Epb41 (erythrocyte membrane protein band 4.1) - Rat Genome Database

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Gene: Epb41 (erythrocyte membrane protein band 4.1) Rattus norvegicus
Analyze
Symbol: Epb41
Name: erythrocyte membrane protein band 4.1
RGD ID: 1564762
Description: Enables actin binding activity and spectrin binding activity. Involved in protein-containing complex assembly. Located in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in hereditary elliptocytosis. Orthologous to human EPB41 (erythrocyte membrane protein band 4.1); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atorvastatin calcium; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Epb4.1; erythrocyte protein band 4.1; LOC313052; protein 4.1; RGD1564762; similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85149,394,080 - 149,548,178 (-)NCBIGRCr8
mRatBN7.25144,110,010 - 144,264,037 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5146,815,209 - 146,943,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05148,585,056 - 148,712,944 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05148,573,947 - 148,701,609 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,081,727 - 150,243,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05153,760,449 - 153,919,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45150,782,245 - 150,908,888 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5142,553,286 - 142,705,904 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-hexachlorocyclohexane  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
cholesterol  (EXP)
chromium(6+)  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
Diisodecyl phthalate  (ISO)
diuron  (ISO)
flutamide  (EXP)
FR900359  (ISO)
gallic acid  (ISO)
genistein  (ISO)
hydrogen peroxide  (EXP)
inulin  (ISO)
lead(0)  (ISO)
maneb  (ISO)
methidathion  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Association between myeloid malignancies and acquired deficit in protein 4.1R: a retrospective analysis of six patients. Alanio-Brechot C, etal., Am J Hematol. 2008 Apr;83(4):275-8.
2. Homozygous 4.1(-) hereditary elliptocytosis associated with a point mutation in the downstream initiation codon of protein 4.1 gene. Dalla Venezia N, etal., J Clin Invest. 1992 Nov;90(5):1713-7.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. The prototypical 4.1R-10-kDa domain and the 4.1g-10-kDa paralog mediate fodrin-actin complex formation. Kontrogianni-Konstantopoulos A, etal., J Biol Chem. 2001 Jun 8;276(23):20679-87. Epub 2001 Mar 23.
5. Paranodin, a glycoprotein of neuronal paranodal membranes. Menegoz M, etal., Neuron 1997 Aug;19(2):319-31.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. The giant spectrin betaV couples the molecular motors to phototransduction and Usher syndrome type I proteins along their trafficking route. Papal S, etal., Hum Mol Genet. 2013 Sep 15;22(18):3773-88. doi: 10.1093/hmg/ddt228. Epub 2013 May 23.
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Protein 4.1 in forebrain postsynaptic density preparations: enrichment of 4.1 gene products and detection of 4.1R binding proteins. Scott C, etal., Eur J Biochem. 2001 Feb;268(4):1084-94.
14. Protein 4.1R-deficient mice are viable but have erythroid membrane skeleton abnormalities. Shi ZT, etal., J Clin Invest. 1999 Feb;103(3):331-40.
15. Immunolocalization of protein 4.1B in the rat digestive system. Terada N, etal., J Mol Histol. 2004 May;35(4):347-53.
16. Neurobehavioral deficits in mice lacking the erythrocyte membrane cytoskeletal protein 4.1. Walensky LD, etal., Curr Biol. 1998 Nov 19;8(23):1269-72.
