Advanced Search (OLGA)

Gene: Ifnlr1 (interferon, lambda receptor 1) Rattus norvegicus

Analyze

Symbol:

Ifnlr1

Name:

interferon, lambda receptor 1

RGD ID:

1562689

Description:

Predicted to enable cytokine receptor activity. Predicted to be involved in several processes, including mucosal immune response; positive regulation of cellular respiration; and regulation of defense response to virus by host. Predicted to act upstream of or within defense response to virus. Predicted to be located in membrane. Predicted to be part of interleukin-28 receptor complex. Predicted to be active in plasma membrane. Orthologous to human IFNLR1 (interferon lambda receptor 1); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (+)-schisandrin B; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Il28ra; interferon lambda receptor 1; interleukin 28 receptor alpha; interleukin-28 receptor subunit alpha; LOC362628; RGD1562689; similar to class II cytokine receptor 12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IFNLR1 (interferon lambda receptor 1)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ifnlr1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ifnlr1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IFNLR1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IFNLR1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ifnlr1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IFNLR1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IFNLR1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ifnlr1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ifnlr1 (interferon lambda receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	IFNLR1 (interferon lambda receptor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ifnlr1 (interferon lambda receptor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	crfb12 (cytokine receptor family member B12)	Alliance	DIOPT (OMA\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ifnlr1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,203,597 - 153,225,911 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,203,597 - 153,225,911 (+)	Ensembl				GRCr8
mRatBN7.2	5	147,919,547 - 147,942,328 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	147,919,908 - 147,942,332 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	150,623,176 - 150,642,937 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,393,679 - 152,413,614 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,379,464 - 152,399,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	152,828,670 - 152,850,852 (+)	NCBI
Lyon_Normotensive	5	154,817,471 - 154,839,781 (+)	NCBI
Lyon_Hypertensive	5	153,993,628 - 154,015,810 (+)	NCBI
F344_StmMcwi	5	147,565,464 - 147,587,646 (+)	NCBI
Rnor_6.0	5	154,037,243 - 154,058,862 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,037,202 - 154,058,880 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	5	157,802,698 - 157,824,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	154,461,523 - 154,480,844 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,330,038 - 146,349,359 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

cholangiocarcinoma (ISO)

esophageal cancer (ISO)

head and neck squamous cell carcinoma (ISO)

ovarian cancer (ISO)

ovarian serous cystadenocarcinoma (ISO)

psoriasis (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

uterine carcinosarcoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-D (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chlorpromazine (ISO)

choline (ISO)

cisplatin (ISO)

D-glucose (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

fructose (ISO)

gardiquimod (ISO)

glucose (ISO)

glyphosate (EXP,ISO)

L-methionine (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

paracetamol (EXP)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

poly(I:C) (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

protein kinase inhibitor (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytokine-mediated signaling pathway (IBA)

defense response to virus (IEA,ISO)

mucosal immune response (IEA,ISO)

positive regulation of cellular respiration (IEA,ISO)

regulation of defense response to virus by host (IEA,ISO)

Cellular Component

interleukin-28 receptor complex (IEA,ISO)

membrane (IEA)

plasma membrane (IBA)

Molecular Function

cytokine receptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

cytokine mediated signaling pathway (IEA)

Jak-Stat signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12469119	PMID:18250457	PMID:21518880

Genomics

Comparative Map Data

Ifnlr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,203,597 - 153,225,911 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,203,597 - 153,225,911 (+)	Ensembl				GRCr8
mRatBN7.2	5	147,919,547 - 147,942,328 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	147,919,908 - 147,942,332 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	150,623,176 - 150,642,937 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,393,679 - 152,413,614 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,379,464 - 152,399,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	152,828,670 - 152,850,852 (+)	NCBI
Lyon_Normotensive	5	154,817,471 - 154,839,781 (+)	NCBI
Lyon_Hypertensive	5	153,993,628 - 154,015,810 (+)	NCBI
F344_StmMcwi	5	147,565,464 - 147,587,646 (+)	NCBI
Rnor_6.0	5	154,037,243 - 154,058,862 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,037,202 - 154,058,880 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	5	157,802,698 - 157,824,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	154,461,523 - 154,480,844 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,330,038 - 146,349,359 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

IFNLR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	24,154,168 - 24,187,289 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	24,154,168 - 24,187,959 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	1	24,480,658 - 24,513,779 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	24,353,234 - 24,386,338 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	22,810,129 - 22,843,204 (-)	NCBI		Celera
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	22,733,625 - 22,766,711 (-)	NCBI		HuRef
CHM1_1	1	24,593,137 - 24,626,336 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	23,991,876 - 24,024,975 (-)	NCBI		T2T-CHM13v2.0

Ifnlr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	135,413,513 - 135,435,492 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	135,413,514 - 135,435,492 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	135,686,457 - 135,708,181 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	135,686,287 - 135,708,181 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	4	135,242,372 - 135,264,096 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	134,958,600 - 134,980,257 (+)	NCBI		MGSCv36	mm8
Celera	4	133,879,678 - 133,901,293 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	67.94	NCBI

Ifnlr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	4,003,244 - 4,028,189 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955452	4,002,389 - 4,028,193 (-)	NCBI	ChiLan1.0	ChiLan1.0

IFNLR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	202,743,306 - 202,775,329 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	201,846,800 - 201,878,767 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	23,355,986 - 23,389,467 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	24,335,259 - 24,368,299 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	24,335,259 - 24,368,299 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

IFNLR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	75,431,842 - 75,447,917 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	75,437,617 - 75,444,768 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	71,977,428 - 72,019,961 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	75,965,614 - 76,008,347 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	2	72,788,017 - 72,830,736 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	73,795,489 - 73,837,986 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	74,800,287 - 74,843,068 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ifnlr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	11	16,138,188 - 16,155,347 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024405058	43,382,695 - 43,396,170 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	9,209,815 - 9,220,670 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	9,209,815 - 9,220,670 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFNLR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	81,894,642 - 81,914,071 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	6	81,893,997 - 81,914,104 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	75,712,233 - 75,724,015 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IFNLR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	20	112,872,733 - 112,905,963 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666033	7,824,359 - 7,857,019 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	20	108,501,255 - 108,534,845 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	108,502,050 - 108,531,866 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Ifnlr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	8,637,741 - 8,660,982 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624764	8,637,359 - 8,647,443 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	7	25,609,463 - 25,631,496 (+)	Ensembl

Ifnlr1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	22,513,556 - 22,535,941 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in Ifnlr1
482 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	38
Interacting mature miRNAs:	42
Transcripts:	ENSRNOT00000049459
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

D5Wox2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	153,223,414 - 153,223,528 (+)	Marker Load Pipeline
mRatBN7.2	5	147,939,831 - 147,939,945 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	154,056,366 - 154,056,479	NCBI	Rnor6.0
Rnor_5.0	5	157,821,821 - 157,821,934	UniSTS	Rnor5.0
RGSC_v3.4	5	154,480,646 - 154,480,760	RGD	RGSC3.4
RGSC_v3.4	5	154,480,647 - 154,480,760	UniSTS	RGSC3.4
Celera	5	146,349,162 - 146,349,275	UniSTS
RGSC_v3.1	5	154,490,686 - 154,490,799	RGD
RH 3.4 Map	5	999.3	RGD
RH 3.4 Map	5	999.3	UniSTS
RH 2.0 Map	5	951.1	RGD
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
272	156	681	1589	3990	904	1620	133	767	391	749	156	5095	2483	435	3903	38	1354	738	908	160	158

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049459 ⟹ ENSRNOP00000048303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	153,203,597 - 153,225,911 (+)	Ensembl
mRatBN7.2 Ensembl	5	147,919,908 - 147,942,332 (+)	Ensembl
Rnor_6.0 Ensembl	5	154,037,202 - 154,058,880 (+)	Ensembl

RefSeq Acc Id:

