Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col9a2 (collagen type IX alpha 2 chain) Rattus norvegicus
Analyze
Symbol: Col9a2
Name: collagen type IX alpha 2 chain
RGD ID: 1307029
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to collagen type IX trimer; extracellular matrix; and extracellular space. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and osteochondrodysplasia. Orthologous to human COL9A2 (collagen type IX alpha 2 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alpha 1 type IX collagen; collagen alpha-2(IX) chain; collagen, type IX, alpha 2; LOC362584; procollagen, type IX, alpha 2
Orthologs:
Homo sapiens (human) : COL9A2 (collagen type IX alpha 2 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col9a2 (collagen, type IX, alpha 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col9a2 (collagen type IX alpha 2 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL9A2 (collagen type IX alpha 2 chain)
Canis lupus familiaris (dog) : COL9A2 (collagen type IX alpha 2 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col9a2 (collagen type IX alpha 2 chain)
Sus scrofa (pig) : COL9A2 (collagen type IX alpha 2 chain)
Chlorocebus sabaeus (African green monkey) : COL9A2 (collagen type IX alpha 2 chain)
Heterocephalus glaber (naked mole-rat) : Col9a2 (collagen type IX alpha 2 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05139,962,684 - 139,979,865 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,963,002 - 139,979,864 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,756,118 - 143,773,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,623,365 - 141,640,224 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15141,628,590 - 141,645,447 (+)NCBI
Celera5133,161,241 - 133,178,394 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col9a2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307029
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.