Cfap57 (cilia and flagella associated protein 57) - Rat Genome Database

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Gene: Cfap57 (cilia and flagella associated protein 57) Rattus norvegicus
Analyze
Symbol: Cfap57
Name: cilia and flagella associated protein 57
RGD ID: 1585948
Description: Predicted to act upstream of or within axonemal dynein complex assembly; single fertilization; and sperm flagellum assembly. Predicted to be active in sperm flagellum. Human ortholog(s) of this gene implicated in spermatogenic failure 95. Orthologous to human CFAP57 (cilia and flagella associated protein 57); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilia- and flagella-associated protein 57; LOC679641; similar to CG4329-PA, isoform A; WD repeat domain 65-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,359,787 - 137,433,472 (-)NCBIGRCr8
mRatBN7.25132,074,404 - 132,148,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,074,395 - 132,148,462 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05137,383,065 - 137,458,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.05137,652,118 - 137,670,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,652,892 - 137,669,657 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,383,048 - 137,458,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,439,429 - 141,456,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05141,170,233 - 141,245,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,020,630 - 139,095,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,619,550 - 130,692,901 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cfap57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,359,787 - 137,433,472 (-)NCBIGRCr8
mRatBN7.25132,074,404 - 132,148,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,074,395 - 132,148,462 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05137,383,065 - 137,458,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.05137,652,118 - 137,670,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,652,892 - 137,669,657 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,383,048 - 137,458,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,439,429 - 141,456,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05141,170,233 - 141,245,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,020,630 - 139,095,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,619,550 - 130,692,901 (-)NCBICelera
Cytogenetic Map5q36NCBI
CFAP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,172,330 - 43,254,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,172,330 - 43,254,358 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,638,001 - 43,720,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,410,613 - 43,449,136 (+)NCBINCBI36Build 36hg18NCBI36
Celera141,920,109 - 41,958,656 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,757,760 - 41,839,789 (+)NCBIHuRef
CHM1_1143,754,465 - 43,836,515 (+)NCBICHM1_1
T2T-CHM13v2.0143,042,826 - 43,124,856 (+)NCBIT2T-CHM13v2.0
Cfap57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,411,747 - 118,477,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,411,748 - 118,477,974 (-)EnsemblGRCm39 Ensembl
GRCm384118,554,550 - 118,620,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,554,551 - 118,620,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,078,904 - 118,118,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,052,483 - 118,067,379 (-)NCBIMGSCv36mm8
Celera4117,272,730 - 117,339,038 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.84NCBI
Cfap57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,799,450 - 2,861,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,799,965 - 2,861,411 (+)NCBIChiLan1.0ChiLan1.0
CFAP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,555,688 - 183,640,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,691,118 - 182,782,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,470,987 - 42,556,101 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,848,111 - 43,933,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,848,369 - 43,933,279 (+)Ensemblpanpan1.1panPan2
CFAP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,903,470 - 16,977,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,903,470 - 16,977,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1517,031,467 - 17,105,537 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,100,632 - 17,159,837 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11516,863,661 - 16,937,788 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,932,621 - 17,006,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,006,223 - 17,080,296 (-)NCBIUU_Cfam_GSD_1.0
Cfap57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,596,152 - 24,647,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,595,224 - 24,647,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,550,902 - 89,625,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2089,551,069 - 89,625,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603327,293,179 - 27,369,532 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,520,261 - 2,590,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,520,205 - 2,590,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap57
381 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:58
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000009196
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128071929134724733Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat

Markers in Region
D5Got58  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25132,081,000 - 132,081,312 (+)MAPPERmRatBN7.2
Rnor_6.05137,389,672 - 137,389,983NCBIRnor6.0
Rnor_5.05141,176,837 - 141,177,148UniSTSRnor5.0
RGSC_v3.45139,027,075 - 139,027,387RGDRGSC3.4
RGSC_v3.45139,027,076 - 139,027,387UniSTSRGSC3.4
RGSC_v3.15139,032,301 - 139,032,613RGD
Celera5130,626,147 - 130,626,458UniSTS
RH 3.4 Map5863.9UniSTS
RH 3.4 Map5863.9RGD
RH 2.0 Map5858.9RGD
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
15 5 31 141 85 88 42 31 42 12 175 90 114 25 76 46

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5132,074,395 - 132,148,462 (-)Ensembl
Rnor_6.0 Ensembl5137,383,048 - 137,458,184 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5137,652,892 - 137,669,657 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5132,074,404 - 132,148,462 (-)Ensembl
Rnor_6.0 Ensembl5137,383,319 - 137,458,184 (-)Ensembl
RefSeq Acc Id: XM_008764092   ⟹   XP_008762314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85137,359,787 - 137,433,472 (-)NCBI
mRatBN7.25132,074,404 - 132,148,102 (-)NCBI
Rnor_6.05137,383,065 - 137,458,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593808   ⟹   XP_017449297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85137,359,787 - 137,433,472 (-)NCBI
mRatBN7.25132,074,404 - 132,148,102 (-)NCBI
Rnor_6.05137,383,065 - 137,458,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111195   ⟹   XP_038967123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85137,359,787 - 137,433,472 (-)NCBI
mRatBN7.25132,074,404 - 132,148,102 (-)NCBI
RefSeq Acc Id: XR_001838048
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85137,383,461 - 137,433,472 (-)NCBI
mRatBN7.25132,098,074 - 132,148,102 (-)NCBI
Rnor_6.05137,407,059 - 137,458,594 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010066613
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85137,368,672 - 137,433,472 (-)NCBI
RefSeq Acc Id: XP_008762314   ⟸   XM_008764092
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449297   ⟸   XM_017593808
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_038967123   ⟸   XM_039111195
- Peptide Label: isoform X2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585948 AgrOrtholog
BioCyc Gene G2FUF-40138 BioCyc
Ensembl Genes ENSRNOG00000007037 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000057360 Ensembl
Ensembl Transcript ENSRNOT00000009196.8 UniProtKB/TrEMBL
  ENSRNOT00000092775.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro CFA-57 UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:679641 UniProtKB/TrEMBL
NCBI Gene 679641 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Cfap57 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007037 RatGTEx
  ENSRNOG00000057360 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A8I6AFR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUB1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-11-07 Cfap57  cilia and flagella associated protein 57  LOC679641  similar to CG4329-PA, isoform A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 LOC679641  similar to CG4329-PA, isoform A  LOC100364818  WD repeat domain 65-like  Data merged from RGD:2320247 1643240 APPROVED
2010-05-05 LOC100364818  WD repeat domain 65-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC679641  similar to CG4329-PA, isoform A  LOC686155  similar to CG4329-PA, isoform A  Data merged from RGD:1585444 1643240 APPROVED
2006-11-19 LOC679641  similar to CG4329-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686155  similar to CG4329-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL