Kif17 (kinesin family member 17) - Rat Genome Database

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Gene: Kif17 (kinesin family member 17) Rattus norvegicus
Analyze
Symbol: Kif17
Name: kinesin family member 17
RGD ID: 1562511
Description: Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Predicted to be involved in anterograde dendritic transport of neurotransmitter receptor complex and cell projection organization. Predicted to act upstream of or within microtubule-based process; protein-containing complex localization; and vesicle-mediated transport. Predicted to be located in cytoskeleton; periciliary membrane compartment; and photoreceptor connecting cilium. Predicted to be part of intraciliary transport particle B and kinesin complex. Predicted to be active in cilium; microtubule cytoskeleton; and neuron projection. Orthologous to human KIF17 (kinesin family member 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF17; LOC500571; RGD1562511; similar to MmKIF17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25150,482,288 - 150,521,471 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5150,481,578 - 150,519,638 (+)Ensembl
Rnor_6.05156,628,409 - 156,665,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,628,432 - 156,666,284 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,377,334 - 160,415,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,043,603 - 157,080,111 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5148,876,543 - 148,912,881 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10846156   PMID:17174564   PMID:19384852   PMID:22514311   PMID:23810713   PMID:25243405   PMID:26823018   PMID:35183034  


Genomics

Comparative Map Data
Kif17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25150,482,288 - 150,521,471 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5150,481,578 - 150,519,638 (+)Ensembl
Rnor_6.05156,628,409 - 156,665,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,628,432 - 156,666,284 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,377,334 - 160,415,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,043,603 - 157,080,111 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5148,876,543 - 148,912,881 (+)NCBICelera
Cytogenetic Map5q36NCBI
KIF17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,661,630 - 20,718,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl120,664,014 - 20,718,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37120,990,507 - 21,044,500 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,863,096 - 20,917,097 (-)NCBINCBI36hg18NCBI36
Build 34120,735,814 - 20,789,816NCBI
Celera119,316,276 - 19,370,087 (-)NCBI
Cytogenetic Map1p36.12NCBI
HuRef119,236,622 - 19,290,044 (-)NCBIHuRef
CHM1_1121,101,307 - 21,155,146 (-)NCBICHM1_1
T2T-CHM13v2.0120,490,201 - 20,544,577 (-)NCBI
Kif17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394137,989,562 - 138,029,284 (+)NCBIGRCm39mm39
GRCm39 Ensembl4137,977,746 - 138,029,278 (+)Ensembl
GRCm384138,262,251 - 138,301,973 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,250,435 - 138,301,967 (+)EnsemblGRCm38mm10GRCm38
MGSCv374137,818,166 - 137,857,407 (+)NCBIGRCm37mm9NCBIm37
MGSCv364137,534,327 - 137,573,568 (+)NCBImm8
Celera4140,040,684 - 140,081,652 (+)NCBICelera
Cytogenetic Map4D3NCBI
Kif17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554521,197,839 - 1,239,209 (-)NCBIChiLan1.0ChiLan1.0
KIF17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1120,656,440 - 20,711,288 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,658,870 - 20,711,288 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0119,611,573 - 19,666,698 (-)NCBIMhudiblu_PPA_v0panPan3
KIF17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,224,838 - 78,266,612 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,224,461 - 78,266,610 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,739,063 - 74,781,176 (+)NCBI
ROS_Cfam_1.0278,794,158 - 78,833,748 (+)NCBI
ROS_Cfam_1.0 Ensembl278,794,173 - 78,833,490 (+)Ensembl
UMICH_Zoey_3.1275,610,434 - 75,652,214 (+)NCBI
UNSW_CanFamBas_1.0276,623,212 - 76,664,018 (+)NCBI
UU_Cfam_GSD_1.0277,625,775 - 77,667,620 (+)NCBI
Kif17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,774,918 - 40,817,710 (-)NCBI
SpeTri2.0NW_0049364746,598,641 - 6,642,491 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120111,840,611 - 111,889,520 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20111,841,472 - 111,888,951 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660334,346,264 - 4,395,462 (-)NCBIVero_WHO_p1.0
Kif17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247645,682,829 - 5,724,656 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247645,682,800 - 5,724,852 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH144098  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,480,331 - 150,480,452 (+)MAPPERmRatBN7.2
Rnor_6.05156,626,238 - 156,626,358NCBIRnor6.0
Rnor_5.05160,375,720 - 160,375,840UniSTSRnor5.0
RGSC_v3.45157,041,204 - 157,041,324UniSTSRGSC3.4
Celera5148,874,014 - 148,874,134UniSTS
RH 3.4 Map51032.3UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:102
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000020215, ENSRNOT00000055910, ENSRNOT00000067117
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 7
Low 3 2 8 14 53 18 26 4
Below cutoff 37 39 31 5 31 4 6 20 15 8 7 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003750065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020215   ⟹   ENSRNOP00000020215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,481,578 - 150,519,638 (+)Ensembl
Rnor_6.0 Ensembl5156,628,432 - 156,666,284 (+)Ensembl
RefSeq Acc Id: XM_003750065   ⟹   XP_003750113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
Rnor_6.05156,628,409 - 156,665,752 (+)NCBI
Rnor_5.05160,377,334 - 160,415,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593855   ⟹   XP_017449344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
Rnor_6.05156,628,409 - 156,665,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111306   ⟹   XP_038967234
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111307   ⟹   XP_038967235
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111308   ⟹   XP_038967236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111309   ⟹   XP_038967237
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111310   ⟹   XP_038967238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111311   ⟹   XP_038967239
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111312   ⟹   XP_038967240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111313   ⟹   XP_038967241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XM_039111314   ⟹   XP_038967242
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,521,471 (+)NCBI
RefSeq Acc Id: XR_005505054
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,519,031 (+)NCBI
RefSeq Acc Id: XR_005505055
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,517,557 (+)NCBI
RefSeq Acc Id: XR_005505056
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,519,031 (+)NCBI
RefSeq Acc Id: XR_005505057
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,519,031 (+)NCBI
RefSeq Acc Id: XR_005505058
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,517,557 (+)NCBI
RefSeq Acc Id: XR_005505059
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,482,288 - 150,519,031 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003750113   ⟸   XM_003750065
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017449344   ⟸   XM_017593855
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000020215   ⟸   ENSRNOT00000020215
RefSeq Acc Id: XP_038967234   ⟸   XM_039111306
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967239   ⟸   XM_039111311
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038967237   ⟸   XM_039111309
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038967240   ⟸   XM_039111312
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038967236   ⟸   XM_039111308
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038967238   ⟸   XM_039111310
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038967235   ⟸   XM_039111307
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967241   ⟸   XM_039111313
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038967242   ⟸   XM_039111314
- Peptide Label: isoform X11

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYC9-F1-model_v2 AlphaFold D3ZYC9 1-1033 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694195
Promoter ID:EPDNEW_R4711
Type:single initiation site
Name:Kif17_1
Description:kinesin family member 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05156,628,370 - 156,628,430EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 156645672 156645673 C T snv ACI/EurMcwi (MCW), WN/N (2020), SR/JrHsd (MCW), ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), F344/NCrl (RGD), GK/Ox (RGD), LH/MavRrrc (RGD), MHS/Gib (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB31/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 160394602 160394603 C T snv ACI/EurMcwi (MCW), BDIX.Cg-Tal/NemOda (KyushuU), SR/JrHsd (MCW), WN/N (KNAW), LH/MavRrrc (KNAW), MHS/Gib (KNAW), SR/JrHsd (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), GK/Ox (KNAW), M520/N (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), COP/CrCrl (MCW & UW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562511 AgrOrtholog
BioCyc Gene G2FUF-39459 BioCyc
Ensembl Genes ENSRNOG00000014970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020215 ENTREZGENE
  ENSRNOP00000020215.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020215 ENTREZGENE
  ENSRNOT00000020215.6 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 500571 ENTREZGENE
PANTHER PTHR24115 UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PhenoGen Kif17 PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt D3ZYC9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-25 Kif17  kinesin family member 17  RGD1562511  similar to MmKIF17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562511  similar to MmKIF17   RGD1562511_predicted  similar to MmKIF17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562511_predicted  similar to MmKIF17 (predicted)  LOC500571  similar to MmKIF17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500571  similar to MmKIF17      Symbol and Name status set to provisional 70820 PROVISIONAL