NM_001191868 ⟹ NP_001178797

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,203,597 - 153,225,911 (+)	NCBI
mRatBN7.2	5	147,920,012 - 147,942,328 (+)	NCBI
Dahl_SR_JrHsd	5	152,828,670 - 152,850,852 (+)	NCBI
Lyon_Normotensive	5	154,817,471 - 154,839,781 (+)	NCBI
Lyon_Hypertensive	5	153,993,628 - 154,015,810 (+)	NCBI
F344_StmMcwi	5	147,565,464 - 147,587,646 (+)	NCBI
Rnor_6.0	5	154,037,243 - 154,056,563 (+)	NCBI
Rnor_5.0	5	157,802,698 - 157,824,317 (+)	NCBI
Celera	5	146,330,038 - 146,349,359 (+)	NCBI

Sequence:

show sequence

ATGTGGCGGGCTGGCCGGTGGGCGCCCCTACTCCTGTTCCTGATGCAAAGCGCCCTAGGAAGGC
CCCGTCTAGCCCCACCCAGAAACGTGACACTGCTCTCCCAGAATTTCACTGTTTACCTGACATG
GCTCCCAGGGCTAGGTAGCCCCCCGAATGTGACCTACTTTGTGACCTACAAAAGCTATAACAAT
CATTGGCGAAGAGTAGAGCATTGTGCGGGCATCAGTACTCTGGTGTGTCCCATGATGTGCCTGA
AGAAACAGGACCTGTACATCAAGTTCAAAGGTCGAGTACAGGCAGCTTCTGCCCATGTGAAGTC
CCCATGGGTGGAGTCCAGGTACCTGGAATACATTTTTGATGTGGAGCTAGCCCCACCCACCCTG
GTGCTCTCCCAGAAGGAGAAGATCCTAAATGTCAACGCTACCTACCAGCTGCCACCCTGCATGC
CTCGGTCACTGGAACTGAAGTACCAGGTGGAGTTCTGGAAGGAGGACCTGAGAAGCAAGACCCT
GTTTCCAGACACTCCATATGGCCAGCCAGTGAAGATTCCTCTCCAGCAAGATGCTCGTGGACGC
CACTGCTTCAGCGCCAGAACCGTCTATACCTTAACCCACACGAAGTACAGCCTGTTCTCTGAGC
CCAGCTGCATCTTCCTAGCGGCCCCAGGGGCCAACAGGGCTGTCCTGGCGGTGCCCTTACTCTT
GCTTCTACTGATAGCAGCGGCTGCAGCGGGTACGGCATGGAAGAAAATGGATGGGAACCCCTGG
TTTCAGTGGGTGAAGATGCCCCAGGCACTGGACTTTTCTGAAAACAGACACCCAGTGGCGACCT
TTCAGCCCAGTGGACCTGAGTTCTCAGGTGACTTGATCCTCTGTCCCCAGAAGGAACTGACCAT
AAGGACCAGACCAGTCCCTCGGGTCAGAGGCCCAGCCACACTGCAGGCAGGATCAGAAAAAGAC
AGTACTGAGGATGAAGACGAGGACACAGACGACGACGGTGACAGCATCCAGCCCTACCTGGAAC
GGCCCCTCTTCGTGAGGGAGAAGCTCCAGGTTACGGAGCACTCAGAGGCAGATGAATCTGGGGT
GGATTCAGTTGGGAGCGAAGGCTCGTCTGCATGGGACTCTTCAGGTGGGAGCTGGTCCAGCACA
GGGGTCTCCTCAGGGGACTCCTCTTATAAAGATGAAGCTGGATCTTCCAGCTGTTTGGACCAGA
AGAAGCCAGACCAGGAGCCTCATGGGGATGGGCACCAGGGGCCTCTCCCATGCCTGGAATTTTC
TGAGGACTTGGGCACTGTGGAAGAGCTTCTGAAAGATGACCTCTCCGGTTGGAGAATATGGGGT
ACCTTATCCCCAAAGAGAGATCTGGCTCCTGTGGAGCCCCCAGTTTCTCTTCAGACACTGACTT
TCTGCTGGGACAGCAATCCAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGA
GGAAGAGGAAGAAGACTGGGAATCAGACCTTAAGGACAGCAACACCAGCTGTTGGGATGCTTCA
AGCCCGCAGAGGACAGACGTCAGGGGTGGGATGCTGGGAGATTACATGGTCAGGTGA

hide sequence

RefSeq Acc Id:

XM_063288069 ⟹ XP_063144139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,215,659 - 153,225,911 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178797	(Get FASTA)	NCBI Sequence Viewer
	XP_063144139	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80763	(Get FASTA)	NCBI Sequence Viewer
	EDL80764	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048303
	ENSRNOP00000048303.4

RefSeq Acc Id:	NP_001178797 ⟸ NM_001191868
- Peptide Label:	precursor
- UniProtKB:	D3ZB58 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWRAGRWAPLLLFLMQSALGRPRLAPPRNVTLLSQNFTVYLTWLPGLGSPPNVTYFVTYKSYNN HWRRVEHCAGISTLVCPMMCLKKQDLYIKFKGRVQAASAHVKSPWVESRYLEYIFDVELAPPTL VLSQKEKILNVNATYQLPPCMPRSLELKYQVEFWKEDLRSKTLFPDTPYGQPVKIPLQQDARGR HCFSARTVYTLTHTKYSLFSEPSCIFLAAPGANRAVLAVPLLLLLLIAAAAAGTAWKKMDGNPW FQWVKMPQALDFSENRHPVATFQPSGPEFSGDLILCPQKELTIRTRPVPRVRGPATLQAGSEKD STEDEDEDTDDDGDSIQPYLERPLFVREKLQVTEHSEADESGVDSVGSEGSSAWDSSGGSWSST GVSSGDSSYKDEAGSSSCLDQKKPDQEPHGDGHQGPLPCLEFSEDLGTVEELLKDDLSGWRIWG TLSPKRDLAPVEPPVSLQTLTFCWDSNPEEEEEEEEEEEEEEEEEEEDWESDLKDSNTSCWDAS SPQRTDVRGGMLGDYMVR hide sequence

Ensembl Acc Id:

ENSRNOP00000048303 ⟸ ENSRNOT00000049459

RefSeq Acc Id:	XP_063144139 ⟸ XM_063288069
- Peptide Label:	isoform X1

Protein Domains

Fibronectin type-III

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZB58-F1-model_v2	AlphaFold	D3ZB58	1-530	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694156

Promoter ID:

EPDNEW_R4680

Type:

single initiation site

Name:

Ifnlr1_1

Description:

interferon, lambda receptor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	154,037,162 - 154,037,222	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562689	AgrOrtholog
BioCyc Gene	G2FUF-39535	BioCyc
Ensembl Genes	ENSRNOG00000033984	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000049459	ENTREZGENE
	ENSRNOT00000049459.7	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Type-II_Cytokine-TF_Rcpt	UniProtKB/TrEMBL
KEGG Report	rno:362628	UniProtKB/TrEMBL
NCBI Gene	362628	ENTREZGENE
PANTHER	INTERFERON LAMBDA RECEPTOR 1	UniProtKB/TrEMBL
	INTERFERON/INTERLEUKIN RECEPTOR	UniProtKB/TrEMBL
Pfam	Tissue_fac	UniProtKB/TrEMBL
PhenoGen	Ifnlr1	PhenoGen
PROSITE	FN3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000033984	RatGTEx
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
UniProt	D3ZB58	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-06	Ifnlr1	interferon, lambda receptor 1	Il28ra	interleukin 28 receptor alpha	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Il28ra	interleukin 28 receptor alpha	RGD1562689_predicted	similar to class II cytokine receptor 12 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562689_predicted	similar to class II cytokine receptor 12 (predicted)	LOC362628	similar to class II cytokine receptor 12	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362628	similar to class II cytokine receptor 12			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)