Brinp1 (BMP/retinoic acid inducible neural specific 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Brinp1 (BMP/retinoic acid inducible neural specific 1) Rattus norvegicus

Analyze

Symbol:

Brinp1

Name:

BMP/retinoic acid inducible neural specific 1

RGD ID:

708519

Description:

Predicted to be involved in cellular response to retinoic acid; central nervous system neuron development; and negative regulation of mitotic cell cycle. Predicted to act upstream of or within several processes, including behavioral fear response; maternal behavior; and short-term memory. Predicted to be active in cytoplasm; dendrite; and neuronal cell body. Orthologous to human BRINP1 (BMP/retinoic acid inducible neural specific 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

BMP/retinoic acid-inducible neural-specific protein; BMP/retinoic acid-inducible neural-specific protein 1; bone morphogenetic protein/retinoic acid inducible neural-specific 1; bone morphogenic protein/retinoic acid inducible neural-specific 1; Dbc1; Dbccr1; deleted in bladder cancer 1; deleted in bladder cancer 1 (human); deleted in bladder cancer chromosome region candidate 1; deleted in bladder cancer chromosome region candidate 1 (human); deleted in bladder cancer protein 1 homolog; LOC140610

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	82,348,501 - 82,550,506 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	82,348,930 - 82,493,150 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	84,718,620 - 84,863,691 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	86,535,928 - 86,680,999 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	86,511,601 - 86,656,678 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	84,919,416 - 85,123,828 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	84,919,367 - 85,123,829 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	89,012,699 - 89,215,808 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	86,070,267 - 86,216,181 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	86,075,380 - 86,221,291 (-)	NCBI
Celera	5	81,182,670 - 81,325,632 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

attention deficit hyperactivity disorder (ISS)

autism spectrum disorder (ISS)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dichloroacetic acid (ISO)

dieldrin (EXP)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

entinostat (ISO)

flavonoids (EXP)

genistein (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

O-methyleugenol (ISO)

panobinostat (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sunitinib (ISO)

thapsigargin (ISO)

trichostatin A (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral fear response (IEA,ISO)

brain development (IEA)

cellular response to retinoic acid (IBA,IEA,ISO)

central nervous system neuron development (IEA,ISO)

exploration behavior (IEA,ISO)

maternal behavior (IEA,ISO)

negative regulation of cell cycle (ISO,ISS)

negative regulation of mitotic cell cycle (IBA,IEA,ISO)

negative regulation of neurogenesis (IEA,ISO)

neurogenesis (ISO)

positive regulation of neuron differentiation (IEA)

short-term memory (IEA,ISO)

social behavior (IEA,ISO)

vocalization behavior (IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

dendrite (IBA)

neuronal cell body (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Homozygous deletion at the 9q32-33 candidate tumor suppressor locus in primary human bladder cancer.	Nishiyama H, etal., Genes Chromosomes Cancer 1999 Oct;26(2):171-5.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	DBCCR1 mediates death in cultured bladder tumor cells.	Wright KO, etal., Oncogene 2004 Jan 8;23(1):82-90.

Additional References at PubMed

PMID:11420708	PMID:15193423	PMID:20025061	PMID:22161971	PMID:24528488	PMID:27042284

Genomics

Comparative Map Data

Brinp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	82,348,501 - 82,550,506 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	82,348,930 - 82,493,150 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	84,718,620 - 84,863,691 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	86,535,928 - 86,680,999 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	86,511,601 - 86,656,678 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	84,919,416 - 85,123,828 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	84,919,367 - 85,123,829 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	89,012,699 - 89,215,808 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	86,070,267 - 86,216,181 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	86,075,380 - 86,221,291 (-)	NCBI
Celera	5	81,182,670 - 81,325,632 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

