D5Got18 Marker Search Result - Rat Genome Database

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Marker: D5Got18

Symbol: D5Got18
Previously known as: oxsts2145; OT52.42; 
RGD ID: 43914
Expected Size: 166 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2579,031,392 - 79,031,558 (+)MAPPERmRatBN7.2
Rnor_6.0581,457,871 - 81,458,036NCBIRnor6.0
Rnor_5.0585,556,660 - 85,556,825UniSTSRnor5.0
RGSC_v3.4582,406,661 - 82,406,827RGDRGSC3.4
RGSC_v3.4582,406,662 - 82,406,827UniSTSRGSC3.4
RGSC_v3.1582,411,775 - 82,411,940RGD
Celera577,945,907 - 77,946,072UniSTS
RH 3.4 Map5634.5UniSTS
RH 3.4 Map5634.5RGD
RH 2.0 Map5490.2RGD
Cytogenetic Map5q24UniSTS
Is Marker For: Strains:   WF.WKY-(D5Uwm76-D5Got18)/Uwm   WF.WKY-(D5Uwm78-D5Uwm98)/Uwm   WF.WKY-(D5Uwm95-D5Uwm98)/Uwm  
Genes:   Astn2  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. UniSTS Pipeline RGD automated pipelines
4. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
5. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer ACGCATCACACATGGAAGTT
Reverse Primer ACAGTGGGACATATGTTTCACACAT
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2320342Astn2astrotactin 257875814279744021Rat
GenBank Nucleotide AU025492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat

1 to 10 of 37 rows


Database
Acc Id
Source(s)
NCBI Gene 100361323 UniSTS