Additional References at PubMed
PMID:3693401   PMID:6894932   PMID:12477932   PMID:16060676   PMID:16254212   PMID:16669616   PMID:18723693   PMID:20109190   PMID:20585040   PMID:23460639   PMID:23870127   PMID:35352799  


Genomics

Comparative Map Data
Epb41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85149,394,080 - 149,548,178 (-)NCBIGRCr8
mRatBN7.25144,110,010 - 144,264,037 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5146,815,209 - 146,943,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05148,585,056 - 148,712,944 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05148,573,947 - 148,701,609 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,081,727 - 150,243,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05153,760,449 - 153,919,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45150,782,245 - 150,908,888 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5142,553,286 - 142,705,904 (-)NCBICelera
Cytogenetic Map5q36NCBI
EPB41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,887,100 - 29,120,041 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,887,091 - 29,120,046 (+)EnsemblGRCh38hg38GRCh38
GRCh37129,213,612 - 29,446,553 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36129,086,215 - 29,319,545 (+)NCBINCBI36Build 36hg18NCBI36
Celera127,609,687 - 27,842,706 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef127,466,104 - 27,698,673 (+)NCBIHuRef
CHM1_1129,328,966 - 29,561,931 (+)NCBICHM1_1
T2T-CHM13v2.0128,729,007 - 28,962,697 (+)NCBIT2T-CHM13v2.0
Epb41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394131,650,724 - 131,802,824 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4131,650,724 - 131,802,632 (-)EnsemblGRCm39 Ensembl
GRCm384131,923,413 - 132,075,346 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4131,923,413 - 132,075,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv374131,479,328 - 131,631,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,196,360 - 131,344,173 (-)NCBIMGSCv36mm8
Celera4130,083,954 - 130,236,196 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map464.54NCBI
Epb41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554528,009,194 - 8,124,713 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,930,095 - 8,123,165 (+)NCBIChiLan1.0ChiLan1.0
EPB41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21197,723,248 - 197,954,984 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,842,522 - 197,047,666 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,158,807 - 28,390,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1129,186,202 - 29,416,495 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl129,284,923 - 29,416,474 (+)Ensemblpanpan1.1panPan2
EPB41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,474,916 - 71,673,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,474,954 - 71,584,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,051,718 - 68,160,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,034,545 - 72,232,624 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,032,484 - 72,212,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1268,864,384 - 68,973,060 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0269,871,948 - 69,980,550 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0270,869,968 - 70,978,583 (-)NCBIUU_Cfam_GSD_1.0
Epb41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505847,092,095 - 47,265,131 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,991,737 - 13,090,615 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,917,009 - 13,090,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,865,277 - 86,029,508 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,842,538 - 86,029,522 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2679,809,404 - 79,916,611 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120103,704,322 - 103,928,004 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20103,699,694 - 103,927,730 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603312,597,213 - 12,828,450 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476412,770,814 - 12,892,540 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476412,692,114 - 12,896,252 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epb41
909 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:932
Count of miRNA genes:166
Interacting mature miRNAs:203
Transcripts:ENSRNOT00000013761, ENSRNOT00000051097, ENSRNOT00000067189, ENSRNOT00000067349
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat

Markers in Region
RH142473  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,148,694 - 144,148,797 (+)MAPPERmRatBN7.2
Rnor_6.05150,120,661 - 150,120,763NCBIRnor6.0
Rnor_5.05153,799,383 - 153,799,485UniSTSRnor5.0
RGSC_v3.45150,819,153 - 150,819,255UniSTSRGSC3.4
Celera5142,591,965 - 142,592,067UniSTS
Cytogenetic Map5q36UniSTS
RH144386  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,135,928 - 144,136,036 (+)MAPPERmRatBN7.2
Rnor_6.05150,107,896 - 150,108,003NCBIRnor6.0
Rnor_5.05153,786,618 - 153,786,725UniSTSRnor5.0
RGSC_v3.45150,806,388 - 150,806,495UniSTSRGSC3.4
Celera5142,579,157 - 142,579,264UniSTS
RH 3.4 Map5978.6UniSTS
Cytogenetic Map5q36UniSTS
BE103841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,129,694 - 144,129,891 (+)MAPPERmRatBN7.2
Rnor_6.05150,101,411 - 150,101,607NCBIRnor6.0
Rnor_5.05153,780,133 - 153,780,329UniSTSRnor5.0
RGSC_v3.45150,800,154 - 150,800,350UniSTSRGSC3.4
Celera5142,572,930 - 142,573,126UniSTS
RH 3.4 Map5978.4UniSTS
Cytogenetic Map5q36UniSTS
BF389762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,144,449 - 144,144,661 (+)MAPPERmRatBN7.2
Rnor_6.05150,116,416 - 150,116,627NCBIRnor6.0
Rnor_5.05153,795,138 - 153,795,349UniSTSRnor5.0
RGSC_v3.45150,814,908 - 150,815,119UniSTSRGSC3.4
Celera5142,587,720 - 142,587,931UniSTS
RH 3.4 Map5964.8UniSTS
Cytogenetic Map5q36UniSTS
AW534429  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,258,748 - 144,258,911 (+)MAPPERmRatBN7.2
Rnor_6.05150,237,931 - 150,238,093NCBIRnor6.0
Rnor_5.05153,914,585 - 153,914,747UniSTSRnor5.0
RGSC_v3.45150,929,539 - 150,929,701UniSTSRGSC3.4
Celera5142,700,649 - 142,700,811UniSTS
RH 3.4 Map5966.3UniSTS
Cytogenetic Map5q36UniSTS
RH137416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,126,782 - 144,126,983 (+)MAPPERmRatBN7.2
Rnor_6.05150,098,500 - 150,098,700NCBIRnor6.0
Rnor_5.05153,777,222 - 153,777,422UniSTSRnor5.0
RGSC_v3.45150,797,243 - 150,797,443UniSTSRGSC3.4
Celera5142,570,058 - 142,570,258UniSTS
RH 3.4 Map5978.4UniSTS
Cytogenetic Map5q36UniSTS
RH137604  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,123,781 - 144,123,921 (+)MAPPERmRatBN7.2
Rnor_6.05150,095,499 - 150,095,638NCBIRnor6.0
Rnor_5.05153,774,221 - 153,774,360UniSTSRnor5.0
RGSC_v3.45150,794,242 - 150,794,381UniSTSRGSC3.4
Celera5142,567,057 - 142,567,196UniSTS
Cytogenetic Map5q36UniSTS
RH140190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,139,146 - 144,139,324 (+)MAPPERmRatBN7.2
Rnor_6.05150,111,113 - 150,111,290NCBIRnor6.0
Rnor_5.05153,789,835 - 153,790,012UniSTSRnor5.0
RGSC_v3.45150,809,605 - 150,809,782UniSTSRGSC3.4
Celera5142,582,417 - 142,582,594UniSTS
Cytogenetic Map5q36UniSTS
AI229184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,110,307 - 144,110,501 (+)MAPPERmRatBN7.2
Rnor_6.05150,082,025 - 150,082,218NCBIRnor6.0
Rnor_5.05153,760,747 - 153,760,940UniSTSRnor5.0
RGSC_v3.45150,780,768 - 150,780,961UniSTSRGSC3.4
Celera5142,553,584 - 142,553,777UniSTS
RH 3.4 Map5988.6UniSTS
Cytogenetic Map5q36UniSTS
BM387491  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,133,104 - 144,133,304 (+)MAPPERmRatBN7.2
Rnor_6.05150,104,821 - 150,105,020NCBIRnor6.0
Rnor_5.05153,783,543 - 153,783,742UniSTSRnor5.0
RGSC_v3.45150,803,564 - 150,803,763UniSTSRGSC3.4
Celera5142,576,340 - 142,576,539UniSTS
RH 3.4 Map5989.9UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 72 35 34 11 8
Low 2 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001063302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC103731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000013761   ⟹   ENSRNOP00000013761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000051097   ⟹   ENSRNOP00000046109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000067189   ⟹   ENSRNOP00000059520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000067349   ⟹   ENSRNOP00000061387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079935   ⟹   ENSRNOP00000075428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,191,053 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,163,395 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088493   ⟹   ENSRNOP00000071712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,141,556 - 144,237,821 (-)Ensembl
Rnor_6.0 Ensembl5150,084,611 - 150,167,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107222   ⟹   ENSRNOP00000077988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112187   ⟹   ENSRNOP00000085800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5144,111,906 - 144,237,821 (-)Ensembl
RefSeq Acc Id: NM_001399558   ⟹   NP_001386487
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,096 - 149,521,993 (-)NCBI
mRatBN7.25144,110,026 - 144,237,929 (-)NCBI
RefSeq Acc Id: XM_017593827   ⟹   XP_017449316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593830   ⟹   XP_017449319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593834   ⟹   XP_017449323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593835   ⟹   XP_017449324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593836   ⟹   XP_017449325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593838   ⟹   XP_017449327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593839   ⟹   XP_017449328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593842   ⟹   XP_017449331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593843   ⟹   XP_017449332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
Rnor_6.05150,081,727 - 150,167,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111259   ⟹   XP_038967187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
RefSeq Acc Id: XM_039111260   ⟹   XP_038967188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
mRatBN7.25144,110,010 - 144,194,729 (-)NCBI
RefSeq Acc Id: XM_039111263   ⟹   XP_038967191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,425,290 - 149,478,795 (-)NCBI
mRatBN7.25144,139,187 - 144,194,729 (-)NCBI
RefSeq Acc Id: XM_039111264   ⟹   XP_038967192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,425,290 - 149,478,795 (-)NCBI
mRatBN7.25144,139,187 - 144,194,729 (-)NCBI
RefSeq Acc Id: XM_039111265   ⟹   XP_038967193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,425,290 - 149,478,795 (-)NCBI
mRatBN7.25144,139,187 - 144,194,729 (-)NCBI
RefSeq Acc Id: XM_063287538   ⟹   XP_063143608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287539   ⟹   XP_063143609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287540   ⟹   XP_063143610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287541   ⟹   XP_063143611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287542   ⟹   XP_063143612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287543   ⟹   XP_063143613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287544   ⟹   XP_063143614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287545   ⟹   XP_063143615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287546   ⟹   XP_063143616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,093 (-)NCBI
RefSeq Acc Id: XM_063287547   ⟹   XP_063143617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287548   ⟹   XP_063143618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,092 (-)NCBI
RefSeq Acc Id: XM_063287549   ⟹   XP_063143619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,087 (-)NCBI
RefSeq Acc Id: XM_063287550   ⟹   XP_063143620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,085 (-)NCBI
RefSeq Acc Id: XM_063287551   ⟹   XP_063143621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,092 (-)NCBI
RefSeq Acc Id: XM_063287552   ⟹   XP_063143622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,084 (-)NCBI
RefSeq Acc Id: XM_063287553   ⟹   XP_063143623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,425,290 - 149,478,795 (-)NCBI
RefSeq Acc Id: XM_063287554   ⟹   XP_063143624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,087 (-)NCBI
RefSeq Acc Id: XM_063287555   ⟹   XP_063143625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,093 (-)NCBI
RefSeq Acc Id: XM_063287556   ⟹   XP_063143626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,098 (-)NCBI
RefSeq Acc Id: XM_063287557   ⟹   XP_063143627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,071 (-)NCBI
RefSeq Acc Id: XM_063287558   ⟹   XP_063143628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,079 (-)NCBI
RefSeq Acc Id: XM_063287559   ⟹   XP_063143629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,069 (-)NCBI
RefSeq Acc Id: XM_063287560   ⟹   XP_063143630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,072 (-)NCBI
RefSeq Acc Id: XM_063287561   ⟹   XP_063143631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,070 (-)NCBI
RefSeq Acc Id: XM_063287562   ⟹   XP_063143632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,079 (-)NCBI
RefSeq Acc Id: XM_063287563   ⟹   XP_063143633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,178 (-)NCBI
RefSeq Acc Id: XM_063287564   ⟹   XP_063143634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,069 (-)NCBI
RefSeq Acc Id: XM_063287565   ⟹   XP_063143635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,074 (-)NCBI
RefSeq Acc Id: XM_063287566   ⟹   XP_063143636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,072 (-)NCBI
RefSeq Acc Id: XM_063287567   ⟹   XP_063143637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,081 (-)NCBI
RefSeq Acc Id: XM_063287568   ⟹   XP_063143638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,078 (-)NCBI
RefSeq Acc Id: XM_063287569   ⟹   XP_063143639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,064 (-)NCBI
RefSeq Acc Id: XM_063287570   ⟹   XP_063143640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,071 (-)NCBI
RefSeq Acc Id: XM_063287571   ⟹   XP_063143641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,070 (-)NCBI
RefSeq Acc Id: XM_063287572   ⟹   XP_063143642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,071 (-)NCBI
RefSeq Acc Id: XM_063287573   ⟹   XP_063143643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,394,080 - 149,548,072 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386487 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449316 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449319 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449323 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449324 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449325 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449327 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449328 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449331 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967193 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143624 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143627 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143628 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143629 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143631 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143633 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143634 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143636 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143637 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143638 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143639 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143640 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143641 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143642 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143643 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80616 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013761
  ENSRNOP00000013761.4
  ENSRNOP00000046109
  ENSRNOP00000046109.3
  ENSRNOP00000059520.3
  ENSRNOP00000061387.2
  ENSRNOP00000071712.2
  ENSRNOP00000075428.2
  ENSRNOP00000077988.1
  ENSRNOP00000085800
  ENSRNOP00000085800.1
RefSeq Acc Id: XP_017449331   ⟸   XM_017593842
- Peptide Label: isoform X16
- UniProtKB: D3ZKF7 (UniProtKB/TrEMBL),   D4A9A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449332   ⟸   XM_017593843
- Peptide Label: isoform X18
- UniProtKB: A0A8I6A4E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449327   ⟸   XM_017593838
- Peptide Label: isoform X11
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449328   ⟸   XM_017593839
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A4E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449325   ⟸   XM_017593836
- Peptide Label: isoform X9
- UniProtKB: D3ZIP3 (UniProtKB/TrEMBL),   D4A9A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449319   ⟸   XM_017593830
- Peptide Label: isoform X2
- UniProtKB: A6ISR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449324   ⟸   XM_017593835
- Peptide Label: isoform X8
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449316   ⟸   XM_017593827
- Peptide Label: isoform X1
- UniProtKB: A6ISR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449323   ⟸   XM_017593834
- Peptide Label: isoform X7
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061387   ⟸   ENSRNOT00000067349
RefSeq Acc Id: ENSRNOP00000059520   ⟸   ENSRNOT00000067189
RefSeq Acc Id: ENSRNOP00000046109   ⟸   ENSRNOT00000051097
RefSeq Acc Id: ENSRNOP00000075428   ⟸   ENSRNOT00000079935
RefSeq Acc Id: ENSRNOP00000013761   ⟸   ENSRNOT00000013761
RefSeq Acc Id: ENSRNOP00000071712   ⟸   ENSRNOT00000088493
RefSeq Acc Id: XP_038967188   ⟸   XM_039111260
- Peptide Label: isoform X17
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967187   ⟸   XM_039111259
- Peptide Label: isoform X15
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967192   ⟸   XM_039111264
- Peptide Label: isoform X21
- UniProtKB: A0A0G2K161 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967193   ⟸   XM_039111265
- Peptide Label: isoform X23
- UniProtKB: A0A0G2K161 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967191   ⟸   XM_039111263
- Peptide Label: isoform X20
- UniProtKB: A0A0G2K161 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085800   ⟸   ENSRNOT00000112187
RefSeq Acc Id: ENSRNOP00000077988   ⟸   ENSRNOT00000107222
RefSeq Acc Id: NP_001386487   ⟸   NM_001399558
- UniProtKB: D4A9A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143633   ⟸   XM_063287563
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063143626   ⟸   XM_063287556
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063143625   ⟸   XM_063287555
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063143616   ⟸   XM_063287546