BRINP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	119,166,629 - 119,369,435 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	119,153,458 - 119,369,435 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	121,928,907 - 122,131,713 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	120,968,729 - 121,171,560 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	119,008,461 - 119,211,255	NCBI
Celera	9	92,576,710 - 92,779,541 (-)	NCBI		Celera
Cytogenetic Map	9	q33.1	NCBI
HuRef	9	91,546,083 - 91,748,928 (-)	NCBI		HuRef
CHM1_1	9	122,076,523 - 122,279,332 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	131,360,823 - 131,563,641 (-)	NCBI		T2T-CHM13v2.0

Brinp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	68,679,609 - 68,872,634 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	68,679,751 - 68,872,634 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	68,761,372 - 68,954,397 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	68,761,514 - 68,954,397 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	68,422,406 - 68,615,431 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	68,247,733 - 68,440,758 (-)	NCBI		MGSCv36	mm8
Celera	4	67,365,404 - 67,558,519 (-)	NCBI		Celera
Cytogenetic Map	4	C1	NCBI
cM Map	4	35.03	NCBI

Brinp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	8,529,177 - 8,704,113 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	8,529,213 - 8,704,113 (+)	NCBI	ChiLan1.0	ChiLan1.0

BRINP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	19,976,603 - 20,179,910 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	90,296,199 - 90,499,503 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	118,646,433 - 118,848,825 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	118,646,433 - 118,792,727 (-)	Ensembl	panpan1.1		panPan2

BRINP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	72,625,011 - 72,794,641 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	72,628,582 - 72,764,077 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	71,035,799 - 71,205,927 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	73,753,070 - 73,925,482 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	73,755,556 - 73,925,647 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	72,279,137 - 72,449,364 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	72,301,385 - 72,471,690 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	73,036,446 - 73,206,336 (-)	NCBI		UU_Cfam_GSD_1.0

Brinp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	188,077,412 - 188,250,615 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	7,845,351 - 8,019,190 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936487	7,845,799 - 8,019,167 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRINP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	259,350,367 - 259,544,576 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	259,350,359 - 259,544,604 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	291,412,563 - 291,465,430 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRINP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	20,189,270 - 20,387,494 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	20,189,295 - 20,388,089 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	22,594,629 - 22,792,813 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brinp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	15,902,858 - 16,075,104 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	15,902,890 - 16,071,513 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Brinp1
1199 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	25
Count of miRNA genes:	24
Interacting mature miRNAs:	25
Transcripts:	ENSRNOT00000007578
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat

Markers in Region

D5Rat147

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	82,394,392 - 82,394,565 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	84,963,058 - 84,963,230	NCBI	Rnor6.0
Rnor_5.0	5	89,056,339 - 89,056,511	UniSTS	Rnor5.0
RGSC_v3.4	5	86,116,638 - 86,116,811	RGD	RGSC3.4
RGSC_v3.4	5	86,116,639 - 86,116,811	UniSTS	RGSC3.4
RGSC_v3.1	5	86,121,751 - 86,121,924	RGD
Celera	5	81,226,931 - 81,227,156	UniSTS
SHRSP x BN Map	5	48.0099	RGD
SHRSP x BN Map	5	48.0099	UniSTS
Cytogenetic Map	5	q31	UniSTS

D5Got22

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	82,478,606 - 82,478,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	85,051,757 - 85,051,985	NCBI	Rnor6.0
Rnor_5.0	5	89,143,751 - 89,143,979	UniSTS	Rnor5.0
RGSC_v3.4	5	86,201,635 - 86,201,864	RGD	RGSC3.4
RGSC_v3.4	5	86,201,636 - 86,201,864	UniSTS	RGSC3.4
RGSC_v3.1	5	86,206,749 - 86,206,977	RGD
Celera	5	81,311,095 - 81,311,323	UniSTS
RH 3.4 Map	5	644.8	UniSTS
RH 3.4 Map	5	644.8	RGD
RH 2.0 Map	5	498.7	RGD
Cytogenetic Map	5	q31	UniSTS

BE120599

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	82,381,617 - 82,381,796 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	84,950,283 - 84,950,461	NCBI	Rnor6.0
Rnor_5.0	5	89,043,564 - 89,043,742	UniSTS	Rnor5.0
RGSC_v3.4	5	86,103,864 - 86,104,042	UniSTS	RGSC3.4
Celera	5	81,214,154 - 81,214,332	UniSTS
RH 3.4 Map	5	644.6	UniSTS
Cytogenetic Map	5	q31	UniSTS

BE118680

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	82,484,560 - 82,484,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	85,057,998 - 85,058,163	NCBI	Rnor6.0
Rnor_5.0	5	89,149,992 - 89,150,157	UniSTS	Rnor5.0
RGSC_v3.4	5	86,207,592 - 86,207,757	UniSTS	RGSC3.4
Celera	5	81,317,043 - 81,317,208	UniSTS
RH 3.4 Map	5	645.0	UniSTS
Cytogenetic Map	5	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									64
Low		16	11	10		10			10	16	34	11
Below cutoff	3	17	43	28	17	28	7	8		18	6		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB051356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000007578 ⟹ ENSRNOP00000007578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	82,348,930 - 82,493,150 (-)	Ensembl
Rnor_6.0 Ensembl	5	84,919,367 - 85,123,829 (-)	Ensembl

RefSeq Acc Id:

NM_080482 ⟹ NP_536730

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	82,348,926 - 82,493,150 (-)	NCBI
Rnor_6.0	5	84,919,843 - 85,066,677 (-)	NCBI
Rnor_5.0	5	89,012,699 - 89,215,808 (-)	NCBI
RGSC_v3.4	5	86,070,267 - 86,216,181 (-)	RGD
Celera	5	81,182,670 - 81,325,632 (-)	RGD

Sequence:

show sequence

CTCCAGGACTCCACAGAATGGAGCAAGAATGAGAGGAAAAAGGCCGGCAGAAAAGCATGAACTG
GAGGTTTGTTGAGCTCCTCTACTTCCTGTTTGTATGGGGCCGTATCTCAGTGCAGCCCTCCCAC
CAGGAGCCAGCTGGGACAGACCAACATGTCTCCAAGGAATTTGATTGGCTTATTTCAGACAGGG
GGCCTTTCCACCACTCCAGGAGCTACCTATCCTTTGTGGAAAGACACCGGCAAGGATTTACAAC
CAGATATAAAATATACAGGGAGTTTGCCCGTTGGAAGGTGAGGAACACAGCCATAGAAAGGAGA
GATCTGGTCCGTCATCCAGTGCCCCTCATGCCGGAGTTTCAAAGGAGCATTCGTCTGCTTGGCA
GGAGACCCACCACCCAGCAGTTCATTGATACCATCATCAAAAAGTACGGCACACACCTGCTCAT
CTCTGCTACATTGGGAGGAGAGGAGGCTTTGACCATGTACATGGACAAAAGTCGCCTCGACCGG
AAGTCAGGAAATGCTACCCAAAGTGTTGAAGCTTTGCACCAGCTTGCATCATCCTACTTTGTCG
ACCGTGATGGCACCATGAGAAGGCTCCATGAGATCCAGATTTCAACTGGAGCAATCAAGGTCAC
AGAGACACGCACTGGGCTTCTGGGCTGTAACAGCTATGACAATCTGGACTCTGTGAGTTCTGTC
CTTCTGCAAAGCACGGAGAGCAAACTGCACCTTCAAGGTCTACAGATAATCTTCCCGCAGTATC
TGCAAGAGAAGTTTGTACAGTCAGCCTTGAGTTACATCATGTGCAATGGCGAGGGAGAGTATGT
CTGTCAGAACAGCCAGTGTCGCTGCCAGTGTGCTGAGGAGTTCCCACAGTGCAACTGCCCTATC
ACCGACATCCAGATCATGGAATTTACACTGGCTAACATGGCCAAGGCCTGGACTGAAGCTTATA
AGGACCTGGAGAATTCAGATGAGTTCAAGTCATTTATGAAGCGTCTCCCAAGCAACCACTTCCT
GACCATTGGCAGCATCCACCAGCACTGGGGCAATGACTGGGACCTGCAGAGCCGTTACAAGCTC
CTACAGAGTGCCACTGAGGCTCAGAGGCAGAAAATCCAGAGGACCGCCCGCAAGCTCTTTGGCC
TCAGTGTGCGCTGCCGCCACAATCCCAACCACCAGCTGCCTAGAGAGAGGACAATTCAACAGTG
GCTTGCAAGGGTCCAGTCACTTCTCTATTGCAATGAGAATGGGTTCTGGGGAACCTTCCTGGAA
AGCCAGAGGAGTTGTGTGTGCCATGGTAGCACCACACTGTGCCAGCGCCCTATCCCATGTATCA
TAGGTGGGAACAACAGCTGTGCCATGTGCAGCCTGGCCAACATCTCACTCTGTGGCTCCTGCAA
TAAGGGCTACAAGCTGTATAGAGGCCGCTGTGAACCACAAAACGTGGACTCTGAGCGGAGTGAG
CAGTTCATCAGCTTTGAGACCGACCTGGACTTCCAGGACTTGGAACTGAAGTACCTGTTGCAGA
AGATGGATTCACGCCTCTATGTCCACACTACCTTCATCAGCAATGAGATTCGCCTGGATACGTT
CTTTGACCTTCGGTGGCGCAAGCGCATGTCCCTCACTCTCAAGAGCAACAAGAACCGCATGGAC
TTTATCCATATGGTGATCGGCATGTCCATGCGAATCTGCCAGATGCGAAACAGCAGCCTGGACC
CTATGTTCTTTGTCTATGTCAATCCCTTCAGTGGGAGCCATTCAGAAGGCTGGAACATGCCCTT
TGGGGAATTTGGCTACCCACGTTGGGAGAAGATCCGTCTGCAAAACAGCCAATGCTACAACTGG
ACTCTCTTGTTGGGCAATCGGTGGAAAACTTTTTTCGAGACTGTCCATATCTACCTACGTAGTC
GGACTCGGCTACCCACCCTACGCAATGAGACTGGCCAGGGCCCCGTGGACCTGTCAGATCCCTC
CAAAAGGCAATTCTACATCAAGATCTCCGATGTGCAGGTGTTCGGGTATAGCCTGAGGTTCAAT
GCTGACCTCTTACGAAGTGCCGTGCAACAGGTTAATCAATCCTATACACAGGGTGGCCAGTTCT
ATTCCTCCTCATCCGTGATGCTTCTCATGTTGGACATTCGGGACCGAATTAACCGCCTGGCCCC
TCCTGTGGCCCCAGGAAAACCCCAGCTGGACTTGTTTTCCTGTATGCTGAAGCACCGCCTGAAG
CTGACCAACAGTGAGATTATCAGGGTGAATCATGCCTTGGACCTCTACAACACTGAGATCCTCA
AACAGTCTGACCAGATGACAGCCAAACTCTGCTAACCCGGGACCCTTTGCCATGGACTTTCCCT
TCTGTTGTACAAATACAACAGAATAAAACAAAGTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238272 ⟹ XP_006238334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	82,348,501 - 82,550,506 (-)	NCBI
Rnor_6.0	5	84,919,416 - 85,123,828 (-)	NCBI
Rnor_5.0	5	89,012,699 - 89,215,808 (-)	NCBI

Sequence:

show sequence

TTGGACTTCCCTCTCCATTCGCCAGCCGCCTCGCTCCGGGTCCCCACGGCTGCGAACTGATCTG
GCACGGGGGGGTGGGCAAGAGGAGGAGAAGAGCGCAGGCAAAGGAGAAGGCTAGAGAGACAGAG
AGCCGGAGGCAGAGGGAGTAGTGGCCACCTTCCGGAGCCGGGATTCATGCCTGTCCTCGGGACC
AGCCAAGGGGACTTTAAGGCTGAGTATGAGCCAGGCTGCTAGGAGCCAGGTACCCCCACGCCTG
CAGTCCCCGCGCCGTCCCCGGTATGCGAGCTGGACGCAGGGCTCTTCCAAGTTCCCACCGAGCC
GAATAAAAAGCGTCCTCCTGCTGTTCTCCGCCAAAGACGGACATTGACTCCAGGACTCCACAGA
ATGGAGCAAGAATGAGAGGAAAAAGGCCGGCAGAAAAGCATGAACTGGAGGTTTGTTGAGCTCC
TCTACTTCCTGTTTGTATGGGGCCGTATCTCAGTGCAGCCCTCCCACCAGGAGCCAGCTGGGAC
AGACCAACATGTCTCCAAGGAATTTGATTGGCTTATTTCAGACAGGGGGCCTTTCCACCACTCC
AGGAGCTACCTATCCTTTGTGGAAAGACACCGGCAAGGATTTACAACCAGATATAAAATATACA
GGGAGTTTGCCCGTTGGAAGGTGAGGAACACAGCCATAGAAAGGAGAGATCTGGTCCGTCATCC
AGTGCCCCTCATGCCGGAGTTTCAAAGGAGCATTCGTCTGCTTGGCAGGAGACCCACCACCCAG
CAGTTCATTGATACCATCATCAAAAAGTACGGCACACACCTGCTCATCTCTGCTACATTGGGAG
GAGAGGAGGCTTTGACCATGTACATGGACAAAAGTCGCCTCGACCGGAAGTCAGGAAATGCTAC
CCAAAGTGTTGAAGCTTTGCACCAGCTTGCATCATCCTACTTTGTCGACCGTGATGGCACCATG
AGAAGGCTCCATGAGATCCAGATTTCAACTGGAGCAATCAAGGTCACAGAGACACGCACTGGGC
CTCTGGGCTGTAACAGCTATGACAATCTGGACTCTGTGAGTTCTGTCCTTCTGCAAAGCACGGA
GAGCAAACTGCACCTTCAAGGTCTACAGATAATCTTCCCGCAGTATCTGCAAGAGAAGTTTGTA
CAGTCAGCCTTGAGTTACATCATGTGCAATGGCGAGGGAGAGTATGTCTGTCAGAACAGCCAGT
GTCGCTGCCAGTGTGCTGAGGAGTTCCCACAGTGCAACTGCCCTATCACCGACATCCAGATCAT
GGAATTTACACTGGCTAACATGGCCAAGGCCTGGACTGAAGCTTATAAGGACCTGGAGAATTCA
GATGAGTTCAAGTCATTTATGAAGCGTCTCCCAAGCAACCACTTCCTGACCATTGGCAGCATCC
ACCAGCACTGGGGCAATGACTGGGACCTGCAGAGCCGTTACAAGCTTCTGCAGAGTGCCACTGA
GGCTCAAAGGCAGAAAATCCAGCGTACTGCCCGCAAGCTCTTTGGCCTCAGTGTGCGCTGTCGT
CACAATCCCAACCACCAGCTGCCTAGAGAGAGGACAATTCAGCAGTGGCTTGCAAGGGTCCAGT
CACTTCTCTACTGCAATGAGAATGGGTTCTGGGGAACCTTCCTGGAAAGCCAGAGGAGTTGTGT
GTGCCATGGTAGCACCACACTGTGTCAGCGCCCTATCCCATGCATCATAGGTGGGAACAACAGC
TGTGCCATGTGCAGCCTGGCCAACATCTCACTCTGTGGCTCCTGCAATAAGGGCTACAAGCTGT
ATAGAGGCCGCTGTGAACCACAAAACGTGGACTCTGAGCGGAGTGAGCAGTTCATCAGCTTTGA
GACCGACCTGGACTTCCAGGACTTGGAACTGAAGTACCTGTTGCAGAAGATGGATTCACGCCTC
TATGTCCACACTACCTTCATCAGCAATGAGATTCGCCTGGATACGTTCTTTGACCCTCGGTGGC
GCAAGCGCATGTCCCTCACTCTCAAGAGCAACAAGAACCGCATGGACTTTATCCATATGGTGAT
CGGCATGTCCATGCGAATCTGCCAGATGCGAAACAGCAGCCTGGACCCTATGTTCTTTGTCTAT
GTCAATCCCTTCAGTGGGAGCCATTCAGAAGGCTGGAACATGCCCTTTGGGGAATTTGGCTACC
CACGTTGGGAGAAGATCCGTCTGCAAAACAGCCAATGCTACAACTGGACTCTCTTGTTGGGCAA
TCGGTGGAAAACTTTTTTCGAGACTGTCCATATCTACCTACGTAGTCGGACTCGGCTACCCACC
CTACGCAATGAGACTGGCCAGGGCCCCGTGGACCTGTCAGATCCCTCCAAAAGGCAATTCTACA
TCAAGATCTCCGATGTGCAGGTGTTCGGGTATAGCCTGAGGTTCAATGCTGACCTCTTACGAAG
TGCCGTGCAACAGGTTAATCAATCCTATACACAGGGTGGCCAGTTCTATTCCTCCTCATCCGTG
ATGCTTCTCATGTTGGACATTCGGGACCGAATTAACCGCCTGGCCCCTCCTGTGGCCCCAGGAA
AACCCCAGCTGGACTTGTTTTCCTGTATGCTGAAGCACCGCCTGAAGCTGACCAACAGTGAGAT
TATCAGGGTGAATCATGCCTTGGACCTCTACAACACTGAGATCCTCAAACAGTCTGACCAGATG
ACAGCCAAACTCTGCTAACCCGGGACCCTTTGCCATGGACTTTCCCTTCTGTTGTAGGAATACA
ACAGAATAAAACAAAGTAAAACAAAAGAAAAGACACACACACACACACACACACACACACACAC
ACACACACACACAAACAGATTTGTAAAATGTAATTAGTATTCAAAGGAAAGGAGGAAAATACTT
CATTTGTTGAAAGCTAAAGTGTTCTAGCAGCTGTATAAAACAGTGGGGCATGTCTCTTACTTCT
ATATTATGTCATGAAGAAGGATCTCAGAATTTTGTGAAGCTTTGAGTTGGTGGCTTCTTTGGCA
TCAGGTGCTGTGTAGAGGGGGGGGAGAAGGGGAGATCATATGCAATGAATTGTAAAGACCTCTG
CTGTGCAGGTGCTAAGATTAAACACTAAAAGAGAGAGAAAGAGATATATGTAATGTACCTCTGA
CACTGCCATTTTTCCTTGTGAGAGGAAATGGACGTAGATAAAGAAGATATTTCTTCCGCTAAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_536730	(Get FASTA)	NCBI Sequence Viewer
	XP_006238334	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB55642	(Get FASTA)	NCBI Sequence Viewer
	EDM10504	(Get FASTA)	NCBI Sequence Viewer
	Q925T8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_536730 ⟸ NM_080482
- Peptide Label:	precursor
- UniProtKB:	Q925T8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNWRFVELLYFLFVWGRISVQPSHQEPAGTDQHVSKEFDWLISDRGPFHHSRSYLSFVERHRQG FTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDTIIKKYGTH LLISATLGGEEALTMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMRRLHEIQISTGAI KVTETRTGLLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQEKFVQSALSYIMCNGEG EYVCQNSQCRCQCAEEFPQCNCPITDIQIMEFTLANMAKAWTEAYKDLENSDEFKSFMKRLPSN HFLTIGSIHQHWGNDWDLQSRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHNPNHQLPRERTI QQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTTLCQRPIPCIIGGNNSCAMCSLANISLCG SCNKGYKLYRGRCEPQNVDSERSEQFISFETDLDFQDLELKYLLQKMDSRLYVHTTFISNEIRL DTFFDLRWRKRMSLTLKSNKNRMDFIHMVIGMSMRICQMRNSSLDPMFFVYVNPFSGSHSEGWN MPFGEFGYPRWEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLRSRTRLPTLRNETGQGPVDLS DPSKRQFYIKISDVQVFGYSLRFNADLLRSAVQQVNQSYTQGGQFYSSSSVMLLMLDIRDRINR LAPPVAPGKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEILKQSDQMTAKLC hide sequence

RefSeq Acc Id:	XP_006238334 ⟸ XM_006238272
- Peptide Label:	isoform X1
- UniProtKB:	G3V6Q9 (UniProtKB/TrEMBL), A6J803 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNWRFVELLYFLFVWGRISVQPSHQEPAGTDQHVSKEFDWLISDRGPFHHSRSYLSFVERHRQG FTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDTIIKKYGTH LLISATLGGEEALTMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMRRLHEIQISTGAI KVTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQEKFVQSALSYIMCNGEG EYVCQNSQCRCQCAEEFPQCNCPITDIQIMEFTLANMAKAWTEAYKDLENSDEFKSFMKRLPSN HFLTIGSIHQHWGNDWDLQSRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHNPNHQLPRERTI QQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTTLCQRPIPCIIGGNNSCAMCSLANISLCG SCNKGYKLYRGRCEPQNVDSERSEQFISFETDLDFQDLELKYLLQKMDSRLYVHTTFISNEIRL DTFFDPRWRKRMSLTLKSNKNRMDFIHMVIGMSMRICQMRNSSLDPMFFVYVNPFSGSHSEGWN MPFGEFGYPRWEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLRSRTRLPTLRNETGQGPVDLS DPSKRQFYIKISDVQVFGYSLRFNADLLRSAVQQVNQSYTQGGQFYSSSSVMLLMLDIRDRINR LAPPVAPGKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEILKQSDQMTAKLC hide sequence

RefSeq Acc Id:

ENSRNOP00000007578 ⟸ ENSRNOT00000007578

Protein Domains

MACPF

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q925T8-F1-model_v2	AlphaFold	Q925T8	1-760	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708519	AgrOrtholog
BioCyc Gene	G2FUF-41023	BioCyc
Ensembl Genes	ENSRNOG00000005561	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000007578	ENTREZGENE
	ENSRNOP00000007578.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007578	ENTREZGENE
	ENSRNOT00000007578.5	UniProtKB/TrEMBL
InterPro	BRINP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MACPF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:140610	UniProtKB/Swiss-Prot
NCBI Gene	140610	ENTREZGENE
PANTHER	BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15564	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BRINP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MACPF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Brinp1	PhenoGen
SMART	MACPF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6J803	ENTREZGENE, UniProtKB/TrEMBL
	BRNP1_RAT	UniProtKB/Swiss-Prot
	G3V6Q9	ENTREZGENE, UniProtKB/TrEMBL
	Q925T8	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-01	Brinp1	BMP/retinoic acid inducible neural specific 1	Brinp1	bone morphogenetic protein/retinoic acid inducible neural-specific 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-14	Brinp1	bone morphogenetic protein/retinoic acid inducible neural-specific 1	Brinp1	bone morphogenic protein/retinoic acid inducible neural-specific 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-07	Brinp1	bone morphogenic protein/retinoic acid inducible neural-specific 1	Dbc1	deleted in bladder cancer 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-10	Dbc1	deleted in bladder cancer 1	Dbc1	deleted in bladder cancer 1 (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-15	Dbc1	deleted in bladder cancer 1 (human)	Dbc1	deleted in bladder cancer 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-25	Dbc1	deleted in bladder cancer 1	Dbccr1	deleted in bladder cancer chromosome region candidate 1 (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Dbccr1	deleted in bladder cancer chromosome region candidate 1 (human)	LOC140610	BMP/retinoic acid-inducible neural-specific protein	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI