Cfap57 (cilia and flagella associated protein 57) - Rat Genome Database

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Gene: Cfap57 (cilia and flagella associated protein 57) Heterocephalus glaber
Analyze
Symbol: Cfap57
Name: cilia and flagella associated protein 57
RGD ID: 18902703
Description: INVOLVED IN axonemal dynein complex assembly (ortholog); cilium organization (ortholog); single fertilization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); glucose transporter type 1 deficiency syndrome 1 (ortholog); male infertility (ortholog); FOUND IN sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 57; WD repeat domain 65; Wdr65
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,520,261 - 2,590,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,520,205 - 2,590,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cfap57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,520,261 - 2,590,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,520,205 - 2,590,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CFAP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,172,330 - 43,254,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,172,330 - 43,254,358 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,638,001 - 43,720,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,410,613 - 43,449,136 (+)NCBINCBI36Build 36hg18NCBI36
Celera141,920,109 - 41,958,656 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,757,760 - 41,839,789 (+)NCBIHuRef
CHM1_1143,754,465 - 43,836,515 (+)NCBICHM1_1
T2T-CHM13v2.0143,042,826 - 43,124,856 (+)NCBIT2T-CHM13v2.0
Cfap57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,411,747 - 118,477,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,411,748 - 118,477,974 (-)EnsemblGRCm39 Ensembl
GRCm384118,554,550 - 118,620,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,554,551 - 118,620,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,078,904 - 118,118,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,052,483 - 118,067,379 (-)NCBIMGSCv36mm8
Celera4117,272,730 - 117,339,038 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.84NCBI
Cfap57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,359,787 - 137,433,472 (-)NCBIGRCr8
mRatBN7.25132,074,404 - 132,148,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,074,395 - 132,148,462 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05137,383,065 - 137,458,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.05137,652,118 - 137,670,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,652,892 - 137,669,657 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,383,048 - 137,458,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,439,429 - 141,456,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05141,170,233 - 141,245,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,020,630 - 139,095,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,619,550 - 130,692,901 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cfap57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,799,450 - 2,861,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,799,965 - 2,861,411 (+)NCBIChiLan1.0ChiLan1.0
CFAP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,555,688 - 183,640,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,691,118 - 182,782,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,470,987 - 42,556,101 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,848,111 - 43,933,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,848,369 - 43,933,279 (+)Ensemblpanpan1.1panPan2
CFAP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,903,470 - 16,977,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,903,470 - 16,977,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1517,031,467 - 17,105,537 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,100,632 - 17,159,837 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11516,863,661 - 16,937,788 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,932,621 - 17,006,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,006,223 - 17,080,296 (-)NCBIUU_Cfam_GSD_1.0
Cfap57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,771,356 - 58,832,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,596,152 - 24,647,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,595,224 - 24,647,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,550,902 - 89,625,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2089,551,069 - 89,625,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603327,293,179 - 27,369,532 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004074   ⟹   ENSHGLP00000004016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,520,261 - 2,590,471 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000004075   ⟹   ENSHGLP00000004017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,520,581 - 2,590,471 (+)Ensembl
RefSeq Acc Id: XM_013068188   ⟹   XP_012923642
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,218 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249894   ⟹   XP_021105553
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,218 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249895   ⟹   XP_021105554
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,338 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249897   ⟹   XP_021105556
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,205 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249898   ⟹   XP_021105557
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,270 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249899   ⟹   XP_021105558
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,218 - 2,590,380 (+)NCBI
RefSeq Acc Id: XM_021249900   ⟹   XP_021105559
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,218 - 2,573,747 (+)NCBI
RefSeq Acc Id: XM_021249901   ⟹   XP_021105560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,520,218 - 2,590,191 (+)NCBI
RefSeq Acc Id: XP_021105556   ⟸   XM_021249897
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021105553   ⟸   XM_021249894
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021105558   ⟸   XM_021249899
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012923642   ⟸   XM_013068188
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021105560   ⟸   XM_021249901
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021105559   ⟸   XM_021249900
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021105557   ⟸   XM_021249898
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021105554   ⟸   XM_021249895
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000004017   ⟸   ENSHGLT00000004075
Ensembl Acc Id: ENSHGLP00000004016   ⟸   ENSHGLT00000004074


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002959 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004074 ENTREZGENE
  ENSHGLT00000004075 ENTREZGENE
NCBI Gene Cfap57 ENTREZGENE