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063143621   ⟸   XM_063287551
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063143618   ⟸   XM_063287548
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063143624   ⟸   XM_063287554
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063143619   ⟸   XM_063287549
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063143620   ⟸   XM_063287550
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063143622   ⟸   XM_063287552
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063143637   ⟸   XM_063287567
- Peptide Label: isoform X44
RefSeq Acc Id: XP_063143632   ⟸   XM_063287562
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063143628   ⟸   XM_063287558
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063143638   ⟸   XM_063287568
- Peptide Label: isoform X45
RefSeq Acc Id: XP_063143635   ⟸   XM_063287565
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063143643   ⟸   XM_063287573
- Peptide Label: isoform X50
RefSeq Acc Id: XP_063143636   ⟸   XM_063287566
- Peptide Label: isoform X43
RefSeq Acc Id: XP_063143630   ⟸   XM_063287560
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063143640   ⟸   XM_063287570
- Peptide Label: isoform X47
RefSeq Acc Id: XP_063143642   ⟸   XM_063287572
- Peptide Label: isoform X49
RefSeq Acc Id: XP_063143627   ⟸   XM_063287557
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063143641   ⟸   XM_063287571
- Peptide Label: isoform X48
RefSeq Acc Id: XP_063143631   ⟸   XM_063287561
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063143634   ⟸   XM_063287564
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063143629   ⟸   XM_063287559
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063143639   ⟸   XM_063287569
- Peptide Label: isoform X46
RefSeq Acc Id: XP_063143615   ⟸   XM_063287545
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063143612   ⟸   XM_063287542
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063143617   ⟸   XM_063287547
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063143614   ⟸   XM_063287544
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063143613   ⟸   XM_063287543
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063143610   ⟸   XM_063287540
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143609   ⟸   XM_063287539
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143608   ⟸   XM_063287538
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063143611   ⟸   XM_063287541
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063143623   ⟸   XM_063287553
- Peptide Label: isoform X30
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K161-F1-model_v2 AlphaFold A0A0G2K161 1-866 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564762 AgrOrtholog
BioCyc Gene G2FUF-39717 BioCyc
Ensembl Genes ENSRNOG00000010037 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013761 ENTREZGENE
  ENSRNOT00000013761.7 UniProtKB/TrEMBL
  ENSRNOT00000051097 ENTREZGENE
  ENSRNOT00000051097.6 UniProtKB/TrEMBL
  ENSRNOT00000067189.4 UniProtKB/TrEMBL
  ENSRNOT00000067349.5 UniProtKB/TrEMBL
  ENSRNOT00000079935.2 UniProtKB/TrEMBL
  ENSRNOT00000088493.2 UniProtKB/TrEMBL
  ENSRNOT00000107222.1 UniProtKB/TrEMBL
  ENSRNOT00000112187 ENTREZGENE
  ENSRNOT00000112187.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_4.1_C UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  Band_41_protein_chordates UniProtKB/TrEMBL
  Ez/rad/moesin UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
NCBI Gene 313052 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  PTHR23280:SF12 UniProtKB/TrEMBL
Pfam 4_1_CTD UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
PhenoGen Epb41 PhenoGen
PIRSF Membrane_skeletal_4_1 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010037 RatGTEx
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2K161 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAK2_RAT UniProtKB/TrEMBL
  A0A8I5Y1T6_RAT UniProtKB/TrEMBL
  A0A8I6A4E3 ENTREZGENE, UniProtKB/TrEMBL
  A6ISR5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIP3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKF7 ENTREZGENE, UniProtKB/TrEMBL
  D4A6Q4_RAT UniProtKB/TrEMBL
  D4A9A6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-06 Epb41  erythrocyte membrane protein band 4.1  Epb4.1  erythrocyte membrane protein band 4.1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Epb4.1  erythrocyte membrane protein band 4.1  RGD1564762_predicted  similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564762_predicted  similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1 (predicted)  LOC313052  similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313052  similar to erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL