Bend5 (BEN domain containing 5) - Rat Genome Database

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Gene: Bend5 (BEN domain containing 5) Rattus norvegicus
Analyze
Symbol: Bend5
Name: BEN domain containing 5
RGD ID: 1584958
Description: Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in Golgi apparatus. Orthologous to human BEND5 (BEN domain containing 5); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BEN domain-containing protein 5; hypothetical LOC362564; LOC362564
RGD Orthologs
Human
Mouse
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85131,519,214 - 131,565,228 (+)NCBIGRCr8
mRatBN7.25126,290,648 - 126,336,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5125,254,956 - 126,534,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5128,945,420 - 128,991,409 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05130,668,505 - 130,714,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05130,696,701 - 130,742,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05131,257,127 - 131,312,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5131,257,127 - 131,312,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05135,084,714 - 135,138,954 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45132,955,337 - 133,001,386 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5124,998,399 - 125,044,805 (+)NCBICelera
Cytogenetic Map5q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17662146   PMID:23468431  


Genomics

Comparative Map Data
Bend5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85131,519,214 - 131,565,228 (+)NCBIGRCr8
mRatBN7.25126,290,648 - 126,336,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5125,254,956 - 126,534,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5128,945,420 - 128,991,409 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05130,668,505 - 130,714,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05130,696,701 - 130,742,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05131,257,127 - 131,312,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5131,257,127 - 131,312,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05135,084,714 - 135,138,954 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45132,955,337 - 133,001,386 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5124,998,399 - 125,044,805 (+)NCBICelera
Cytogenetic Map5q35NCBI
BEND5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38148,727,519 - 48,776,891 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl148,727,519 - 48,776,969 (-)EnsemblGRCh38hg38GRCh38
GRCh37149,193,191 - 49,242,563 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36148,966,129 - 49,015,090 (-)NCBINCBI36Build 36hg18NCBI36
Celera147,479,547 - 47,528,540 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef147,312,301 - 47,361,290 (-)NCBIHuRef
CHM1_1149,310,492 - 49,359,503 (-)NCBICHM1_1
T2T-CHM13v2.0148,606,260 - 48,655,642 (-)NCBIT2T-CHM13v2.0
Bend5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394111,271,993 - 111,317,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4111,272,203 - 111,317,495 (+)EnsemblGRCm39 Ensembl
GRCm384111,413,794 - 111,460,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4111,415,006 - 111,460,298 (+)EnsemblGRCm38mm10GRCm38
MGSCv374111,087,611 - 111,132,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364110,912,938 - 110,957,857 (+)NCBIMGSCv36mm8
Celera4109,747,988 - 109,793,433 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map451.53NCBI
Bend5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554649,952,128 - 9,999,732 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554649,952,128 - 9,997,938 (+)NCBIChiLan1.0ChiLan1.0
LOC101957772
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505863,573,607 - 64,269,801 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647429,599,327 - 29,647,228 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647429,600,130 - 29,647,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BEND5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6162,964,216 - 163,011,583 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16162,964,176 - 163,011,225 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BEND5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12084,054,527 - 84,103,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2084,054,586 - 84,104,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603333,027,291 - 33,079,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bend5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248594,156,230 - 4,204,917 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248594,113,366 - 4,204,011 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bend5
236 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:311
Count of miRNA genes:200
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000010628
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat

Markers in Region
BE110236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25126,206,402 - 126,206,554 (+)MAPPERmRatBN7.2
Rnor_6.05131,173,147 - 131,173,298NCBIRnor6.0
Rnor_5.05135,000,798 - 135,000,949UniSTSRnor5.0
RGSC_v3.45132,869,270 - 132,869,421UniSTSRGSC3.4
Celera5124,914,680 - 124,914,831UniSTS
RH 3.4 Map5821.5UniSTS
Cytogenetic Map5q35UniSTS
BF398772  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25126,296,801 - 126,296,921 (+)MAPPERmRatBN7.2
Rnor_6.05131,263,281 - 131,263,400NCBIRnor6.0
Rnor_5.05135,090,868 - 135,090,987UniSTSRnor5.0
RGSC_v3.45132,961,491 - 132,961,610UniSTSRGSC3.4
Celera5125,004,553 - 125,004,672UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map5q35UniSTS
AU049333  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25126,296,934 - 126,297,064 (+)MAPPERmRatBN7.2
Rnor_6.05131,263,414 - 131,263,543NCBIRnor6.0
Rnor_5.05135,091,001 - 135,091,130UniSTSRnor5.0
RGSC_v3.45132,961,624 - 132,961,753UniSTSRGSC3.4
Celera5125,004,686 - 125,004,869UniSTS
Cytogenetic Map5q35UniSTS
C1orf165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25126,329,451 - 126,329,568 (+)MAPPERmRatBN7.2
Rnor_6.05131,305,125 - 131,305,241NCBIRnor6.0
Rnor_5.05135,131,744 - 135,131,860UniSTSRnor5.0
RGSC_v3.45132,994,176 - 132,994,292UniSTSRGSC3.4
Celera5125,037,606 - 125,037,722UniSTS
Cytogenetic Map5q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 11 61 35 28 2
Low 1 43 36 20 8 20 2 2 13 13 9 2
Below cutoff 20 20 20 6 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010548   ⟹   ENSRNOP00000010548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,254,956 - 126,528,370 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000010628   ⟹   ENSRNOP00000010628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5126,290,648 - 126,336,662 (+)Ensembl
Rnor_6.0 Ensembl5131,257,127 - 131,312,335 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000044795   ⟹   ENSRNOP00000047761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,341,986 - 125,361,474 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097800   ⟹   ENSRNOP00000088189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,254,956 - 125,780,308 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110652   ⟹   ENSRNOP00000095635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,254,956 - 126,437,854 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111569   ⟹   ENSRNOP00000089080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,255,006 - 125,498,273 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112364   ⟹   ENSRNOP00000096707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,254,956 - 126,336,662 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115129   ⟹   ENSRNOP00000083032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5126,326,704 - 126,336,662 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117438   ⟹   ENSRNOP00000097591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5125,254,956 - 126,534,367 (+)Ensembl
RefSeq Acc Id: NM_001108672   ⟹   NP_001102142
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85131,519,214 - 131,565,228 (+)NCBI
mRatBN7.25126,290,648 - 126,336,662 (+)NCBI
Rnor_6.05131,257,127 - 131,312,335 (+)NCBI
Rnor_5.05135,084,714 - 135,138,954 (+)NCBI
RGSC_v3.45132,955,337 - 133,001,386 (+)RGD
Celera5124,998,399 - 125,044,805 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001102142   ⟸   NM_001108672
- UniProtKB: D3ZQP2 (UniProtKB/TrEMBL),   A6JZ07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010628   ⟸   ENSRNOT00000010628
RefSeq Acc Id: ENSRNOP00000095635   ⟸   ENSRNOT00000110652
RefSeq Acc Id: ENSRNOP00000088189   ⟸   ENSRNOT00000097800
RefSeq Acc Id: ENSRNOP00000096707   ⟸   ENSRNOT00000112364
RefSeq Acc Id: ENSRNOP00000097591   ⟸   ENSRNOT00000117438
RefSeq Acc Id: ENSRNOP00000089080   ⟸   ENSRNOT00000111569
RefSeq Acc Id: ENSRNOP00000010548   ⟸   ENSRNOT00000010548
RefSeq Acc Id: ENSRNOP00000047761   ⟸   ENSRNOT00000044795
RefSeq Acc Id: ENSRNOP00000083032   ⟸   ENSRNOT00000115129
Protein Domains
BEN   Cytosolic carboxypeptidase N-terminal   DUF1725   Peptidase M14 carboxypeptidase A

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQP2-F1-model_v2 AlphaFold D3ZQP2 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584958 AgrOrtholog
BioCyc Gene G2FUF-40339 BioCyc
Ensembl Genes ENSRNOG00000008025 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010548.8 UniProtKB/TrEMBL
  ENSRNOT00000010628 ENTREZGENE
  ENSRNOT00000010628.7 UniProtKB/TrEMBL
  ENSRNOT00000044795.2 UniProtKB/TrEMBL
  ENSRNOT00000097800.1 UniProtKB/TrEMBL
  ENSRNOT00000110652.1 UniProtKB/TrEMBL
  ENSRNOT00000111569.1 UniProtKB/TrEMBL
  ENSRNOT00000112364.1 UniProtKB/TrEMBL
  ENSRNOT00000115129.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.3120 UniProtKB/TrEMBL
  BEN domain UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro BEN_domain UniProtKB/TrEMBL
  BEND5 UniProtKB/TrEMBL
  DUF1725 UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
KEGG Report rno:362564 UniProtKB/TrEMBL
NCBI Gene 362564 ENTREZGENE
PANTHER BEN DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE 6 UniProtKB/TrEMBL
  PTHR14628 UniProtKB/TrEMBL
Pfam BEN UniProtKB/TrEMBL
  DUF1725 UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
PhenoGen Bend5 PhenoGen
PROSITE BEN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008025 RatGTEx
SMART BEN UniProtKB/TrEMBL
  Zn_pept UniProtKB/TrEMBL
Superfamily-SCOP Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A8I5ZW44_RAT UniProtKB/TrEMBL
  A0A8I6A9E9_RAT UniProtKB/TrEMBL
  A0A8I6A9H8_RAT UniProtKB/TrEMBL
  A0A8I6AP52_RAT UniProtKB/TrEMBL
  A0A8I6GM74_RAT UniProtKB/TrEMBL
  A6JZ07 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQP2 ENTREZGENE, UniProtKB/TrEMBL
  F1LYK5_RAT UniProtKB/TrEMBL
  Q6TUF5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-11 Bend5  BEN domain containing 5  LOC362564  hypothetical LOC362564  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC362564  hypothetical LOC362564      Symbol and Name status set to provisional 70820 PROVISIONAL