0 Rnor_5.0 5 155,495,753 - 155,495,923 UniSTS Rnor5.0 RGSC_v3.4 5 151,497,274 - 151,497,444 UniSTS RGSC3.4 Celera 5 144,230,226 - 144,230,396 UniSTS RH 3.4 Map 5 977.8 UniSTS Cytogenetic Map 5 q36 UniSTS
MARC_4337-4338:996679555:1
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 5 145,810,061 - 145,811,119 (+) MAPPER mRatBN7.2 Rnor_6.0 5 151,806,766 - 151,807,821 NCBI Rnor6.0 Rnor_5.0 5 155,496,146 - 155,497,201 UniSTS Rnor5.0 RGSC_v3.4 5 151,495,996 - 151,497,051 UniSTS RGSC3.4 Celera 5 144,230,619 - 144,231,660 UniSTS Cytogenetic Map 5 q36 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000009275 ⟹ ENSRNOP00000009275
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 5 145,809,651 - 145,817,252 (+) Ensembl Rnor_6.0 Ensembl 5 151,806,458 - 151,813,954 (+) Ensembl
RefSeq Acc Id:
NM_001270959 ⟹ NP_001257888
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 5 151,093,617 - 151,101,114 (+) NCBI mRatBN7.2 5 145,809,754 - 145,817,252 (+) NCBI Rnor_6.0 5 151,806,458 - 151,813,954 (+) NCBI Rnor_5.0 5 155,495,838 - 155,503,334 (+) NCBI Celera 5 144,230,311 - 144,237,793 (+) NCBI
Sequence:
ATGGCGGGGGCCGCCCCGACTACAGCCTTCGGGCAGGCTGTGATCGGGCCCCCGGGCTCAGGGAAAACTACGTACTGCCTGGGCATGAGTGAGTTCCTGCGCGCGCTGGGGCGGCGCGTGGCGGTGGT GAACCTGGACCCAGCTAACGAAGGACTGCCTTATGAATGTGCCGTGGACGTGGGCGAGCTGGTGGGTCTGGGCGACGTAATGGACGCGCTGCGCCTTGGGCCCAACGGTGGCCTGCTCTACTGCATGG AGTACCTGGAAGCTAACCTAGACTGGCTGCGCGCGAAGCTGGAGCCCCTGCGAGGCCACTACTTTCTCTTCGACTGCCCCGGACAAGTGGAGCTCTGCACGCACCACACCTCCCTACGCAGCATCTTC TCCCAGATGGCTCAGTGGGACCTGAGGTTGACTGCTGTTCACCTTGTGGATTCTCACTACTGTACAGACCCAGCCAAGTTCATCTCAGTACTGTGTACCTCCCTGGCCACCATGCTGCATGTGGAACT GCCCCATGTCAACCTCCTCTCCAAGATGGACCTTATTGAACACTATGGGAAGCTGGCCTTCAACCTGGACTACTACACTGAAGTCCTGGACCTCTCCTACCTGCTTGACCACCTGGCATCCGACCCTT TCTTCAGTCACTACCGACAGCTCAATGAGAAGCTAGTGCAGCTCATCGAGGACTACAGCCTGGTCTCCTTCATCCCACTGAACATCCAGGACAAGGACAGCATCCAGCGAGTCTTACAGGCTGTGGAT AAAGCCAATGGCTACTGCTTTGGGGTTCAAGAGCAGCGGAGTCTGGAAGCCCTGATGTCTGCAGCAGTGGGAGCTGACTTCCATTTCTCCTCCACCCTGGGCATCCAGGAAAAGTACTTAGCATCCTC GGACCAGACCGCAGAGCAGGAAGCCATGCAGCTGTAATATATGGGGCCTGGATCGCCGTGGACAGCTCAGCAGGGTATGGACCCAAAGCCATATCCAGCCAGAGCAGAGGCTGGAAGGGAACCACGGT CCCTGCAAAGGACTTCTGAATAAGAAGCCACACACAGCACCCTTTGTGGTGCCCATAAACTCAGGGCCCTGCCCCCAGGAGGTGGGGACCAAAGGTTGTGGAATAGCTCTCCTCGGGCTGCAGTGGAT GGGTGCGCTCTGACACAGGATTATTTTCTATTTTTTGTGACCTCAAACTTTCCTTCAACCCTATGGACCCAGGGACTCGGAGAACAAAGAAACATCTTTGTCCCTCCAAA
hide sequence
RefSeq Acc Id:
XM_039110392 ⟹ XP_038966320
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 5 151,093,279 - 151,101,114 (+) NCBI mRatBN7.2 5 145,809,455 - 145,817,252 (+) NCBI
RefSeq Acc Id:
NP_001257888 ⟸ NM_001270959
- UniProtKB:
D4A7C0 (UniProtKB/Swiss-Prot)
- Sequence:
MAGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLEPLRGHYFLFDCPGQVELCTHHTSLRSIF SQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHVNLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFSHYRQLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVD KANGYCFGVQEQRSLEALMSAAVGADFHFSSTLGIQEKYLASSDQTAEQEAMQL
hide sequence
Ensembl Acc Id:
ENSRNOP00000009275 ⟸ ENSRNOT00000009275
RefSeq Acc Id:
XP_038966320 ⟸ XM_039110392
- Peptide Label:
isoform X1
RGD ID: 13694119
Promoter ID: EPDNEW_R4644
Type: multiple initiation site
Name: Gpn2_1
Description: GPN-loop GTPase 2
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 5 151,806,365 - 151,806,425 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2008-05-19
Gpn2
GPN-loop GTPase 2
Atpbd1b
ATP binding domain 1 family, member B
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-04-30
Atpbd1b
ATP binding domain 1 family, member B
Atpbd1b_predicted
ATP binding domain 1 family, member B (predicted)
'predicted' is removed
2292626
APPROVED
2006-03-30
Atpbd1b_predicted
ATP binding domain 1 family, member B (predicted)
RGD1311749_predicted
similar to expressed sequence AI838661 (predicted)
Symbol and Name updated
1299863
APPROVED
2005-01-20
RGD1311749_predicted
similar to expressed sequence AI838661 (predicted)
LOC362614_predicted
Symbol and Name status set to approved
1331353
APPROVED
2005-01-12
LOC362614_predicted
similar to expressed sequence AI838661 (predicted)
Symbol and Name status set to provisional
70820
PROVISIONAL