D5Rat137 Marker Search Result - Rat Genome Database

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Marker: D5Rat137

Symbol: D5Rat137
Previously known as: oxsts7156; R0094-C09; 
RGD ID: 40790
Expected Size: 205 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8567,835,342 - 67,835,547 (+)Marker Load Pipeline
mRatBN7.2563,039,818 - 63,040,023 (-)MAPPERmRatBN7.2
Rnor_6.0568,545,140 - 68,545,344NCBIRnor6.0
Rnor_5.0572,985,426 - 72,985,630UniSTSRnor5.0
RGSC_v3.4565,399,934 - 65,400,139RGDRGSC3.4
RGSC_v3.4565,399,935 - 65,400,139UniSTSRGSC3.4
RGSC_v3.1565,405,012 - 65,405,264RGD
Celera564,553,819 - 64,554,023UniSTS
RH 2.0 Map3570.5RGD
SHRSP x BN Map537.0299RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GCACAAACTCTTGTCAGAGCC
Reverse Primer TGAGCCTATGAGAGTATGCTCATT
 
Template 
AGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTTGCTAATTCAGCACAAACTCTTGTC
AGAGCCAGTGGCATCCACACTTGTCCTTTCAAATTGCTTTTGCATATATTTTACCAAGCAGAAG
ACAGGGAGGAAAAGATAGGTGACCAAGAAGCCTCAAGATTGGTACAGAGATTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTAAATGAGCATACTCTCATAGGCT
CATAGGTTTTAACATTTAATCTCCATTTAATCTCCAGGGGTACCGAGCTCGAATTCGTAATCAT
GGTCATAGCTGTTTCCTGTGTNAAATTGNNNNNNGNNCACAATTCCACACAACATNACGAGCCG
GAANATAAAG
Strain, Expected Size(s)

ACI/N 211 AVN/Orl 209 BBDP/Rhw 211
BBDR/Rhw 211 BC/CpbU 209 BDIX/Han 211
BDVII/Cub 211 BN-Lx/Cub 207 BN/SsNHsd 207
BP/Cub 211 BUF/Pit 209 COP/OlaHsd 211
DA/PitN 211 DON/Melb 211 F344/Pit 211
FHH/Eur 209 GH/Omr 209 GK/KyoSwe 213
IS/Kyo 203 LE/Mol 211 LEW/Pit 211
LH/Mav 211 LN/Mav 211 LOU/CHan 209
M520/N 211 MHS/Gib 211 MNR/N 209
MNRA/N 211 MNS/Gib 211 MR/Pit 207
NEDH/K 211 NP9 211 ODU/N 211
OKA/Wsl 211 OM/Ztm 209 P5C 209
PVG/Pit 211 SD/Rij 209 SHR/OlaHsd 211
SHRSP/Riv 211 SR/Jr 211 SS/Jr 203
WAG/RijKyo 211 WF/Pit 211 WIST/Nhg 211
WKY/OlaHsd 211 WN/N 211 WTC/Kyo 211


GenBank Nucleotide DH583518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH615058.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat

1 to 10 of 40 rows